Week 8 Flashcards

1
Q

A defect in which gene causes cystic fibrosis?

A

CFTR (Cystic Fibrosis Transmembrane Regulator)

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2
Q

What is the most common CFTR mutation?

A

ΔF508

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3
Q

What does the CFTR transporter control?

A

Controls chloride transport across epithelial membranes (mucous, sweat, saliva, tears and digestive enzymes)

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4
Q

Which 9 conditions are screened in newborn screening?

A
  • Cystic fibrosis
  • Sickle cell
  • Congenital hypothyroidism
  • Medium-chain acyl-CoA dehydrogenase deficiency (MCADD)
  • Maple syrup urine disease (MSUD)
  • Isovaleric acidaemia (IVA)
  • Glutaric aciduria type I (GAI)
  • Homocystinuria (Pyridoxine unresponsive) (HCU)
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5
Q

What are some symptoms of cystic fibrosis?

A
  • Meconium ileus
  • FTT (failure to thrive)
  • Sinusitis
  • Recurrent LRTIs
  • Greasy/bulky stools
    Prolapse
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6
Q

Other than newborn heel prick test, how would you screen for cystic fibrosis?

A
Sweat test
CF kids are salty
- Pilocarpine and current
- Collect sweat
- Measure chloride content
- Can be confirmed with gene testing
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7
Q

What are some treatments for cystic fibrosis?

A
  • Antibiotics +++ inhaled, oral and IV
  • Pulmonary Rehab – Physio, airway clearance techniques
  • The Vest
  • DNAse
  • Transplant
  • High calorie diet
  • Creon - amylase, lipase and protease
  • ADEK vitamins
  • Kalydeco or kaftrio
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8
Q

What are some external features of Trisomy 21?

A
  • Hypotonia
  • Upward slanting palpebral fissures
  • Brachycephaly - flat occiput
  • Clinodactly with short 5th finger
  • Protruding tongue
  • Flat nasal bridge
  • Epicanthal folds
  • Brushfield spots (spots on iris)
  • Ear abnormalities (low set ears, stenotic meatus)
  • Single palmar crease
  • Loose nuccal skin
  • Short fingers
  • Sandal gap
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9
Q

What are some internal features of Trisomy 21?

A
  • AVSD, VSD, ASD
  • Hirschprung’s disease - lack of nerves in rectum
  • Duodenal atresia, trachea-oesophageal fistula
  • Low IQ (mean 50)
  • ENT issues
  • Hypothyroidism
  • Atlanto-axial instability
  • Cataracts
  • Transient abnormal myelopoiesis –> Acute Myeloid Lymphoma
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10
Q

What genetic abnormality is Edward’s syndrome?

A

Trisomy 18

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11
Q

What are some features of Edward’s syndrome?

A
  • Clenched hand, with overlap of the 2nd and 5th fingers, over the 3rd and 4th
  • Rocker bottom feet
  • Micrognathia, prominent occiput, micro-ophthalmia
  • Low set ears
  • VSD/ASD
  • Generalised muscle spasticity
  • Renal abnormalities
  • Mental retardation
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12
Q

What genetic abnormality is Patau’s syndrome?

A

Trisomy 13

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13
Q

What are some features of Patau’s syndrome?

A
  • Holoprosencephaly
  • Polydactyly
  • Seizures
  • Deafness
  • Microcephaly
  • Midline cleft lip/palate
  • Abnormal ears
  • Sloping forehead
  • Cutis aplasia
  • Omphalocele
  • Cardiac and renal anomalies
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14
Q

What genetic abnormality is Turner’s syndrome?

A

45 X0

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15
Q

What are some features of Turners syndrome?

A
  • Low birth weight and length
  • Short stature
  • Low posterior hairline
  • Webbed neck
  • Puffy hands and feet (due to lymphedema)
  • Shield chest and wide spaced nipples
  • Cubitus valgus - elbows turned inward with forearms deviated outwards
  • high palate
  • low set ears
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16
Q

What is the genetic abnormality in Klinefelter’s syndrome?

17
Q

What are some features of Klinefelter’s syndrome?

A
  • 1 in 600 male births
  • Usually presents in adolescence
  • Muscle weakness
  • Increased height
  • Poor coordination
  • Reduced body hair
  • Gynaecomastia
  • Reduced libido
  • Primary hypogonadism
  • Low testosterone
  • High FSH
  • Microorchidism
  • Infertility
18
Q

What is the genetic abnormality in Williams syndrome?

A

7Q11.23 deletion

19
Q

What are some features in Williams syndrome?

A
  • 1/1000 births
  • Elastin region
  • IQ differences
  • Characteristic “elfin” facies:
  • Short nose, broad nasal tip
  • Small widely spaced teeth
  • Small chin
  • Wide mouth
  • Puffy eyes
  • Full cheeks
  • Full lips
  • Can appear more gaunt as adult
  • Supravalvular aortic stenosis
  • Hypercalcaemia
  • Diabetes
  • Hypothyroidism
  • Visuo-spatial and numerical difficulties
  • Spoken language and music abilities
  • Cocktail party chatter/personality
  • overfriendliness
  • lack of fear with stranger
  • strong pro-social compulsion
  • excessive talkativeness
  • verbal fluency with extensive and expressive speech rich in vocabulary
20
Q

What is the genetic abnormality in Prader-Willi syndrome?

A

Deletion of paternal 15Q11-Q13

21
Q

What are some features of Prader-Willi syndrome?

A
  • Characteristic facies
  • Distinctive evolution of condition
  • Impaired hypothalamic function

Early features:

  • Hypotonia
  • Failure to thrive
  • Poorly developed genitals
  • Developmental delay (walking 24m, enhanced VP skills)
  • Hyperphagia
  • Tantrums –> psychosis

Later features:

  • Central obesity
  • IHD
  • Type 2 DM
  • OSA
  • Short stature
  • Hypogonadism: incomplete, delayed or abnormal pubertal development. Men are thought to be infertile
  • Intellectual disability
22
Q

What is the threshold model?

A
  • Some polygenic diseases do not show a normal distribution but instead are either present or absent (mimicking a single gene disorder)
  • These traits show a liability distribution:
  • Those with few disease associated alleles or limited exposure to environmental factors have a limited chance of developing the disease
  • Those with more disease associated alleles or more exposure to environmental factors have an increased chance of developing the disease
23
Q

What is epistasis?

A
  • ‘Gene-gene interactions’

- Combined variant effects qualitatively or quantitatively different from single effects

24
Q

What is pleiotropy?

A
  • Single gene/variant causative of different traits
  • Affected traits not always obviously related
  • Antagonistics pleiotropy
25
What happens in a polymerase chain reaction?
- Denaturation of DNA - Annealing of primers - Extension of primers
26
What can quantitative assay be used for?
- Detect and quantify viral, bacterial and fungal pathogens - Quantify expression of oncogenes - Analyse gene splicing variants
27
What is reverse transcription?
- Identified in many organisms, including viruses, bacteria, animals and plants - Converts RNA sequences to cDNA sequences that are capable of inserting into different areas of the genome - Eg. propagation of retroviruses eg. HIV, SARS-Cov-2
28
What is hybridisation?
- The process of combining two complementary single-stranded DNA or RNA molecules and allowing them to form a single double-stranded molecule through base pairing - Part of many important laboratory techniques such as polymerase chain reaction and Southern blotting
29
What is blotting?
Blotting is the process by which DNA, RNA or proteins are transferred onto a membrane in order to be visualised
30
What are the different types of blotting and what do they detect?
Southern blot - DNA Northern blot - RNA Western blot - protein