1.3 Genome, Mutations, Evolution, Genomic Sequencing Flashcards

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1
Q

describe what is meant by the term genome

A

the genome of an organism is its entire hereditary information encoded in DNA

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2
Q

what a genome is composed of

A

genome is made of genes and and other DNA sequences that do not code for a protein

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3
Q

what type of gene sequence make up the majority of a eukaryotic genome

A

most of the eukaryotic genomes consists of non coding sequences

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4
Q

two forms of non translated RNA

A
  • regulation of the transcription of a gene

- sequences are transcribed but never translated

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5
Q

describe the term “mutation”

A

mutations are changes in the genomes (dna) that can result in no protein or altered protein being exposed or synthesized.

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6
Q

describe what a single gene mutation is and how it is caused

A

single gene mutations alter the dna nucleotide sequence of a single gene as a result of substitution, deletion,
insertion of nucleotides.

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7
Q

name three different type of single gene mutations caused by nucleotide substitutions

A

substitution - one nucleotide is replaced with another and only one amino acid is altered.

deletion - one nucleotide is removed from nucleotide sequence, every amino acid after point of deletion will be put out of sequence.

insertion - nucleotide is added to nucleotide sequence, every amino acid after point of insertion will be put out of sequence.

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8
Q

single nucleotides substitutions can result in missense, nonsense & splice site mutations.
describe the effects of a missense mutation on the amino acid sequence and on the structure of the final protein produced

A

missense mutation involves only one amino acid changed to another amino acid. May result in non functional protein or have very little effect on protein.

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9
Q

describe the difference between coding and non coding DNA regions

A

coding DNA are sequences of DNA bases that code for proteins.
non coding DNA are sequences of DNA that do not code for proteins.

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10
Q

describe the effects of a nonsense mutation on mRNA transcript and the effect on the structure of final protein produced

A

nonsense mutations create a premature stop codon which can stop protein synthesis,
results in a shorter protein missing many amino acids.

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11
Q

describe the effect of a splice site mutation on a mature mRNA transcript

A

splice site mutations can result in an intron appearing in a mature mRNA transcript molecule and some exons not being included in a mature mRNA transcript after RNA splicing.
May result in non functioning protein.

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12
Q

describe the effects of frameshift mutations on the amino acid sequence and on the structure of final protein produced

A

frame shift mutations are caused by insertions and deletions of nucleotides.
All of the codons and amino acids after the point of mutation is altered
This has a major effect on the protein produced

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13
Q

describe what is meant by a chromosome mutation

A

during gamete formation (meosis) the pairs of chromosome line up on the equator. This is the point where you get mutations involving changes to the chromosome structure.

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14
Q

describe each type of chromosome mutation

A

duplication - section of chromosome is added to its homologous partner

deletion - section of chromosome is removed.

translocation - section of chromosome is added to chromosome which is not its homologous partner.

inversion - section of chromosome is reversed

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15
Q

state the effect of chromosome mutations on an organism

A

the substantial changes caused by chromosome mutations can be lethal to an organism

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16
Q

explain the importance of mutations and gene duplication on evolution

A

this type of mutation (duplication) is thought to be a major driving force during evolution as it may confer advantages to a organism and increase its adaptability and subsequent chances of survival.
Mutations provide new genetic material for variation. This is done by mutations producing new alleles. without mutations there would be no new variation.

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17
Q

define the term evolution

A

evolution describes the changes in organisms over many generations as a result of genomic variations. This can lead to offspring that are better adapted to survive in its environment than the previous generation.

18
Q

describe the process natural selection

A

natural selection is the non random increase in frequency of dna sequences that increase survival and the non random reduction in frequency of deleterious sequences

19
Q

describe the changes in phenotype frequency as a result of stabilising, directional and disruptive selection

A

stabilising selection - average phenotype is selected for and extremes are selected against, leads to a reduction in genetic diversity

directional selection - one extreme phenotype is selected for, common during environmental change

disruptive - two or more extreme phenotypes, can result in population being spilt into two distinct groups

20
Q

explain why natural selection is more rapid in prokaryotes

A

Natural selection is more rapid in prokaryotes. Prokaryotes can exchange genetic material
horizontally, resulting in faster evolutionary change than in organisms that only use vertical
transfer

21
Q

explain the difference vertical and horizontal gene transfer

A

vertical gene transfer - transfer of genes from parents to offspring, from one generation to the next by sexual or asexual reproduction

horizontal gene transfer - where genes are transferred between individuals in the same generation

22
Q

define the term species

A

a group of organisms capable of interbreeding and producing fertile offspring which normally doesn’t breed with other groups

23
Q

define the term speciation

A

is the generation of new biological species by evolution as a result of isolation, mutation and selection

24
Q

describe the importance of isolation barriers during speciation

A

isolation barriers prevent gene flow between two sub-populations during speciation

25
Q

describe the stages of speciation

A
  • all organisms in the population can interbreed and produce new offspring.
  • an isolation barrier forms causing sympatric or allopatric speciation, gene flow between both sub populations is prevented.
  • in each population, over a long period time, different mutations in each population occur, some mutations may be favourable to the organism.
  • if isolation and selections occur over many generations, the changes are enough to prevent interbreeding and the production of fertile offspring. At this point a new species has been formed.
26
Q

describe allopatric speciation

A

occurs in sub populations living in separate areas and involves a geographical barrier.

27
Q

describe sympatric speciation

A

occurs in sub populations living side by side and involves behavioural or ecological barriers.

28
Q

describe what can be determined by genomic sequencing

A

genomic sequencing is the process by which the sequence of nucleotide bases can be determined for individual genes and entire genomes.

29
Q

describe the role of computers in genomic sequencing

A

computer programs can be used to identify base sequences by looking for sequences similar to known genes.

30
Q

state what is required to compare genomic sequence data

A

to compare sequence data, computer and (bioformatics) are required.

bioformatics - used on comparasion on genetic data with and within species, including looking for start and stop codons, coding sequences and mutations.

31
Q

state what the comparison of genomic sequencing data can reveal about different organisms

A

comparisons of genomes from different species reveals that many genes are highly conserved across different organisms

32
Q

state three groups of species important to society whose genomes have been sequenced

A
  • disease causing organisms
  • pest species
  • species that are important model organisms for
    research
33
Q

state what evidence can be used to determine the main sequence of events in evolution of life

A

fossil evidence and DNA sequence data

34
Q

define the term phylogenetics

A

phylogenetics is the study of evolutionary history and relationships

35
Q

name the three domains of life

A

bacteria, archae, eukaryote

36
Q

describe how sequence data is used to study the evolutionary relatedness among many group of organisms

A

sequence data can be used to study the evolutionary relatedness among groups pf organisms. sequence divergence is used to estimate time since lineages diverged (spilt) and along with molecular clock data can be used to construct a phylogenetic tree

37
Q

describe the order of the main sequence of events in the evolution of life, as determined by the use of sequence data and fossil evidence.

A

basic cells - last universal ancestor - prokaryotes - photosynthetic organisms - eukaryotes - multicellular organisms - animals - vertebrates - land plants

38
Q

describe what molecular clocks are used to show and explain how molecular clocks show time of divergence from a common ancestor

A

molecular clocks are used to show when species diverge during evolution. They assume a constant mutation rate and show differences in DNA sequences or amino acid sequences. Therefore any differences in sequence data between species indicate the time of divergence from a common ancestor.

39
Q

explain the importance of an individual’s genome in relation to developing diseases ( personalised medicine)

A

an individual’s personal genome sequence can be used to select the most effective drugs and dosage to treat their disease

40
Q

define the term pharmacognetics

A

the use of an indiviudual’s genome information in the choice of drugs to treat diseases