Workshops Flashcards

1
Q

A chemical reaction for which the associated enthalpy change (delta H) is positive:
A) Cannot occur spontaneously
B) May occur spontaneously if coupled to a reaction in which the enthalpy change is negative and of greater magnitude
C) Raises the temperature of the surroundings
D) Will inevitably occur spontaneously

A

B) May occur spontaneously if coupled to a reaction in which the enthalpy change is negative and of greater

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2
Q

When may a chemical reaction with a positive enthalpy change occur?

A

Spontaneously if coupled to a reaction in which enthalpy change is greater and more negative

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3
Q

A chemical reaction for which the associated free change (delta G) is large and negative:
A) Cannot occur spontaneously
B) Is likely to be irreversible in the cell
C) Will inevitably occur spontaneously
D) Will occur very rapidly

A

B) Is likely to be irreversible in the cell

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4
Q

When is a reaction likely to be irreversible?

A

A chemical reaction for with the free energy change is large and negative

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5
Q

What is a polar molecule?
A) a molecule with no charge
B) a molecule with opposite charges at opposite ends
C) a molecule with identical charges at opposite ends
D) a molecule with an unequal number of protons and electrons

A

B) a molecule with opposite charges at opposite ends

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6
Q

How does water arrange around ions?
A) the more negative atoms attach to positive ions
B) the more positive atoms attach to negative ions
C) water forms a hydration shell
D)All of these are true

A

D) all of these are true

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7
Q

How does water arrange around ions?

A

More negative atoms attach to positive ions. More positive atoms attach to more negative ions. Water forms a hydration shell

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8
Q

Which is true regarding the structure go hydrogen bonds?
A) hydrogen bonds can only arise from the covalent interaction between oxygen and hydrogen atoms
B) It os only the hydrogen atoms of a water molecule which interact with polar molecules
C) hydrogen bonds involve a linear arrangement of one hydrogen atom between 2 electronegative atoms
D) Hydrogen bonds are angled at 104.3 degrees

A

C) hydrogen bonds involve a linear arrangement of one hydrogen atom between 2

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9
Q

Characteristics of hydrogen bonds

A

Linear arrangement
Bond between hydrogen atom and electronegative atom
104.5 degrees bond angle

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10
Q

Which of the following about amino acids is correct?
A) Amino acids are classified according to the structures and properties of their side chains
B) Amino acids are uncharged at neutral pH
C) Amino acids in proteins are mainly in the D- configuration
D) Twenty four amino acids are commonly used in protein synthesis

A

A) Amino acids are classified according to the structures and properties of their side

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11
Q

What happens to amino acids at a neutral pH

A

They reach their iso-electric point
Have an overall charge of 0
Precipitate out of solution

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12
Q

All amino acids contain an alpha carbon bonded to the following structures
A) An amino group (-NH2), a carboxyl group (-COOH), a hydrogen (-H), a side chain (-R)
B) an amide group (-CONH2), a carboxyl group (-COOH), a hydrogen (-H), a side chain (-R)
C) an amino group (-NH2), a carboxyl group -COOH), a hydroxyl group (-OH) , a side chain (-R))
D) an amide group (- CONH2), a hydrogen (-H), a side chain (-R)

A

A) An amino group (-NH2), a carboxyl group (-COOH), a hydrogen (-H), a side chain (-R)

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13
Q

Which of the following statements is true about a peptide bond? (RCONHR’)
A) it is not planar
B) It is capable of forming a hydrogen bond
C) Electron resonance between amino and carbonyl groups creates a partial double bond
D) the cis configuration is favoured over trans configuration

A

C) Electron resonance between amino and carbonyl groups creates a partial double bond

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14
Q

What does negative delta G mean?

A

Reaction is thermodynamically favourable/ feasible

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15
Q

How do you change a negative value of delta G to a positive value of delta G?

A

Have a negative value for InKeq

- this is done by changing concentration of reactants and products so that numerator is smaller than denominator

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16
Q

What does positive enthalpy mean?

A

Heat is being absorbed by the system

17
Q

What is the standard free energy of a life process?

A

Delta G prime

18
Q

What is Keq?

A

Ratio of products over reactants

19
Q

During the formation of the peptide bond, what takes place?

A

The alpha amino group of one amino acid acts as a nucleophile to displace the hydroxyl group of another amino acid forming a peptide bond

20
Q

Compare solution A with pH=4 to solution B with pH= 6
A) concentration of H+ in solution A is twice than that in solution B
B) Solution A has greater buffering capacity than solution B
C) The concentration of H+ in solution A is 100 times than that in solution B
D) The hydroxide concentrations are equal in the two solutions since pH only measures the concentration of H+

A

C) The concentration of H+ in solution A is 100 times than that in solution B

21
Q

What is the log scale for pH 4 and pH 6?

A

0.0001/ 0.000001 = 100

22
Q

How many zeros does pH 1 have

23
Q

Two weak acids, A and B, have pKa values of 4 and 6 respectively. Which statement is true?
A) Acid A dissociates to a greater extent in water than acid B
B) For solutions of equal concentration, acid B will have a lower pH
C) B is the conjugate base of A
D) Acid A contains more ionising groups than acid B
E) The equivalence point of acid A is higher than that of acid B

A

A) Acid A dissociates to a greater extent in water than acid B

24
Q

Explain how pKa acids are smaller with increasing strength

A

Strong acids favour [H+][A-] so ratio to [HA] gives a larger value. Since pKa= lopKa, values become smaller with increasing acid strength.

25
A buffer solution contains ethnic acid and its conjugate base; the pKa of ethnic acid is 4.74. At what pH does the solution buffer?
pH 5.0
26
A strong acid will display a larger Ka but smaller pKa value compared to a weak acid, true or false?
True
27
An amino acid can act as acid or base; true or false?
True
28
Which type of bonding is responsible for secondary structure of proteins?
Hydrogen bonding between C=O and N-H groups of peptide bonds.
29
Which term below best defines the quaternary structure of a protein?
The arrangement of two or more polypeptide subunits into a single functional complex