WEEK 9 (Globular Proteins) Flashcards
What are Hemeproteins?
A group of specialised proteins containing Heme as a tightly bound prosthetic group
What is the role of the heme group based on?
Environ created by 3D structure of protein
Describe the structure
- A complex of PROTOPORPHYRIN IX and Ferrous iron (Fe2+)
- Iron is held in centre of heme molecule by bonds to 4 nitrogen of porphyrin ring
- Heme Fe2+ can form 2 additional bonds, one on each side of the planar porphyrin ring
Give some examples of Heme functioning in proteins
- Heme of a cytochrome functions as an electron carrier
- Heme of catalase is part of the active site of the enzyme
- In Hb and Myoglobin (the two most abundant heme proteins) heme serves to reversibly bind oxygen
Describe the structure and function of Myoglobin
- functions as a reservoir for oxygen and acts as an oxygen carrier than increases rate of transport of oxygen within muscle cell
- consists of a single polypeptide chain structurally similar to individual subunit polypeptide of Hb molecule, making myoglobin useful model for interpreting some complex properties of Hb
- Myoglobin is a compact molecule (around 80% of its polypeptide is folded into 8 stretches of alpha-helix)
- alpha-helical regions are terminated either by Pro (its 5-membered ring cannot be accommodated in alpha-helix) or by B-bends and loops stabilised by H-bonds and ionic bonds
- interior is composed almost entirely of non-polar amino acids (packed together forming a structure stabilised by hydrophobic interactions)
- charged amino acids located almost exclusively on surface, forming H-bonds with each other and with water
What is Myoglobin?
A hemeprotein present in heart and skeletal muscle
What are the key concepts behind the binding of heme group?
- Heme group sits in a crevice lined with non-polar amino acids (except 2 His residues)
- PROXIMAL HIS binds directly to iron of heme & DISTAL HIS does not directly interact with heme but helps stabilise binding of oxygen to ferrous iron
- The protein/globin portion of myoglobin creates a MICROENVIRON (for heme this permits reversible binding of one oxygen molecule)
- Simultaneous loss of electron by ferrous ion (oxidation) occurs only rarely
Where is haemoglobin exclusively found and what is its function?
Hb is found exclusively in Red blood cells & its main function is transport of oxygen from lungs to capillaries of tissues
Describe the structure of haemoglobin
- HbA (major Hb in adults) is composed of 4 polypeptide chains, 2 alpha and 2 beta chains held together by non-covalent interactions
- Each subunit has stretches of alpha-helical structure and a heme binding pocket
- Tetrameric Hb is more complex structurally and functionally than myoglobin
Give examples of how Hb is more complex structurally and functionally than Myoglobin
- Hb can transport CO2 from tissues to the lungs and carry O2 from lungs to cells of the body
- Oxygen-binding properties of Hb are regulated by interaction with ALLOSTERIC EFFECTORS
Describe the quaternary structure of Hb
- Hb tetramer is composed of 2 identical dimers (aB)1 and (aB)2
- The 2 polypeptide chains in each dimer is held tightly together primarily by hydrophobic interactions
- Ionic and hydrogen bonds occur between members of the dimer
- The two dimers are held together primarily by polar bonds. The weaker interactions between the dimers allow them to move with respect to one another; this movement results in the two dimers occupying different relative positions in DEOXYHEMOGLOBIN as compared with OXYHEMOGLOBIN
What are the two forms of Haemoglobin and what are the differences between them?
T-form and R-form
T-FORM:
- deoxy form of Hb “T” or taut (tense) form
- the two alpha-beta dimers interact through a network of ionic and H-bonds which constraints movement of polypeptide chains
- low oxygen-affinity form of Hb
R-FORM:
- “R” or relaxed form
- binding of oxygen to Hb causes rupture of some the ionic and H-bonds between alpha-beta dimers which causes the polypeptide chains to have more freedom of moveemnt
- high oxygen-affinity form of Hb
Describe the binding of oxygen to myoglobin and Hb
- Myoglobin can bind to 1 O2 molecules as it contains only 1 heme group
- Hb can bind to 4 O2 molecules (one at each of its 4 heme groups)
- Degree of saturation (Y) of these oxygen-binding sites on all myoglobin or Hb molecules can vary between 0 (all sites are empty) and 100% (all sites are full)
What is the Oxygen dissociation curve and what does it show?
The Oxygen dissociation curve is a plot of the degree of saturation (Y) measured at different PO2
what it shows:
- myoglobin has a higher oxygen affinity than Hb
- partial pressure of oxygen needed to achieve half-saturation of binding sites (P50) is around 1mm Hg for myoglobin & 26mm Hg for Hb
- the higher the oxygen affinity, the lower the pressure of oxygen needed to achieve half-saturation of binding sites
What bonds occur between aB dimer pairs in the deoxygenated state?
Weak ionic and hydrogen bonds
Describe the bonding between aB dimers in the oxygenated state
Some ionic and hydrogen bonds between aB dimers are broken in the oxygenated state
Describe the bonding that forms stable aB dimers
Strong interactions, primarily hydrophobic, between alpha and beta chains form stable aB dimers
When is the oxygen-dissociation curve steepest?
The oxygen-dissociation curve is steepest at the oxygen concentrations that occur in the tissues. This permits oxygen delivery to respond to small changes in pO2.
What are the key properties of the Myoglobin oxygen-dissociation curve?
- HYPERBOLIC SHAPE which reflects that myoglobin reversibly binds a single molecule of oxygen
- oxygenated (MbO2) and deoxygenated (Mb) exist in a simple equilibrium: Mb + O2 <–> MbO2
- Mb is designed to bind oxygen released by Hb at the low pO2 found in muscles
- Mb releases oxygen within muscle cell in response to oxygen demand
What are the key properties of the haemoglobin oxygen-dissociation curve?
- SIGMOIDAL SHAPE which reflects that subunits cooperate in binding oxygen
- although binding of 1st O2 is difficult, subsequent binding of O2 occurs with high affinity, shown by the STEEP UPWARD CURVE
What is heme-heme interaction?
Cooperative binding of oxygen by the 4 subunits of haemoglobin means binding of oxygen to one heme group increases the oxygen affinity of remaining heme groups in the same haemoglobin molecule
What affects the ability of haemoglobin to reversibly bind to oxygen?
- pO2 (through heme-heme interaction)
- pH of environ
- pCO2 and availability of 2,3-biphosphoglycerate
What is the effect of Allosteric effectors?
Their interaction on one site on haemoglobin molecule affects binding of oxygen to heme groups at other locations on the molecule
Binding of oxygen to myoglobin is not influenced by allosteric effectors of Hb (TRUE/FALSE)
TRUE
Explain the sigmoidal oxygen-binding curve
Sigmoidal shape is due to the heme-heme interactions and reflects specific structural changes that are initiated at one heme and transmitted to other heme groups in Hb tetramer. The net effects is the affinity of Hb for the last oxygen is 300x greater than affinity for the 1st.
What does cooperative binding allow in tissues?
Cooperative binding of oxygen allows Hb to deliver more oxygen to tissues in response to relatively small changes in pO2
e.g
- in lungs, concentration of oxygen is high and Hb becomes saturated with oxygen
- in peripheral tissues, oxygen-haemoglobin releases much if its oxygen for use in oxidative metabolism
Describe the significance of the sigmoidal O2-dissociation curve and how a hyperbolic molecule differs
Steep slope of oxygen-dissociation curve over the range of oxygen concentration between lungs and tissues permits haemoglobin to carry and deliver oxygen efficiently from sites of high to sites of low pO2
A molecule with hyperbolic oxygen-dissociation curve (e.g myoglobin) would have max affinity for oxygen throughout this oxygen pressure therefore would deliver no oxygen to tissues
Describe what the Bohr effect is
The Bohr effect describes hemoglobin’s lower affinity for oxygen secondary to increases in the partial pressure of carbon dioxide and/or decreased blood pH
Explain the Bohr effect and what happens conversely
Release of oxygen from Hb is enhanced when pH is lowered or when Hb is in pressure of an increased pCO2. Both result in decreased oxygen affinity which shifts to the right in O2-dissociation curve
Conversel, raising pH or lowering concentration of CO2 results in a greater affinity for oxygen and a shift to the left in O2-dissociation curve
What does a decrease in pH result in?
decreased oxygen affinity of haemoglobin and therefore a shift to the right in the oxygen dissociation curve
At a lower pH, what is required to achieve any given oxygen saturation?
a greater pO2
What has a higher concentration of both CO2 and H+, capillaries or the lungs?
Capillaries
Concentration of both CO2 and H+ in capillaries of metabolically active tissues is higher than that observed in capillaries of lung, where CO2 is released into expired air