2 - Cells And Immune System Flashcards
Explain the Order of cell fractionation
1- chop up fresh liver tissue in ice cold buffer solution
2- put the chopped tissue into a blender or homogeniser which breaks open the cells
3- filter the mixture to remove the debris
4- pour the mixture into tubes and spin very quickly in a centrifuge. The Denser parts of the mixture get spun to the bottom of the tube where they form a pellet called the sediment
5- the liquid layer on top (the supernatant) is pored into a fresh tube leaving the sediment behind, thus contains the nuclei
6- this supernatant may then by spun again at a faster speed to produce a sediment containing mitochondria
What does the sediment in cell fractionation spun at a lower speed contain
Nuclei
What does the sediment in cell fractionation spun at a medium speed contain
Mitochondria
What does the sediment in cell fractionation spun at a higher speed contain
Ribosomes, membranes
What is the name of the liquid layer on top of the sediment in cell fractionation
Supernatant
Why does it have to be cold in cell fractionation
To stop enzymes activity which might break down organelles
Why does it have to be isotonic in cell fractionation
(Same Water potential)
To prevent organelles bursting / shrinking due to osmotic loss or gain
Why does it have to be buffered in cell fractionation
No PH function which may alter structure/functioning of enzymes/organelles
What type of lenses do microscopes use
Convex
What is light microscopes resolution
0.2 micrometers
What resolution does an electron microscope have
0.1 manometer
Why does electron microscopes have a higher resolution
They have a shorter wavelength
How to get from m to mm
X1000
How to get from mm to um
X1000
How to get from um to nm
X1000
Magnification equation
Magnification = size of image / size of object
What is resolution
The resolving power is the minimum distance apart the 2 objects can be in order for them to appear as separate items
What does a resolution depend on
The wavelength or form of radiation
What does greater resolution mean
The greatest clarity + more precise image
What can be seen with a light microscope
Mitochondria (maybe)
Nucleus
What is the maximum useful magnification of an optical microscope
X1500
What do electron microscope use to from an image
Electrons
What is the maximum useful magnification of an electron microscope
X 1 500 000
How do you temporarily mount a specimen on a slide
1) pippett a small amount of water onto a slide, then use tweezers to place a thin section of your specimen on top of the water drop
2) add a drop of stain (used to highlight objects in a cell)
3) add a cover slip - stand the slip upright on the slide next to the water droplet , then carefully tilt and lower - try not to get any air bubbles
Why do you have to be carful not to get any airbubbles under you cover slip when using a microscope
They will obstruct a view of the specimen
When using microscopes- what is the dye eosin used to make show up
Cytoplasm
When using microscopes- what is the dye iodine in potassium iodide solution used to make show up
Starch grain in plant cells
In cell fractionation why does the cell need to be put in a blender
To break up the plasma membrane and release the organelles into the solution
Why does the homogenised cell solution need to be filtered (cell fractionation)
To separate any large cell debris or tissue debris (like connective tissue, from the other organelles)
What order to the organelles in animal cells become pellets during cell fractionation
Nuclei
Mitochondria
Lysosomes
Endoplasmic reticulum
Ribosomes
In a plant cell, when do the chloroplasts come out in cell fractionation
After nuclei but before mitrocondria
How to draw specimens
Pencil
No shading / colouring (only draw the lines you can see)
Each field of view (circular diagram) should be about 3rd of a page in size
If the cells you are viewing are similar / repeatable it’s useful to draw about 4-5 only
What must you always record when drawring specimens form a microscope
Magnification
Name of specimen
Date of observation
What equipment do you need to use to a cell size of an unknown
Stage micrometer
Eye piece graticule
What is a stage micrometer
A precise rule on a slide
How to calculate the cell size of an unknown
1) calibrate - focus the stage micrometer under a low pressure - this must be done for each magnification (objective lens)
2) work our how many eye peice divisions equal every stage division
3) remove the stage micrometer + place slide containing cells under microscope + count the number of eyepiece divisions under one microscope
What are TEMS
Transmission electron microscopes
Use electromagnets to focus a beam of electrons, which is then transmitted through the specimen
Denser parts of the specimen absorb more more electrons, which makes them look darker on the image you end up with.
Positive of TEMS
High resolution image
You can see internal structures and organelles like chloroplasts
Negatives of TEMS
They can only be used on thin specimens
What are SEMS
Scanning electron microscopes
Scan a beam of electrons across the specimen. This knocks off electrons from the specimen, which are gathered in a cathode ray tube to form an image
The image you end up with show the surface of the specimen and they can be 3D
Postives of SEMs
Can be used on thick specimens
Negatives of SEMS
Lower resolution image than TEMS
What are the 2 types of electron microscopes
Scanning
Transmission
Principles of using an electron microsope
Vacuum
Non living - smallest sample
Thin
Complex staining / preparation (have to be trained to use)
Image contains ‘artefacts’
Is a TEM or a SEM 3D
SEM - 3D
TEM - 2d
What is the result of using an electron microscope
Photomicrograph
Limitations of an electron microscope
- electron beams may destroy sample
- preparation difficulties lead to revolution problems
- photomicrograph is in ‘false colour’
Resolution of a TEM
0.1 nm
Resolution of a SEM
20nm
What does the cyto skeleton consist of
A network of fibres necessary for the shape and stability of the cell
- microfilaments
- microtubules
- intermediate fibres
What is in the cell surface membrane
- embedded proteins - involved in signalling + communication between cells
- others act as antigens for ‘self’ and foreign recognition
What is the cell wall made of in plants + fungi
Plants - cellulose
Fungi - chitin
What is the cell wall
A complex carbohydrate - freely permeable. It gives shape to cell + allows the cells content to push against it making it rigid
It acts as a defence mechanism protecting against invading pathogens
What is the vacuole
Membrane lined sac filled with cell sap
Large + permanent Maintaining turgor against the cell wall
What is the membrane of the vacuole called
The tonoplast
It’s selectively permeable ( some molecules can pass through but some can’t)
What is the role of chloroplasts
Carry out photosynthesis
What shape and size are chloroplast
Vary in shape but are typically disk shape
2-10um long and 1um in diameter
What are the 3 main features of a chloroplast
The chloroplast envelope
The grana
The stroma
What is the chloroplast envelope
Double plasma membrane surrounding the organelle- highly selective in what is allowed to enter and leave
What is the grana in chloroplasts
Stacks of up to 100 disc like structures called thylakoids
- some thylakoids have tubular extensions that join up with other thylakoids in adjacent grana
-
What happens in the grana
Where the first stage of photosynthesis (light absorption) takes place
What is within in thylakoids
Chlorophyll
What is the stroma
A fluid filled Matrix
Within the stroma are a number of other structures (eg, starch grains)
What process takes place in the stroma
Second stage of photosynthesis
(Synthesis of sugars)
How have chloroplasts adapted to their function of harvesting sunlight and carrying out photosynthesis
-Granal membrane - large surface membrane for attachment of chlorophyll, electron carriers and enzymes that carry out the first stage of photosynthesis - these chemicals are attached to the membrane in a highly ordered way.
- the fluid of the stroma possesses all the enzymes needed to make sugars in stage 2 of photosynthesis.
- chloroplasts contain DNA + ribosomes so can quickly + easily manufacture some proteins needed for photosynthesis
What is the nucleus
Large organelle surrounded by a nuclear envelope (double membrane), which contain many pores. The nucleus contains chromosomes (which are made form protein-bound linear DNA)
And another structure called nucleoles
What is the function of the nucleus
- controls cell activity (by controlling transcription of DNA) DNA contains instructions to make proteins.
- pores allows substances to move between the nucleus and the cytoplasm, the nucleolus makes ribosomes
Describe the mitochondrion
Usually oval shape - double membrane, inner in is folded to form Cristae. Inside is the matrix, which contains enzymes involved in respiration
What is the function of mitochondria
The site of aerobic respiration, where ATP is produced. Found in large numbers in cells that are very active and require a lot of energy
Describe Golgi apparatus
A group of fluid filled, membrane bound flatterend sacs.
Vesicles are oftern seen at the edge of sacs
Function of Golgi apparatus
It processes and packages new lipids and proteins.
It also makes lysosomes
Describe Golgi vesicles
A small fluid filled sac in the cytoplasm, surrounded by a membrane and produced by the Golgi apparatus
Function of Golgi vesicle
Stores lipids and proteins made by the Golgi apparatus and transports them out of the cell (via the cell surface membrane)
Describe lysosomes
A round organelle surrounded by a membrane, with no clear internal structure. It’d a type of Golgi vesicle
Function of lysosomes
Contains digestive enzymes called lysozymes.
These are kept separate form the cytoplasm by the surrounding membrane, and can be used to digest invading cells or to break down work out components of the cell.
Describe
Rough endoplasmic reticulum
A system of membrane enclosing a fluid filled space.
The surface is covered with ribosomes
Function of rough endoplasmic reticulum
Folds and processed proteins that have been made at the ribosomes
Describe smooth endoplasmic reticulum
Similar to RER - but no ribosomes
Function or smooth endoplasmic reticulum
Synthesises and processes lipids
Function of ribosome
The site where proteins are made
Describe ribosomes
Very small organelle thar either floats freely on the cytoplasm or is attached to the RER. It’s made of proteins and RNA. It’s not surrounded by a membrane
What is the structure of centrioles
Small protein tubes if microtubules
Function of centrioles
Form fibres in cell division known as spindles which separate chromosomes
What is cell differentiation
The process by which cells become specialised for differnt functions
Why do cells act and look differently
Different genes are switched on and off in each of the specialised cells
What is a tissue
+ examples
A collection of cells (not necessarily identical ones) that preforms a specific function
Eg. Epithelial tissue, muscles, nervous, connective
What is an organ
A combination of tissue that are coordinated to preform a variety of functions
What size ribosomes do eukaryotic cells have
Large (70s)
What size ribosomes do prokaryotic cells have
Small
Where is dna held and located in eukaryotic cells
In the nucleus on linear chromosomes
Where is dna held and located in prokaryotic cells
Contained within the cytoplasm held on circular DNA
What is the cell wall made of in eukaryotic cells if present
Cellulose
What is the cell wall made of in prokaryotic cells
Peptidoglycan
Eukaryotic or prokaryotic
Has membrane bound organisms
Eukaryotic
Eukaryotic or prokaryotic
May have a unduipodia
Eukaryotic
Eukaryotic or prokaryotic
May have flagella
Prokaryotic
Eukaryotic or prokaryotic
Has a nucleus
Eukaryotic
Eukaryotic or prokaryotic
Has a phospholipid bilayer cell membrane
Eukaryotic
Eukaryotic or prokaryotic
Ribosomes are the site of protein synthesis
Prokaryotic
What can first
Eukaryotic or prokaryotic
Prokaryotes
Describe prokaryotes
They have nucleic acids but not confined to a nucleus with a nuclear membrane
They don’t have mitrochondia and have smaller ribosomes
Many have flagellum
Size of bacteria
0.1 - 1.0 um
What is the cell wall made of in bacteria
Muriel (polysacccharide + peptides)
T or f
Many bacteria have a mucilaginous sli,e late r
T
How does bacteria store food
Oils and glycogen droplets
What is the significance of a virus being unliving
replicated only inside living cells of other organisms
Describe the basic structure of a generalised virus
Generic material (DNA + RNA)on a protein coat ( capsid), some have an envelope. Have glycoprotein receptor spikes on the envelopes
Describe the purpose of the glycoprotein spikes
Attach to surface of the host cell they’re infecting
Describe the purpose of a bacteriophages tail fibres
Help it to attach to host cells
T or f
Viruses are not organisms
T
How do viruses live
Using materials from living cells
Size of viruses
20 - 300nm in size
What genetic material do viruses have
DNA or RNA
Where is the genetic material in viruses
Encased in capsid, which may have attachment proteins (protein coat) some have a lipid envelope
What is in a cellulose cell wall of a plant cell
Plasmodesmata
(Channels for exchanging substances with adjacent cells)
What do plants use starch grains for
To store excess sugars
What are algal alike
Plant cells
They have the same organelles including cell wall app and chloroplasts
What are fungal cells a lot alike
Plant cells
What are the two key differences between fungal cells and plant cells
- their cells walls are made of chitin not cellulose
- they don’t have chloroplasts because they don’t photosynthesise
How have epithelial cells in the small intestines specialised to absorb food efficiently
1) the walls of the small intestines have lots of finger like projections called villi, these increase surface area for absorption
2) the epithelial cells on the surface of the villi have folds in their cell- surface membrane, called microvilli. These inc the surface area even more
3) they have lots of mitochondria to provide energy for the transportation of digested food molecules into the cells
In multicellular eukaryotic organisms, specialised cells are grouped together to form?
Tissues
Does the cytoplasm of a prokaryotic cell have membrane bound organelles
No
What is the plasma membrane mainly made of in a prokaryotic cell
Lipids and proteins
What does the cell wall do in prokaryotic cells
Supports the cell and prevents it from changing shape.
What is the cell wall made from in prokaryotic cells
A polymer called murein
Murein is a glycoprotein
What is a glycoprotein
A protein with a carbohydrate attached to it
What do some prokaryotes inc bacteria have that’s made up of secreted slime
Capsule
What does the capsule do in prokaryotic cells
Helps to protect bacteria from attach by cells of the immune system
What are plasmids
Small loops of DNA
They arnt part of the main circular DNA molecule.
Plasmids contain genes for things like antibiotic resistance, and can be passed between prokaryotes. Plasmids are not always present in prokaryotic cells.
Some prokaryotic cells have several
Where is the DNA in prokaryotic cells
Floats free in the cytoplasm
It’s circular DNA, presents as one long coiled up strand
It’s not attached to any histone proteins
What is the flagellum
It’s a long, hair like structure that rotates to make the prokaryotic cell move. Ot all prokaryotes have a flagellum some have more than one
What does it mean than viruses are acellular
They are not cells
What are viruses
Nucleus acids surrounded by proteins - there not alive
What’s smaller bacteria or viruses
Viruses
What do bacteria have that viruses done
Plasma membrane
Cytoplasm
Ribosomes
How do viruses reproduce
They invade and reproduce inside cells of other organisms,s
These are known as host cells
Describe a viruses structure
Contains a core of genetic material - either DNA or RNA
The protein coat around the core is called the capsid
Attachment proteins stick out fro, the edge of the capsid, these let the virus cling on to a host cell
How do prokaryotic cells replicate
By binary fission
Explain binary fission
1) the circular DNA and plasmids replicate. The main DNA loop is only replicated once but plasmids can be replicated loads of times
2) the cell gets bigger and the DNA loop move to opposite poles of the cell
3) the cytoplasm begins to divide( amd re cell walls begin to from)
4) the cytoplasm divides and two daughter cells are produced. Each daughter cell has one copy of the circular DNA, but can have a variable number of copies of the plasmids
How do viruses use host cells to replicate themselves
Viruses use their attachment proteins to bind to complementary receptor proteins on the surface of host cells
Differnt viruses have differnt attachment proteins and therefore require differnt receptor proteins on host cells. As a result some viruses can only infect one type of cell ( others can infect lots of differnt cells)
Because they are not allibe viruses don’t undergo cell division. Instead they inject their DNA or RNA into host cell - thus hijacked cell they uses Ito own ‘machinery’ to do the viruses work and replicate the viral partials
What are the 3 main important features of mitosis
Growth ( from zygote to embryo to human)
Differentiation ( cells become specialised from stem cells + genes start to tell cells what to do )
Repair ( to repair and replace damages tissue)
Explain replication in virsuses
Viruses are non living so they attach to their host cell with attachment proteins on their surface
They inject their nucleic acids into the host cell
The genetic information on injected boreal nucleic acid provided instruction for the host cell to start producing viral components eg. Enzymes, nucleic acid
Explain how a virus invades a cell
1) a virus enters a cell
2) substances in the cell begin to strip off the viruses outer coat of proteins
3). Nucleic acids in the virus is released
4) nucleic acid get into cells chemical manufacturing system
5) the cell ‘ignors’ it’s own chemical needs + switched to making new viruses
6) the cell is sometimes destroyed in the process - many of the new viruses are released to infect other cells
How often does mitosis occur
Every 24 hours
What is mitosis
The division of the nucleus to make an exact cope of the DNA in a parent cell
Are daughter cells always identical to their parent cells in mitosis
Most of the time
Apart from extremely rare cases of mutations
What is the phase before mitosis occurs called
Interphase
What happens in prophase
chromosomes become shorter and fatter each one consisting of a pair of identical chromatids joined at the centromere
Tiny bundles of proteins called centrioles start moving to opposite ends of the cell forming a network of protein fibres across it called spindle.
Nucleolus shrinks and eventually disappears
Nuclear envelope breaks down and chromosomes lie free in the cytoplasm
What happens in metapahase
Chromosomes arrange themselves on the equator of the spindle but not in homologous pairs
Chromosomes appear attached to the spindle at their centromeres
What happens in anaphase
Centromere splits into two each centromere having its own chromatid
Spindle fibres contract and pull the chromatids apart centromere first - this makes chromatids appear v-shaped
Chromatids now become chromosomes with their centromere leading
What happens in telophase
Chromatids reach the opposite poles of the cell at the centrioles - they uncoil and become long and thin again. They are now called chromosomes again
Nuclear envelope + nucleolus reform - so now two nuclei
Spindle fibres degenerate
Chromosomes develop into thread lines structure of chromatin
Centrioles replicate
Cytokinesis follows this phase
Cytoplasm divides (cytokinesis) and there are no two genetically identical daughter cells
What are the 4 stages of mitosis
Prophase
Metaphase
Anaphase
Telophase
What is the phase interphase divided into
3 separate growth staged
G1
S
G2
What happens in G1 of interphase
Cell grows and new organelles and proteins are mad e
What happens in S of interphase
Cell replicated its DNA ready to divide by mitosis
What happens in G2 (gap phase 2) of interphase
Cell keeps growing and proteins needed for cell division are made
Describe interphase
The cell carries out normal functions, but also prepares to divide .
The cells DNA is unravelled and replicated to double its genetic content. The organelles are also replicated so it has spare ones and it’s ATP content is increase ( atp provides the energy needed for cell division)
What is mitosis and the cell cycle controlled by
Genes
Normally when cells have divided enough times to make enough nrew cells they stop.
How does this change if there is a mutation in a gene that controls cell division
The cell can grow out of control
The cells keep pm dividing to make more and more cells wich form a tumour
Cancer is a tumour that invades surrounding tissue
How are some, treatments for cancer designed to control the rate of cell division
By disrupting the cell cycle
This kills the tumour cells
Why is cancer treatment that disrupts cell cycle bad
The treatment doesn’t distinguish between tumour cells and normal cells
They kill normal body cells that are diving.
However tumour cells divide more frequently than normal so the treatment is more likely to kill tumour cells.
Examples of cancer treatment that disrupted the G1 phase
Chemotherapy prevents the synthesis of enzymes needed for DNA replication. If these arnt produced, the cell is unable to enter the synthesis phase(s) disrupting the cell cycle and forcing the cell to kill itself
Examples of cancer treatment that disrupted the S phase
Radiation and some drugs damage DNA. At several points in the cell cycle the DNA in the cell is checked for damage. If damage is detected the cell will kill itself - preventing further tumour growth
Explain how you can prepare a root Tip to observe mitsosis
1) cut 1cm from the top form a growing root.
2) prepare a boiling tube containing 1M hcl acid and put it in a water bath at 60°C
3) transfer the root tip into the boiling tub and incubate for 5 mins
4) using a pipette rinse the root tip with cold water and leave to dry on a paper towel
When observing mitosis experiment, why does it need to be the tip
That’s where the growth occurs so it’s where mitosis takes place
How would u use the prepared root tip to observe mitosis
1) place root tip on microscope slide and cut 2mm from the very top. Get rid of the rest
2) use a mounted needle to break the top open and spread the cells out thinly
3( add a few drops of stain and leave for a few min
4) place a cover slip over the cells and push down firmly to squash the tissue.
5) now you can see mitosis under an optical microscope
Why do u add stain when observing mitosis
+ examples of stain
Makes the chromosomes easier to see.
Toluidide blue O, ethano-orcein, feulgen
Why do u neeed to push the cover slip down firmly when obeserving mitosis s
It will make the tissue thinner and allow light to pass through.
But you can’t smear rhe cover slip sideways as you will damage the chromosomes
How do u use an optical microscope to observe the prepared root tip
1) start by clipping the solid onto the stage
2) select lowest powered objective lense
3) use coarse adjustment knob to bring the stage up to just below the objective lense
4) look down the eyepiece (which contains the ocular lense), use coarse adjustment knob to move stage downward away from the objective lens until the image is in focus
5) adjust focus with th e fine adjustment knob, until you get a clear image of what’s on the slide
6) you can then swap to an higher powered objective lense if you need greater magnification
What is mitotic index
The proportion of cells undergoing mitosis
How do you calculate mitotic index
Number of cells with visible chromosomes
____________________________________________
Total number of cells observed
What is an eyepiece graticule and where is it fitted
A transparent ruler with numbers but no units
Onto the eyepiece
What is a stage micrometer rand where is it placed
A microscope slide with an accurate scale with units and is used to work out the value of division on the eyepiece graticule at a particular magnification
On the stag e
What are artefacts
Things that you can see down the microscope that arnt part of the cell or specimen that your looking at
Eg, dust , airbubbles and fingerprints, inaccuracies caused by squashing and staining your sample
When are artefacts most commen
In electron micrograph because the specimens need lots of preparation.
At first how could scientists distinguish between artefacts and organelles
By repeatedly preparing specimens in differnt ways.
If it can be seen in one preparation but not another it if most likely and aryifact
What is diffusion
The tendency of a gas/liquid to spread out from a high conc. to a low conc. till it reaches equilibrium
(Net movement of particles from high to low conc.)
T or f
Simple diffusion is active
F
It’s passive
Describe the elements of simple diffusion
Passive
Motion is random and constant
Particles bounce of each other + the vessel
All particles will distribute themselves evenly as a result of diffusion
What is ficks law
Diffusion is proportional to the difference in conc between two regions (the conc gradient)
It’s incorrect to say diffusion is proportional to conc
What are some factors that affect rate of diffusion
Temperature
Conc. gradient
Stirring / moving
Surface area (eg, alveoli / villi)
Distance / thickness (short diffusion pathway)
Size of molecule ( Small diffuse fastest)
Is substances are insoluble in ……, they cannot easily cross the mebrane
What do they use?
Lipids
They use transport proteins and transport water soluble substances that are insoluble in lipids
What is facilitated diffusion used for
Large polar molecules. Eg. Glucose and amino acids
Charged ions
Is facilitated diffusion passive or active
Passive
But molecules use proteins instead of passive between the phospholipids
What are the 2 types of proteins in facilitated diffusion
Carrier proteins
Channel proteins
What is a protein channel
Pores in membrane
Many only let 1 type of molecule through
There water filled hydrophilic channels
What is a carrier proteins
Molecules fit in at membrane
Proteins change shape to pass molecules through
What surrounds cells
Cell surface membrane
What is a the cell surface membrane
The barrier between the cell and its environment controlling which substances enter and leave the cell.
There partially permeable.
What does partially permeable mean
They let some molecules through but not others
How can substances move across the cell surface membrane
By diffusion
Osmosis
Active transport
What do membranes around organelles do
They act as a barrier between the organelle and the cytoplasm
They are also partially permeable
When was the fluid mosaic model suggested
1972
Describe the fluid mosaic model
Phospholipid molecules form a continuous double layer (bilayer)
The bilayer is fluid because the phospholipids are constantly moving
Cholesterol molecules are present within the bilayer
Protein scattered through the bilayer like tiles in a mosaic, these include channel proteins and carrier proteins which allow large molecules and ions to pass through the membrane. Receptor proteins on the cell surface membrane. Allow the cell to detect chemicals release from other cells. The chemicals signal to the cell to respond in some way.
some proteins are able to move sideways through the bilayer, while others are fixed in position
.
It cell membrane, some proteins have a polysaccharide chain attached. What are these called?
Glycol proteins
Some lipids in cell membranes have polysaccharide chain attached. What are these called?
Glycolipids