33. Antibiotics Flashcards
Essay plan structure
- INTRODUCTION
-
BACTERIAL SURFACE STRUCTURES
- Gram stain technique
- Peptidoglycan
-
Gram negative cell structures
- Outer membrane
- Lipopolysaccharide (LPS)
- Porins
- Type 3 Secretion Systems
-
Gram positive cell wall structures
- Teichoic acid
-
Features of both
- Flagella
- Pilli
-
CLASSIFICATION OF ANTIBIOTICS
- Bactericidal
- Inhibition of cross linking
- Inhibits protein synthesis (EGMAT
- 50 s
- 30s
- Myobacterium (iconiazid)
- Bactericidal
- CONSIDERATION OF ADMINISTRATION
-
GENETIC BASIS OF BACTERIAL RESISTANCE
- Chromosomal mediated resistance
- Transposon mediated resistance
- Plasmid mediated resistance
-
BIOCHEMICAL BASIS OF RESISTANCE
- Drug inactivation
- Modification of dug target
- Reduced intracellular concentration
- Increased efflux
- Biofilm formation
-
SELECTION PRESSURES
- Hospitals
- FUTURE DIRECTION
Cell summary
-
(DD–)Transpeptidase (structural)
- Penicillin (beta–lactam)
- Cephalosporins
-
Blocks bacterial RNA polymerase (transcription)
- Rifampicin (rifamycins)
- Inhibit synthesis of 50s ribosome subunit (translation)
- Erythromysin (macrolide) prevents A–>P
-
Inhibits 30s ribosome subunit (translation)
- Gentamycin (aminoglycoside) - acceptance of incorrect AA-tRNA complexes
- Tetracyclin - blocks A site
-
Inhibits folic acid synthesis by inhibiting dihydropterate synthetase (replication)
- Sulfonamids
- Inhibits folate synthesis by inhibiting dihydrofolate reductase (replication)
- Trimethoprim (diaminopyridines)
-
Inhibits topoisomerase IV and DNA gyrase
- Ciprofoxacin (fluoroquinolines)
- For gram positive bacteria, topoisomerase IV is the target
- For gram negative bacteria, DNA gyrase is the target
- RNA polymerase = converting DNA into RNA (transcription)
Qualities of a successful antibiotic
- Selectively toxic to the bacteria
- Target and inhibit an essential bacterial function
- Have a wide therapeutic index
Perceptive opening about antibiotics
- Before the start of the 20th century, infectious diseases were the leading cause of death worldwide
- The purification of the first antibiotic by Chain & Florey 1942 was of great significance, allowing the treatment of and recovery from infected cuts and wounds that were previously fatal
- It also dramatically reduced the risk of surgery and invasive procedures that increase the risk of infection and fatality
- The initial success prompted the Golden Era for the Discovery of Antibiotics (1950-1970) and since then the development of new classes has been slow o Their relative effectiveness, coupled with few side effects resulted in their widespread, global use in the treatment of bacterial infection.
- Which, alongside their widespread use in the farming industry has led to many bacteria becoming resistance to them
- Antibiotic resistance is the ability of a bacteria to become resistant to AB they were previously sensitive to
- Multiple drug resistant bacteria result in the death of more than 25,000 people worldwide (CDC)
Gram staining method
- Gram-positive bacteria have a thick mesh-like wall made up of peptidoglycan
- (50-90% of cell envelope) whereas Gram-negative bacteria have a thinner layer (10% of cell envelope)
-
Crystal violet (primary dye)
- CV+ ions and Cl- ions penetrate the cell wall of both Gram-positive and Gram-negative bacteria
- CV+ ion interacts with negatively charged components staining the cell purple
-
Iodine (trapping agent)
- Iodine (I- or I3-) interacts with CV+ and forms large complexes of crystal violet and iodine (CV-I within the inner and outer layers of the cell
-
Alcohol (decolouriser)
- Gram negative cell loses its outer lipopolysaccharide membrane and the inner peptidoglycan layer is left exposed
- CV-I complexes washed from gram-negative cell along with outer membrane
- In contrast, gram-positive cell becomes dehydrated from an ethanol treatment
-
Carbachol fuchsin (counter stain)
- Wash
- Washing away carbachol from gram positive bacteria

Why can mycobacteria e.g. M tuberculosis not be visualised with gram stain?
• High cell wall lipid so no dye penetration • Use of acid fast stain instead
Why can treponema pallidum not be visualized with gram stain?
• Too thin to see • Use of dark-field microscopy or fluorescence antibody instead
Why can mycoplasma pneumonia not be visualised with the gram stain?
• No cell wall, small • No other alternative methods
Why can legionella pneumophila not be visualised with gram stain?
• Poor uptake of red counterstain • Increased duration of counterstain to compensate
Why can chlamydia not be visualised with gram stain?
• Intracellular, too small • Inclusion of bodies in infected cell cytoplasm
Draw out the gram positive structure and describe it
- Envelope consists of a single plasma membrane internal to a thick layer of PG (15-180 nm thick) with a wall of teichoic acid on top

Draw out the gram negative structure
- Inner membrane
- Thin peptidoglycan layer in the inner periplasmic space
- 2nm thick as opposed to 15-80 nm thick for gram-positive
- Outer membrane contains lipopolysaccharide (LPS)
- LPS = endotoxin

Define a peptidoglycan and its function
- Structure
- Glycan layer of alternating N-acetylglucosamine sugars and N-acetylmuramic acid residues connected by 1,4-glycosidic bonds
- Each MurNac residue is bonded to a peptide chain of 3-5 alternating L and D amino acids
- Precise composition differs between bacteria
- Peptide chains are connected to adjacent chains by peptide cross links
- DIffers in sructure between gram-positive and gram-negative bacteria
- Function
- Rigid support of the cell
- Maintenance of cell shape
- Resistance to osmotic pressure, preventign changes in bacterial cell volume
How do beta-lactam antibiotics target peptidoglycans? Outline the mechanism and the effect. Which gram group is more susceptible?
- PG is expressed only in bacteria, making it a good target for antibiotic action as host cells are unaffected
- Beta lactam antibiotics such as penicllin, carbapanems and cephalosporins inhibit PG syntehsis
- Mechanism
- They first bidn to one of many beta-lactam binding proteins
- They inhibit the transpeptidase enzyme that forms the peptide crosslinks between the peptide chains
- Effect
- This prevents PG synthesis is new bacterial cells, having a bacteriostatic effect
- Bacteriostatic effect = reducing bacterial division
- Their bactericidal effect is mediated by the activation of autolytic enzymes in the cell wall, leading to bacterial lysis
- This prevents PG synthesis is new bacterial cells, having a bacteriostatic effect
- Effectiveness
- Less effective for gram negative bacteria as they have a layer of LPS preventing penetration and making PG less accessible

Mechanism of lysozyme-mediated destruction of bacteria
- Lysozyme = enzyme in human tears
- Cleave sglycosoidic bonds in the glycan backbne of PG
- Bacterial cell loses osmotic resistance and thus swells and lyses in low osmolarity solution
- Mechanism of antimicrobial defence associated with the barriers of innate immunity
Describe the gram negative outer membrane
- Description
- Lipid bilayer with an asymmetric chemical distriution
- Inner leaflet made of phospholipid whereas outer leaflet is mainly made of lipopolysaccharide (LPS)
- Functions
-
Permeability barrier against compounds
- Bile
- Antimicrobials such as bile and antimicrobials
-
Produces outer membrane vesicles (OMVs)
- Host antibodies so they bind to the vesicles instead of the bacterium thus acting as an immune decoy mechanism
- Target for insertion of membrane attack complex
- Mediates bacterial lysis in terminal effector stage of complement pathway
-
Permeability barrier against compounds
Which gram-stained bacteria are lipopolysaccharides found? Describe their structure and function of each subcomponent
- Gram negative
- Lipopolysaccharides = macromolecules consisting of lipids and polysaccharides that are expressed in the outer membrane of the gram-negative envelpoe
- Structure
- Lipid A
- Fatty acids and disaccharide-diphosphate group embeded in the lipid bilayer of the outer membrane
- Endotoxin component of LPS
- Core polysaccharide
- Inner core of five sugars linked to lipid A via ketodeoxyoctulonate (KDO) and outer core sugars
- O-antigen
- Polysaccharide chain attached to core polysaccharide
- Core plyscharide is made up of a repeating oligosaccharide unit consistign of 3-5 sugar residues
- Variable in length and composition
- Used to identify bacterial species such as Neisseria genus which have a non-enteric O-antigen (non-O-antigen)
- Polysaccharide chain attached to core polysaccharide
- Lipid A

Which gram-type will porins be found on? Outlien their structure and function. Which antibiotics can pass through it?
- Porins = channel proteins in the outer memrbane of Gram-negative bacteria and mycobacterium
- Facilitates entry of hydrophilic substances into the periplasmmic space
-
Hydrophilic drugs enter through it
- Beta lactams
- Tetracycline
-
Hydrophobic enter by diffusion (MA)
- Aminoglycosides
- Macrolides
-
Hydrophilic drugs enter through it
-
Structure
- Made from polyppetides that assemble into beta-barrel domains and form the pore channel
- Size of around 600 Daltons
- Antibiotics must be smalelr than this to pass through
- Mutations madiate resistance
Which Gram stain can Type 3 secretion systems be found? Define their structure and function
- In cell wall of gram-negative bacteria
- Used to inject bacterial toxins into the host cell cytoplasm
- Structure
- Over 20 different proteins assemble to form the secretion system
- Span the inner and outer membrane
Which gram type has flagella? Defien theri structure and function
- Both gram negative and gram positive
- Description
- Flagella = long filament extending from the bacterial surface that drives cell motility/locomotion
- Conformational changes in the protein machinery drive rotation of the filament, propelling bacteria through aqueous solution
- Function
- Chemotaxis
- Directional movement in response to a chemical stimulus
- Facilitating movement towards nutrients
- Chemotaxis
- Structure
-
Basal body
- Protein complex embedded in cell envelope that drive smovement via energy from teh discharge of a proton gradient
- Utilises ATP synthase
-
Hook
- Made of flagellin E
- Length of 60 nm
- Filament
- Composed of 20,000 to 30,000 flagellin subunits in a helical arrangement
-
Basal body

Which gram type has pilli? Describe its structure and function
- Both gram positive and gram negative
- Pili are filaments on the bacterial surface made of pilin subunits in a helical arrangment
- Functions
-
Attachment
- Faciliates adherence to host surface at start of infection
- Retraction of pilus towards receptors
- Importance highlighted in aivurlent mutations of Neisseria gonorrhea that lack pilli o receptors on surface of host cells
- Facilitates adherence to host surface at start of infection
-
Conjugation
- Sex pilus facilitates the transfer of plasmid DNA between donor and recipient bacterium
-
Attachment
Define bactericidal
- Usually affect cell wall synthesis
- Preventign its formation and hence bacterial replication
- Cell lysis
Define bacteriostatic
- Drug that inhibit:
- DNA replication
- Protein synthesis
- Growth
- Does not kill them directly
- Host immune mechanisms
- Phagocytosis
- Only effective in replicating bacteria
Examples of bacteriostatic antibiotics
- Chloramphenicol
- Clindamycin
- Erthryomycin
- 50S
- EGMA = 50S & 30S
- 50S
- Sulfamethaxazoe
- Dihydroopterate synthase
- Tetracycline
- Trimethoprim
Examples of bactericidal antibiotics
-
Structural
-
Beta-lactams
- Cephalosporins
- Carbapenam
- Penicillin
- Vancomycin
-
Beta-lactams
-
Protein synthesis
-
Gentamycin (aminoglycosides)
- 30S
- 50S is bcteriostatic
- 30S
-
Gentamycin (aminoglycosides)
-
DNA
-
Fluoroquinolones
- Topoisomerase IV & DNA gyrase
-
Fluoroquinolones
GF = exception
Are beta lactams bacteriocidal or bacteriostatic? Discuss the structure and mechanism of action of beta-lactams
- Bacteriocidal
- Examples
- Penicllin
- Methicillin
- Cephalosporin
- Amoxicillin
- Broad spectrum
- Effective when bacteria are replicating and new wall is being synthesised
- Gram positive bacteria due to exposed peptidoglycans
- No LPS layer
- Mechanism
- Inhibition of PG synthesis activates peptidoglycan hydrolyses that breaks down the peptidoglycan layer and leads to osmotic lysis
- Half life of 1 to 2 hours
Is vancomycin bacteriostatic or bacteriocidal? Describe its structure and function as well as its toxic effects
- Structure
- Glycopeptide
- Mechanism of action
- Binds directly to the N-acetylglucosamine sugar and N-acetylglucamic acid portion of the PG
- D-alanyl-D-alanine
- Toxic effects
- Nephrotoxicity
- Ototoxicty
- Binds directly to the N-acetylglucosamine sugar and N-acetylglucamic acid portion of the PG
Describe antibiotics that affect the 50s ribosome. What is their mechanism of action?
- Structure
- Antibiotics with a membered beta-lactam ring in their structure
- Examples
-
Chloramphenicol
- Blocks action of petidyl transferase
- Erthyromyocin (macrolides)
- Blocks translocation of the 50s subunit
-
Clindamycin
- Blocks tRNA attachment
-
Linezolid
- Premature release of the mRNA
-
Chloramphenicol
- Most effective
- Gram positive and gram negative
Outline the structure and function of antibiotics that target the 30S ribosome. For each, outline if they are bactericidal or bacteriostatic.
-
Aminoglycosides
- Examples
- Gentamycin
- Most effective
-
Gram negative - aerobic
- Bacillus
-
Gram negative - facultative bacilli
- Corynebacteria and lactobacillus
-
Gram negative - aerobic
- Mechanism
- Inhibition of the initiation complex before translation
- Misreading of mRNA
- Bacteriocidal
- Creates fissures in the outer membrnae
- Examples
-
Tetracycline
- Structure
- 4 rings and 2 amine groups
- Mechanism
- Blocking the tRNA from entering the acceptor site in the ribosome
- Not specific to bacterial but is taken up preferentially by them
- Bacteriostatic
- Inhibits protein synthesis, preventing replication
- Structure
Describe an antibiotic that target mRNA. Outline its structure, MOA and whether it is bactericidal or bacteriostatic
- Rifamycin
- Structure
- Amino-modified glycoside sugar
- Example
- Rifampicins
- Most effective
- Used in TB therapy
- MOA
- Inhibits RNA polymerase
- Bacteriostatic
- Inhibits protein synthesis
- Structure
Describe the antibiotics that affect DNA synthesis, their structure and their MOA.
-
Folate synthesis
-
Sulfonamides
- Examples
- Sulfamethaxazole
- MOA
- Inhibit dihydropteroate synthase
- Not used much due to resistance
- Used in conjunction with trimethoprim
- Examples
-
Trimethiprim
- Inhibits dihydrofolate reductase
-
Combination therapy
- Reduces the emergence of resistant strains
-
Drugs act synergistically
- Causing greater inhibition together than each drug separately
-
Sulfonamides
-
Fluoroquinolines
- Structure
- Biyclic core structure
- Examples
- Ciprofloxacin
- Most effective
- Gram positive and gram negative
- Enters cells via porins
- Gram positive and gram negative
- MOA
- Inhibits topoisomerase IV in gram postive
- Inhibtis DNA gyrase in gram negative
- Toxicity
- Block GABAA receptors
- Seizures
- Convulsions
- Block GABAA receptors
- Structure
Which antibiotic can be used against mycobacterium? Outline the mechanism
-
Iconiazid
- Converted into prodrug to the active metabolite
- Blocks fatty acid synthase
- Inhibition of cell wall mycolic acid synthesis
What are the factors to consider when administering an antibiotic? When are broad-spectrum antibiotics used and what would you consider?
- When giving ABs, several factors are considered:
- Tolerance / hypersensitivity
- Type of infection
- Gram type
- Strain
- Bioavailability
- Broad spectrum
- Specific uses
-
Empirically
- When the cause of infection is unknown and there is the potnetial for acute onset of disease, then swtiched to narrow spectrum
-
Superinfections
- Mutiple bacterial infections at once
- Drug resistance to narrow spectrum
- Prophylaxis
- Immunosupressed or post-surgery
-
Empirically
- Examples: (TACQ)
-
Tetracyclines
- 30S (EC GT)
-
Amoxicillin
- Beta lactam
-
Chloramphenicol
- 50s ribosome (EC GT)
- Quinolones
- Problems
-
Destruction of the microbiata and commensals leads to:
- Resistant commensals and opportunistic pathogens
- Overgrowth of other bacteria/fungi
- Due to reduced competition
-
Destruction of the microbiata and commensals leads to:
-
Tetracyclines
- Specific uses
What are three mechanisms that a bacteria can develop resistance?
- Chromosome mediated
- Plasmid mediated
- Transpon mediated
Define chromosome mediated resistance and its significance
- Definition
- Refers to a mutation of genes encoded by the circlar chromosomal DNA
- Mutations arise spontaneously in genes that code for:
- Target protein of drug
- Transport system of the drug into the cell
- Significance
- Chromosomal mediated resistance is much less of a clinical problem than plasmid mediated resitance
- This is because the mutation rate of chromosomal genes ranges from 10-7 to 10-9
- This is much lower than the frequency of acquisition of resistance plasmids
- Chromosomal mediated resistance is much less of a clinical problem than plasmid mediated resitance
Define a transposon. Describe transposon-mediated resistance and how it arises/
- Definition
- Resistance genes transferred by transpons
- Transposon = genes transferred within/between larger pieces of DNA
- Resistance genes transferred by transpons
- Structure (TRD)
-
Transposase
- Catalyses the excision and reintegration of the transposon
-
Repressor
- Regulates the synthesis of the transposase
-
Drug resistance gene
*
-
Transposase
Outline plasmid mediated resistance and its significance.
- Definition
- Resistance plasmids are extrachromosomal, circular or double-stranded DNA molecules that carry the genes for a variety of bacterial resitance mechanisms
- Significance
-
Transmitted by conjugation with a high transmission as they replicate independently of the chromosome
- More copies in a cell
- Increases probability of transmission
- Occurs in many bacterial species
- Mediate resistance to multiple drugs
-
Transmitted by conjugation with a high transmission as they replicate independently of the chromosome
- Transmission of resistances genes between and within bacteria
-
Horizontal gene transfer
- Intra-genomic
- Inter-genomic
-
Horizontal gene transfer
Outline different mechanisms of intergenomic plasmid mediated resistance.
CTT
-
Conjugation
- Conjugation = transmission of genetic material from one bacterial cell to another via sex pilus that connects the cytosolic compartments
- Main mechanism for spread of resistance
-
Sex pilus proteins mediates transfer
- Coded for by conjugative plasmid which is then subject to transmission
- Non-conjugative plasmids can be transferred alongside conjugative plasmids
- Common in high density bacterial populations
- Bacteria found in gut
-
Transduction
- Transduction = plasmid DNA in a phage is transferred to another bacterium of the same species
- Phage = bacterial virus
- Occurs between straisn fo staphylococci and streptococci
- Stages
- Phage DNA enters the bacterial cell
- Phage cuts up bacterial DNA
- Some bacterial DNA packaged into phage heads
- Bacterium lyses & new phage particles are released
- Injects a new bacterial cell
- This may be incorporated into bacterial chromosome
- Transduction = plasmid DNA in a phage is transferred to another bacterium of the same species
-
Transformation
- Transformation = uptake of DNA from the environment and incorporation of the DNA into the genome by homologous recombination
Outline how resistance to beta-lactam groups is achieved.
-
Staphylococcus aureus
- Express insensitive beta-lactam binding proteins AKA penicillin binding proteins
- Beta-lactma binding proteins = enzymes that catalyse peptidoglycan remodelling
- Transpeptidsases
- Transglycolyases
- Beta-lactma binding proteins = enzymes that catalyse peptidoglycan remodelling
- Express insensitive beta-lactam binding proteins AKA penicillin binding proteins
-
MRSA
- Acquisition of non-native gene encoding a PBP2a
- PB2A = version of penicillin binding protein
- Significantly lower affinity for beta-lactams
- This gene allows for cell-wall biosynthesis, target of beta-lactams to continue even int he presence of a typically inhibitory concentration of antibiotic
- Acquisition of non-native gene encoding a PBP2a
How can bacteria develop resistance to vancomycin?
- D-Ala-D-Ala sequence that vancomycin targets is replaced with D-Ala-D-lactate sequence
- Vancomycin is therefore unable to bind and inhibit transpeptidation during peptidoglycan remodelling/synthesis
*
How can mycobacterium develop reisstance to isoniazid?
- Mutation in the gene katG encoding catalase-peroxidase that renders the target site insensitive
- Prevents conversion of isoniazid prodrug to the active metabolite
- Active metabolite blocks fatty acid synthase and prevents inhibition of cell wall mycolic acid synthesis
- Target site modification
Which are drugs are commonly affected by resistance via porins? How does this lead to resistance?
- Porin = transmembrane proteins that form an auqoeus channel and facilitate diffusion of compounds between the bacterial cell and extracellular medium
- Examples
- Penicillin
- Erthryocin
- Macrolides
- Gentamycin
- Aminoglycosides
- Reduction in membrane porin density reduces antibiotic influx into the bacterium
What has been the predominant way for tetracycline resistance?
-
Class A tetracycline efflux pumps
- High prevalence in Enterobacteriae
- Encoded by tet(A) genes
- Expression of membrane transporter proteins that promote efflux
Describe strains of bacteria that have developed multi-drug efflux pumps (MDEPs).
- Multi-drug efflux pumps = broad specficity and thus extrude a number of different AB substrates
- Antibiotics extruded
- Tetracyclines
- Sulfonamides
- Quinolines
- Bacteria
-
MRSA
- Methicilin-resistant staphylococcus aureus
-
VRE
- Vancomycin-resistant enterococcus
-
MRSA
Define biofilm formation and its underlying mechanisms
- Biofilm = structural consortium of bacteria embedded in a self-produced polymer matrix consisting of:
- Polysaccharide
- Protein
- DNA
- Function
- Promote bacterial survival and result in chornic infection
- Increased antibacterial tolerance
- Resistant phagocytosis
- Promote bacterial survival and result in chornic infection
- How it leads to antibiotic rsistance
- Gradient of oxygen and nutrients from top to bottom resulting in slower bacterial growth at the bottom and is thought these slower growing bacteria confer AB tolerance
- Biofilms associated with higher mutation rates
- Normal mechanisms (plasmids, sex pili & conjugation bridges)
- Physical inhibition of antibiotics
- Quorum sensing
- Mechanism by which bacteria can sense cell population and modify their gene expression to those that will be most advantageous
- Uses autoinducers / pheromones
- Targeting
- Enzymes that destroy biofilm and AB to mediate entry
- Quorum sensing inhibitors
Describe natural selection in antibiotic resistance
- Driving force behind the emergnece of antibiotic resistant straisn of bacteria by natural selection
- Selection pressures provoke an increase in the numbers of ABR bacteria
Outline the factors/policies that accelerate antibiotic resistance
-
Overprescription
- Antibiotics prescribed unncessarily either out of uncertainty of the casue of a disease presentation or pressure from patietns, or for longer courses than required
- Empirical use of broad spectrum ABs
-
Non-prescriptive sale
- Many ABs can be purchased over the counter (OTC)
- Promoting inappoprriate and indiscriminate AB self-administration
- Many ABs can be purchased over the counter (OTC)
-
Non-compliance
- Patients who fail to complet a full course of antibiotic therapy more likely to promote survival of resistant bacteria
-
Directly observed therapy (DOT)
- Healthcare workers observe patiient taking the medication
- Problem for long course ssuch as TB where patietns may miss dose
-
Agriculture
- Food producers fortify animal feed with ABs to prevent infectiosn and promote growth
- Sub-optimal dose
- Kills only a few pathogens, those mutate and replicate for persistent infection
Describe the role of hospitals in contributing to MRSA
- Background
- SA = gram psotive, non-motile bacteria, catalase positive, coagulase positive
- Found in human microbiata as a commensal of the nasal mucosa
- Enters into the blood/underlying tissue
- Cutaneous or mucosal barriers broken due to wounds/surgical intervention/catheters
-
Spread between SA
- Horizontal gene transferof staphyococus chromosome casette (various genes involved)
-
MecA
- Codes for PBP-2a
- Beta-lactam resistance
- Beta-lactams inhibit 4 other PBPs (1, 2, 3 and 4)
-
MecA
- Horizontal gene transferof staphyococus chromosome casette (various genes involved)
-
Spread in hospitals due to:
-
People predisposed to infection
- Invasive procedures
- Immune compromised
- High selection
- Frequent contact between people
-
People predisposed to infection
How is resistance to chloramphenicol achieved?
- Plasmid determined enzymes
How is resistance to streptomyocin achieved?
- Chromosomally-determined alteration of target site
Outline methods to combat antibacterial resistance
- Understand the disease process
- Host pathogen interactions
- Toxin mediated disease
- Bacterial capsules
- Use the genome sequence
- Work backwards from DNA to see bacterial proteins/antigens
- Know antigenic variation prcisely
- Target antigens in combination
- Understand immunity
- Isolate memory cells
- Screen them for functional antibodies
- Clone the sequence
- Transfect into cells
- Understand complement interactions with bacteria
- Combination therapy
- Sulfamethazole and trimethoprim
- Reduced bacterial spread
- Developing new antibiotics
- Linezolid (different to isoniazid)
- Prevents formation of 30s, 50s and tRNA complex
- Gram positve bacteria specific
- May be more effective than vancomycin for treating MRSA
- Linezolid (different to isoniazid)
What are the problems associated with combatting antibiotic resistance?
-
Use of current antibiotics
- Shift in attitude towards infectious diseases
-
Drug devleopment
- Not attractive for drug companies as new drugs would be rationed so would mean lower profits
- Long process to develop
- 15 years
- Expensive
- Limited number of mechansisms that ABs can act on
- If they evolve then it is harder to develop
-
Specialised diagnosis (Longitude Prize)
- Idea to have a device that can be used in a clinic to quickly identify the cause of infection soa narrower spectrum AB can be used
- £10 million prize fund for a research time that can develop point of care diagnosis for testing the cause of infection
- Must be:
- Accurate
- Rapid
- Affordable
- Easy to use
- Potnetial one is transcriptome
- Host resposne to bacterial/viral infections is different
- Take mRNA of blood, sequence it and look for differneces in blood between bacterial adn viral
- 2 genes that are upregulated in bacteria compared to virus
Statistic on global prevalence of sepsis
- The 11 million deaths from sepsis account for one in five of all deaths around the world.
