3.4- Genetic information, variation and relationships between organisms Flashcards
What is a gene?
A small section of DNA that codes for the amino acid sequence of a polypeptide and a functional RNA (including ribosomal RNA and tRNAs).
Where are genes found?
On the locus of a particular DNA molecule.
What is an allele?
A different version of the same gene.
Individuals have the same genes but there may be a slightly different base sequence/ version of the gene resulting in a different protein being formed.
Describe chromosomes.
Tightly coiled up DNA- located in nucleus in eukaryotic cells.
Humans have 23 pairs of chromosomes in the body cells.
Chromosomes are single threads of DNA when they are not undergoing cell division, after DNA replication in interphase: 2 copies of the chromosome are made- each ‘arm’ is called a chromatid. During mitosis, each chromatid is separated back into the chromosome.
What are homologous chromosomes?
A pair of chromosomes that are exactly the same size, have the same genes but may contain different alleles.
How is DNA stored in a eukaryotic cell?
As chromosomes inside the nucleus which are linear in shape. To tightly coil the DNA so it can fit inside the nucleus as chromosomes, the DNA is tightly wound around proteins called histones- these prevent the DNA from getting tangled.
The length/amount of DNA of each cell in the body is the same.
What is a nucleosome?
The complex of DNA wrapped around a histone.
What is a triplet?
A sequence of 3 DNA bases that codes for a specific amino acid.
How is DNA stored in a prokaryotic cell?
The DNA molecules are much shorter and are circular.
Due to the DNA molecules being shorter, they are not wound around histones. The DNA is not associated with a protein.
DNA is free within the cytoplasm.
No introns.
What is the DNA like in the mitochondria and chloroplasts of eukaryotic cells?
The DNA is necessary to code for the enzymes involved in aerobic respiration in mitochondria and photosynthesis in chloroplasts.
The DNA is similar to the DNA in prokaryotic cells: it is shorter than eukaryotic DNA, it is circular and it is not associated with protein.
What is the start codon?
The first 3 bases/triplet at the start of a gene, copied onto mRNA.
Initiates translation.
What is the stop codon?
The final 3 bases at the end of every gene that do not code for an amino acid.
There is no complementary anti-codon with a particular amino acid so the stop codons mark the end of a polypeptide chain and cause the ribosomes to detach, stopping translation.
What are the 3 features of the genetic code?
It is universal, degenerate and non-overlapping.
How do we know that 3 bases code for one amino acid?
20 amino acids that genetic code has to code for. 4 bases (CGTA), 3 are needed to make combinations to code for at least 20 amino acids.
Shown by 4^n
If 1 base coded for one amino acid there could only be 4 amino acids coded for. 4^1
If 2 bases coded for one amino acid there could only be 16 amino acids coded for. 4^2
If 3 bases coded for one amino acid there could be 64 amino acids coded for as 4^3=64. All 20 amino acids are covered.
How is the genetic code degenerate?
64 base combinations is more than necessary to code for 20 amino acids, meaning that most amino acids are coded for by more than one triplet of bases.
Eg tyrosine coded for by ATA and ATG
Why is the genetic code being degenerate a positive?
If there was a point mutation (one base was changed) then even though the triplet of bases would be different, it could still code for the same amino acid.
This is called a silent mutation.
How is the genetic code universal?
The same triplet of bases codes for the same amino acid in all organisms, this allows genetic engineering to be possible.
Eg- inserting the human gene for insulin into bacteria. The bacteria can make the same protein insulin.
How is the genetic code non-overlapping?
Each base in a gene is only part of 1 triplet of bases that codes for 1 amino acid. Each codon/ triplet of bases is read as one unit.
This is an advantage as if there is a point mutation and a different amino acid is coded for, this would only affect 1 triplet base so 1 amino acid, reducing the effect on the polypeptide chain.
What are introns?
Sections of DNA that do not code for amino acids and therefore polypeptide chains.
Known as ‘junk’ DNA.
Found only in eukaryotic DNA, they are spliced (removed) out of mRNA molecules.
What are exons?
The sections of DNA that code for amino acids. mRNA molecules and DNA in prokaryotes are only made of exons.
What is the genome?
The complete set of genes/DNA in a cell.
This should never change, may only change due to mutations.
What is the proteome?
The full range of proteins that a cell is able
to produce.
Constantly changing depending on which proteins are currently needed- some genes are not always in use.
What is messenger RNA?
A copy of 1 gene from DNA.
At the start of protein synthesis, the DNA can slightly unravel and a copy of this unravelled DNA is made in the mRNA. Created in nucleus and then leaves the nucleus to carry the copy of the bases of 1 gene to a ribosome.
Why can DNA not leave the nucleus?
DNA is too large to leave the nucleus and provide the genetic code. It is also at risk of being damaged by enzymes, destroying the genetic code.
Describe the structure of mRNA.
Single-stranded, every 3 bases code for a specific amino acid.
mRNA is much shorter than DNA as it is just a copy of the bases of one gene so it can leave the nucleus.
Short-lived as it is at the risk of enzymes hydrolysing the DNA/RNA polymers and breaking it down. Leaves the nucleus for an ideal amount of time.
Describe the function of mRNA.
Transfers the complementary DNA code out of the nucleus to the ribosome/ RER for protein synthesis to occur.
Describe the structure of tRNA.
Only found in the cytoplasm.
Single-stranded, but folds in on itself to create a cloverleaf shape held together by hydrogen bonds.
What is transfer RNA?
To attach to one of the 20 amino acids and transfer it to the ribosome to create the polypeptide chain.
3 exposed bases at the top called the amino acid attachment site and the amino acid can be brought from here to the anti-codon.
Anti-codon describes the 3 bases on a tRNA molecule that are complementary to the 3 bases on a mRNA molecule. Complementary base pairing can occur between codon and anti-codon: amino acid brought to mRNA molecule.
What is protein synthesis? + 2 stages?
The process where proteins are made, primarily on the ribosome. 2 stages:
1-transcription: where one gene on DNA is copied into mRNA
2-translation: where the mRNA joins with a ribosome and corresponding tRNA molecules bring the specific amino acid the codon codes for.
What happens during transcription?
A complementary mRNA copy of one gene on the DNA is made in the nucleus.
The mRNA is shorter than DNA, it is small enough to fit through nuclear pores in the nuclear envelope, so it can move into the cytoplasm and attach to the ribosomes.
What are the steps of transcription?
1) The DNA double helix unwinds to expose the bases to act as a template, only 1 strand of DNA acts as a template.
2) This is catalysed by the enzyme DNA helicase, which breaks the hydrogen bonds between bases.
3) Free mRNA nucleotides in the nucleus align opposite their exposed complementary DNA bases- A+U, C+G. T+A
4) The enzyme RNA polymerase joins the adjacent RNA nucleotides together by condensation reactions forming phosphodiester bonds.
5) pre-mRNA is formed and this can then be spliced to remove introns
What happens to the pre-mRNA in eukaryotic cells?
The pre-mRNA has to be modified to become mRNA so it can leave the nucleus and take part in translation.
The introns (sequences of bases in DNA that do not code for amino acids) are spliced out by a protein called a spliceosome- can break the phosphodiester bonds between the RNA nucleotides.
The finished mRNA is only made of exons.
What are the steps of translation?
1) Once the modified mRNA leaves the nucleus, it attaches to a ribosome at a start codon in the cytoplasm.
2) The tRNA molecule with the complementary anticodon to the start codon aligns opposite the mRNA, the ribosome holds them in place.
3) The ribosome moves along the mRNA molecule so the mRNA codon and a DIFFERENT complementary tRNA codon align.
Ribosomes bind no more than 2 tRNA molecules at the same time!
4) The 2 amino acids delivered by the 2 tRNA molecules are joined by a peptide bond, this bond requires ATP and is catalysed by an enzyme.
5) The next tRNA molecule with a complementary anticodon will join the codon, the previous tRNA will be attached and can be reused.
6) This occurs until the ribosome reaches the stop codon at the end of the mRNA molecule (the last 3 bases of mRNA that do not code for an amino acid)
7) The ribosome detaches and translation ends.
Describe how the production of mRNA in a eukaryotic cell is different from the production of mRNA in a prokaryotic cell.
mRNA is formed in the nucleus of eukaryotes, prokaryotes do not have a nucleus.
In prokaryotes, transcription results directly in the production of mRNA from DNA and the newly made mRNA does not need to be spliced as the genes in prokaryotes do not contain introns.
What is the DNA like in the mitochondria and chloroplasts of eukaryotic cells?
Like the DNA of prokaryotes: shorter, circular and not associated with protein.
Describe the role of ATP in translation
- Hydrolysis of ATP, to ADP + Pi, releases energy which is required for the process of translation.
- For the bond between the amino acid and its corresponding tRNA molecule
- Amino acid attaches at amino acid binding site
- For peptide bond formation between amino acids
Describe the differences and similarities between the structure of a tRNA molecule and the structure of an mRNA molecule
Similarities- both are single polynucleotide strands.
Differences-mRNA is straight whereas tRNA is folded into a cloverleaf shape, mRNA is longer than tRNA, tRNA has an amino acid attachment site and mRNA contains no paired bases or hydrogen bonds whereas tRNA contains some.
Describe the role of ribosomes in translation
The ribosome attaches to mRNA and holds tRNA, allowing codon-anticodon complementary base pairing.
Allows peptide bonds to form between amino acids.
Relate the base sequence of nucleic acids to the amino acid sequence of polypeptides.
tRNA anticodon is complementary to mRNA codon
Eg mRNA codon = ACG; tRNA anticodon = UGC
mRNA sequence of bases / codons are complementary to sequence of bases on DNA template strand
Eg mRNA base sequence = ACG UAG AAC; DNA base sequence = TGC ATC TTG
In RNA, uracil replaces thymine
If the mRNA base sequence has a U, what will the nucleotide be for DNA? Eg- AUG mRNA to DNA
AUG= TAC
What is a gene mutation?
A change in the sequence of base pairs in a DNA molecule that may result in an altered polypeptide.
Mutations occur spontaneously and continuously- errors in DNA often occur during DNA replication.
Name some causes of mutations?
Mutations that occur during the formation of gametes can be inherited.
Mutagenic agents such as: sunlight- increased exposure leads to thymine dimers in DNA, tobacco products, nitrites (processed meats), carcinogenic chemicals
What is a gene point mutation?
Any change to 1 or more nucleotide bases, a change in the sequence of bases in DNA.
What are the 3 ways nucleotides can alter the polypeptide chain?
Through insertion (addition), deletion and substitution.
What is the insertion/addition of nucleotides?
When a nucleotide with a new base is inserted into the DNA sequence.
This changes the amino acid that would have been coded for by the original base triplet as it creates a different triplet of bases.
This could change the triplets further on in the DNA sequence- which is known as a frameshift mutation as it changes the amino acid sequence of the protein, so the polypeptide may not be able to function.
What is the deletion of nucleotides?
When a nucleotide (and its base) is randomly deleted from the DNA sequence.
This changes the amino acid that would have been coded for, and it also affects the rest of the sequence by changing the remaining triplets. This is also known as a frameshift mutation.
This can change the amino acid sequence produced from the gene so the polypeptide may not be able to function.
What is the substitution of nucleotides + 3 types?
When a nucleotide in the DNA sequence is randomly swapped for a different nucleotide that has a different base.
This will only change the amino acid for the triplet in which the mutation occurs, and will not have a negative effect on rest of sequence.
3 types- silent, missense and nonsense mutations.
What are silent mutations?
When the mutation does not alter the amino acid sequence of the polypeptide as the genetic code is degenerate so more than one codon may code for the same amino acid.