2.1.2 Biological Molecules Flashcards

1
Q

monomer

A

a small molecule which binds to many other identical molecules to form a polymer

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2
Q

polymer

A

a larger molecule made up of monomers chemically bonded together

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3
Q

covalent bond

A

strong bond formed when electrons are shared between 2 atoms

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4
Q

condensation reaction

A

occurs when 2 molecules are joined together with the removal of water
a covalent bond is formed

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5
Q

hydrolysis reaction

A

splitting a polymer apart with the addition of water
a covalent bond is broken

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6
Q

chemical elements of carbohydrates

A

carbon, hydrogen, oxygen

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7
Q

monomer of carbohydrates

A

monosaccharide (eg. glucose)

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8
Q

polymer of carbohydrates

A

polysaccharide (eg. glycogen)

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9
Q

chemical elements of proteins

A

carbon, hydrogen, oxygen, nitrogen (sulfur)

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10
Q

monomer of proteins

A

amino acid

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11
Q

polymer of proteins

A

polypeptide (eg. haemoglobin)

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12
Q

polypeptide

A

many amino acids joined together by peptide bonds

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13
Q

chemical elements of nucleic acids

A

carbon, hydrogen, oxygen, nitrogen, phosphorus

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14
Q

monomer of nucleic acids

A

nucleotide

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15
Q

polymer of nucleic acids

A

DNA
RNA

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16
Q

chemical elements of lipids

A

carbon, hydrogen, oxygen

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17
Q

chemical symbol for calcium ion

A

Ca 2+

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18
Q

functions of Ca 2+

A

nerve transmission
muscle contraction
bone formation
cofactor in blood clotting

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19
Q

chemical symbol for sodium ion

A

Na+

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20
Q

functions of Na+

A

nerve transmission
affects reabsorption of water in kidneys

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21
Q

chemical symbol for a potassium ion

A

K+

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22
Q

functions of K+

A

nerve transmission
in guard cells as a part of the stomatal opening mechanism

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23
Q

chemical symbol for hydrogen ion

A

H+

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24
Q

functions of H+

A

involved in ATP formation in photosynthesis & respiration

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25
chemical symbol for ammonium
NH4 +
26
functions of NH4 +
needed for the production of nitrates by nitrifying bacteria produced in the deamination of amino acids
27
chemical symbol for nitrate
NO3 -
28
functions of NO3 -
used as a source of nitrogen in plants to make amino acids absorbed by root hair cells
29
chemical symbol for hydrogen carbonate
HCO3 -
30
functions of HCO3-
involved in the transport of CO2 regulation of blood pH
31
chemical symbol for chloride
Cl-
32
functions of Cl-
cofactor for amylase enzyme chloride shift in red blood cells
33
chemical symbol for phosphate
PO4 3-
34
functions of PO4 3-
bone formation component of ATP and nucleic acids component of phospholipids
35
chemical symbol for a hydroxide ion
OH-
36
functions of OH-
regulation of blood pH
37
polar molecule
uneven charge distribution partial positive and negative charges which do not cancel out
38
structure of water
covalent bonds within one molecule. hydrogen bonds between the molecules
39
water is a liquid at room temperature
provide a habitat a major component of tissues reactions medium for chemical reactions effective transport medium
40
properties of water
**chemical:** polar molecule - uneven charge distribution hydrogen bonds between water molecules hydrogen bonds are weak, large number of bonds collectively strong **physical:** ice insulates water below/ice freezes liquid water is more dense than solid water (ice) solvent for polar molecules cohesion adhesion high surface tension transparent
41
water is more dense than ice
ice floats so ponds are insulated against extreme temperatures which decreases heat loss - aquatic organisms have a stable environment ice creates another habitat for animals e.g. polar bear
42
structure of ice vs water
ice: open lattice structure, hydrogen bonds are stable water: hydrogen bonds break and reform
43
water is a solvent for polar molecules
molecules can move around in a solution and react together molecules and ions can be transported when dissolved removal of waste
44
water and non-polar molecules allow hydrophobic interactions to occur
allows tertiary structure of proteins to form allows phospholipid bilayer to form
45
cohesion
the attraction of water molecules to one another
46
surface tension (of water)
the surface of water's ability to resist force
47
cohesion and surface tension enables
columns of water to be pulled up the xylem insects to walk on water
48
water has a high specific heat capacity
hydrogen bonds restrict the movement of water molecules so a large amount of energy is required to raise the temperature
49
high specific heat capacity of water means
water does not warm up or cool down easily water keeps a stable temperature, giving aquatic organisms a stable environment in which to live gases remain soluble in water
50
water has a high latent heat of vaporisation
hydrogen bonds mean large amounts of energy are required for water to evaporate
51
high latent heat of vaporisation in water
helps keep temperature stable and cool organisms plants are cooled in transpiration
52
general formula for carbohydrates
Cx(H2O)y
53
types of carbohydrates
monosaccharides, disaccharides, polysaccharides
54
functions of carbohydrates
energy source energy store structural role part of larger molecules
55
general formula for monosaccharides
(CH2O)n where n = 3-9
56
properties of monosaccharides
soluble in water -polar OH groups insoluble in non-polar solvents tastes sweet
57
isomers of monosaccharides
same molecular formula, different structural formula e.g. alpha glucose and beta glucose
58
displayed formula of alpha glucose
OH group is below the plane of the axis
59
role of alpha glucose
energy source component of starch and glycogen - acts as an energy store
60
displayed formula of beta glucose
OH group is above the plane of the axis
61
role of beta glucose
energy source acts as a component in cellulose - provides structural support in plant cell walls
62
displayed formula of ribose
4 OH groups
63
role of ribose
component of RNA and ATP
64
displayed formula of deoxyribose
3 OH groups, 1 H off carbon-2
65
role of deoxyribose
component of DNA
66
solubility of glucose
freely soluble in water - polar soluble in blood plasma, can be transported to cells for uptake
67
disaccharides
formed by two monosaccharides joining together in a condensation reaction a glycosidic bond is formed
68
general formula for disaccharides
C12H22O11
69
maltose
alpha glucose + alpha glucose formed in a condensation reaction with the removal of water
70
sucrose
alpha glucose + frictose
71
lactose
alpha glucose + beta glucose
72
cellubiose
beta glucose + beta glucose
73
reducing agent
a chemical species that donates an electron to an electron recipient, reducing the recipient
74
oxidising agent
a substance that gains an electron from a reducing agent, oxidising the reducing agent
75
test for reducing sugar
add benedict's solution heat in water bath
76
positive result for reducing sugar
colour change from blue to green-yellow-orange to brick red
77
qualitative
a positive or negative result tells us if a particular substance is present
78
quantitative
tells us how much of a substance is present
79
why is **excess** benedict's used when testing for reducing sugar
to ensure all sugar will react
80
equation for volume of stock solution required
(total volume wanted/conc. of stock solution) x conc. wanted
81
validity
it is suitably designed to answer the question being asked testing what is being tested
82
polysaccharides
polymers which consist of hundreds or thousands of monosaccharides joined by condensation reactions resulting in glycosidic bonds
83
examples of polysaccharides
cellulose, glycogen, starch, callose
84
starch
polymer of alpha glucose made up of two components, amylose and amylopectin
85
amylose
1,4 glycosidic bonds between carbon-1 and carbon-4
86
amylose helix
coil = more compact shape held together by hydrogen bonds
87
properties of lipids
insoluble in water high in energy
88
differences between saturated and unsaturated fatty acids
S: single C-C bonds, max. hydrogens, solid at room temperature, high melting point U: 1 < double C=C bond, not max. carbons, low melting point
89
structure of a triglyceride
3 fatty acids, 1 glycerol
90
functions of triglycerides
energy source energy store insulation buoyancy protection
91
triglyceride as an energy source
ester bonds can be hydrolysed to form 1 glycerol and 3 fatty acids used in respiration and release energy
92
triglyceride as an insoluble energy store
can be stored without affecting the water the water potential of cells
93
triglycerides as an energy store: high energy density
they have a greater proportion of hydrogen atoms compared to carbohydrates
94
triglycerides as a heat insulator
whales have blubber (adipose tissue)
95
triglycerides as an electrical insulator
fatty myelin sheath around some neurones. insulates and increases conduction speed of impulses
96
triglycerides - buoyancy
fat is less dense than water aquatic organisms can float. eg. frogs
97
triglycerides - protection
fat acts as a shock absorber around delicate organs
98
test for lipids
emulsion test
99
structure of a saturated fatty acid
no double bonds
100
structure of an unsaturated fatty acid
at least one double C=C bond
101
simplified structure of a phospholipid
hydrophilic phosphate head hydrophobic fatty acid tail
102
structure of a phospholipid
103
amphipathic
both hydrophobic and hydrophobic parts
104
phospholipid fatty acid tails
non-polar hydrophobic move away from water and interact with each other
105
phospholipid phosphate heads
polar hydrophilic interact with water extracellularly and intracellularly
106
structure of cholesterol
107
function of cholesterol
regulates and maintains the fluidity of the membrane
108
cholesterol at high temperatures
it stabilises the membrane and raises the melting point
109
cholesterol at low temperatures
it intercalates between the phospholipids and prevents clustering
110
without cholesterol, the bilayer is too hot
too fluid/flexible won't hold shape
111
functions of proteins
an essential component of cell membranes antibodies enzymes form structural components of animals
112
structure of an amino acid
amine group, carboxylic group, hydrogen atom, R group
113
a zwitterion
a compound with no overall electrical charge, which contains separate parts which are positively and negatively charged
114
a buffer
a substance that helps to resist large changes in pH
115
basis of the test for protein
a test for peptide bonds colour formed by a complex between the nitrogen atoms in the peptide chain and the Cu 2+ ions
116
primary structure of a protein
sequence of amino acids held together by peptide bonds
117
secondary structure of a protein
folding of amino acid chain into alpha helix or beta pleated sheet due to hydrogen bonding between amino acids
118
tertiary structure of a protein
folding of the secondary structure to form a specific (3D) shape. 4 different types of bonding/interactions can hold this shape together
119
two types of secondary structure of a protein
alpha helix beta pleated sheet
120
quaternary structure of a protein
a protein which is made up of 2 or more polypeptide chains. 4 different types of bonding/interactions can hold this shape together
121
examples of fibrous proteins
keratin, elastin, collagen
122
examples of globular proteins
antibodies, hormones, enzymes
123
4 different types of bonding/interactions in protein structure
ionic disulfide hydrogen hydrophilic/hydrophobic
124
primary structure of a fibrous protein
repetitive regular sequence of amino acids
125
primary structure of a globular protein
irregular amino acid sequence
126
shape of fibrous protein
long parallel polypeptide chains cross-linked at intervals from long fibres
127
shape of globular proteins
folded into a spherical shape
128
stability of fibrous proteins
stable structure - unreactive
129
solubility of fibrous protein
insoluble
130
solubility of globular proteins
easily soluble - hydrophilic R groups point outwards
131
stability of globular proteins
relatively unstable structure
132
function of fibrous proteins
support + structural functions
133
function of globular proteins
metabolic functions
134
properties of collagen
provides high mechanical strength due to covalent bonds linking triple helix molecules together flexible and insoluble found in the outer wall of artery where it prevents bursting under high pressure
135
properties of elastin
strong and can stretch and recoil without breaking insoluble found in alveolar walls where it allows them to stretch during inhalation and recoil during exhalation to expel air found in blood vessel walls, skin
136
properties of keratin
very strong molecule - lots of disulfide bonds, the degree of these determines flexibility insoluble mechanical protection waterproof found in hair, skin, nails, claws, hoofs, scales, horns, fur, feathers