Week 7 Flashcards
What are the two categories of bacterial GI infection?
infection and intoxication
Describe infection
bacterial pathogens develop in the gut after ingestion of contaminated food
e.g salmonella, campylobacter, pathogenic E.coli
incubation time at least 8-12 hours before symptoms develop
Describe contamination
bacterial pathogens grow in foods and produce toxins
examples - bacillus cereus, staph.aureas
relative short incubation time because of preformed toxin in food
What is diarrhoea?
abnormal frequency and/or watery stool usually indicates small bowel disease causes fluid and electrolyte loss severity varies widely from mild self-limiting to severe/fatal virulence of organism degree of compromise of the host
Describe gastroenteritis
nausea, vomiting, diarrhoea and abdominal discomfort
Describe dysentery
inflammatory disorder of the large bowel
blood and pus in faeces
pain, fever and abdominal cramps
Describe enterocolitis
inflammatory process affecting small and large bowel
What are the manifestations of GI infection within the GIT?
toxin effects (cholera) inflammation due to microbial invasion (shigellosis)
Describe the manifestations of GI infection out with the GIT
systemic effect of toxins (STEC)
invasive infection of GIT with wider dissemination (metastatic salmonella infection)
What is the barrier in the mouth to GI infection?
lysozyme
What is the barrier in the stomach to GI infection?
acid pH
What are the barriers in the small intestine to GI infection?
mucous bile secretory IgA lymphoid tissue (Peyer's patches) epithelial turnover normal flora
what are the barriers to GI infection in the large intestine?
epithelial turnover
normal flora
What are the main sources of GI infection?
zoonotic - symptomatic animals and asymptomatic shredders
human carriers (typhoid)
environmental sources
What is meant by the faecal-oral route?
any means by which infectious organisms from human / animal faeces can gain access to GIT of another susceptible host
What are the three Fs?
food
fluid
fingers
When is person to person transmission more likely?
small infectious dose
ability to contaminate and persist in the environment
What is important in the history of GI infection?
vomiting, abdominal pain, diarrhoea, frequency and nature of symptoms, travel history, food history, other affected individuals, speed of onset of illness, blood in stols
What should be examined for GI infection?
abdominal exam
temperature
features of dehydration
What are the laboratory diagnosis techniques for bacterial GI infection?
enrichment broth
selective media
differential media
Which species of bacteria are non-lactose fermenters?
salmonella and shigella
Why are antibiotics not generally used to treat GI infections?
may prolong symptoms duration
may exacerbate symptoms
promotes emergence of antibiotic resistance
may actually be harmful (STEC infection)
How can GI infections be controlled?
adequate public health measures
education in hygienic food preparation
pasteurisation of milk and dairy products
sensible travel food practises
What is the microbiology of campylobacter?
curved gram negative bacilli
microaerophilic and thermophilic
culture of campylobacter selective agar
C.jejuni most important species
What is the epidemiology of campylobacter?
commonest bacterial food borne infection in UK large animal recevoir transmitted via contaminated food peaks in May and september person to person spread rare large point outbreaks uncommon
Describe the pathogenesis of campylobacter
inflammation, ulceration and bleeding in small and large bowel due to bacterial invasion
bacteraemia can occur
rarely causes post-infectious demyelination syndrome (guillain-barre) ascending paralysis
What are the clinical features of campylobacter infection?
incubation 2-5 days bloody diarrhoea cramping abdominal pain vomiting not common fever 2-10 day duration
What is the treatment of campylobacter infection?
fluid replacement
clarithromycin for severe/persistent disease
quinolone or amino glycoside for invasive disease
What are the specific control points for campylobacter infection?
reduction of contamination in raw, retail poultry meat
adequate cooking
What is the microbiology go salmonella?
gram negative bacilli member of enterobacteriacaeae most human infection caused by salmonella enteric non-lactose fermenters XLD plates used in labs
Describe the epidemiology of salmonella infection
found in animals
acquired via contaminated food - especially pork, poultry and other meat and dairy products
large foodbrone outbreaks can occur (can multiply on food)
secondary spread from person to person can occur
seasonal peals in summer and autumn
What is the pathogenesis of salmonella infection?
diarrhoea due to invasion of epithelial cells in distal small intestine and subsequent inflammation
bacteraemia can occur
distant organs may become seeded to establish metastatic foci _osteomyelitis, septic arthritis , meningitis
What are the clinical features of salmonella infection?
incubation 12-72 hours watery diarrhoea vomiting is common fever can occur with more invasive disease duration 2-7 days
What is the treatment of salmonella infection?
fluid replacement
beta lactams, quinolone or ahminoglycosides for severe infections
What are the specific control points for salmonella infection?
the introduction of immunisation of poultry flocks lead to a dramatic reduction in S.enteridid in the UK
Describe the microbiology of shigella infection
gram negative bacilli member of enterobacteriaceae 4 species - sonnei, body and flexneri, dysenteriae non-lactose fermenters XLD plates used
Describe the epidemiology of shigella infection
mainly associated with diarrhoea disease in children
S.dysenteriae in developing world
humans only resevoir
large outbreaks can occur
does not persist in environment
person to person spread via person to person route
recent outbreaks associated with MSM
Describe the pathogenies of shigella infection
organisms attach to and colonise mucosal epithelium of terminal ileum and colon
no systemic invasion
S.dysenteriae produces an exotoxin (shiga toxin) which not only damages intestinal epithelium but can lead to HUS
What are the clinical features of shigella infection?
dysentery incubation 1-3 days duration 2-7 days initially watery diarrhoea followed by bloody diarrhoea marked cramping abdominal pain vomiting is uncommon fever is usually present
what is the treatment of shigella infection?
usually self-limting
fluid replacement
some will need treatment for renal failure
What are the specific control points for shigella infection?
only found in humans, good standards of sanitation and personal hygiene are key measures
Describe the microbiology of vibrio cholerae
comma shaped gram negative bacilli
serotype O1, _classical and El Tor and serotype O130
sucrose fermenter. Thiosulphate bile sucrose selective / differential medium
What is the epidemiology of vibrio cholerae?
cause of epidemic and pandemic cholera
endemic in parts of SE asia, africa and south america
only infects humans, asymptomatic human resevoir
can only live in fresh water
spreads via contaminated food or water
direct person to person is uncommon
What is the pathogenesis of vibrio cholera infection?
flagella and mucinase facilitate penetration of intestinal mucosa
attachment by specific receptors
diarrhoea due to production of potent protein exotoxin
What are the clinical features of vibrio choleae infection?
severe, profuse, watery diarrhoea
profound fluid loss and dehydration pecipitates hypokalaemia, metabolic acidosis, hypovolaemic shock, metabolic acidosis and cardiac failure
What is the treatment of cholera?
prompt oral or IV rehydration is life saving
tetracycline antibiotics may shorten duration of shredding
What are the specific control points for cholera?
no animal reservoir
clean drinking water supply and proper sanitation are key preventative measures
What are the 6 diarrhoeagenic groups of e.coli?
enteropathogenic (EPEC) enterotoxigenic (ETEC) enterohaemorrhagic (EHEC) enteroinvasive (EIEC) enters-aggregative (EAEC) diffuse aggregative (DAEC)
Describe the microbiology of EPEC
no differential media available
test selection of colonies using polyvalent antisera for common EPEC serum types
not routinely done
Descrive the epidemiology of EPEC
sporadic cases and some outbreaks or diarrhoea in infants and children
cause of some cases of traveller’s diarrhoea
Describe the pathogenesis of EPEC
initial adherence via pilli followed by formation of characteristic attaching and effacing lesion mediated bt intimin protein and Tir (translocated intimin receptor) and disruption of intestinal microvilli
Describe the clinical features of EPEC
incubation 1-2 days
duration 1-several weeks
watery diarrhoea with abdominal pain and vomiting
often accompanied by fever
Describe the microbiology of ETEC
no differential media available
test liquid cultures for production of toxins by immunoassays
not routinely done
describe the epidemiology of ETEC
major bacterial cause of diarrhoea in infants and children in developing world
major cause of travellers diarrhoea
Describe the pathogenesis of EHEC
diarrhoea due to action of 1 or 2 plasmid encoded toxins
heat labile (function analogue of cholera toxin)
heat stabile
Describe the clinical feats of ETEC
incubation 1-7 days
duration 2-6 days
watery diarrhoea, abdominal pain and vomiting
no associated fever
Describe the microbiology for EHEC
more than 100 serotypes
best known O157:H7
non-sorbitol fementer. Sorbitol MacConkey agar (SMAC)
Describe the epidemiology of EHEC
outbreaks and sporadic
large animal resevoirs
persistent in environment
consumption of contaminated food, water and dairy products and direct environment l contact with animal faeces
secondary person to person spread important (low infectious dose)
Describe the pathogenesis of EHEC
attaching and effacing lesion
production of shiga like toxins. structural and functional analogue of shigella dystenteriae toxin (STEC)
What are the clinical features of EHEC?
incubation 1-7 days duration 5-10 days bloody diarrhoea with abdominal pain and vomiting no associated fever haemolytic uraemic syndrome
Describe HUS
microangionpathic haemolytic anaemia
thrombocytopenia
acute renal failure
Describe the microbiology for staph. aureas
gram positive cocci
grow well in routine media
testing for enterotoxins not routinely performed
Describe the epidemiology and pathogenesis of staph.aureas
50% produce enterotoxins
heat stable and acid-resistant toxins
food is contaminated by human carriers
esepcilly cooked meats, cakes and pastries
bacteria multiply at room temperature and produce toxins
What are the clinical features of staph.aureas GIT infection?
incubation 30 minutes to 6 hours
duration 12-24 hours
profuse vomiting and abdominal cramps
no fever and no diarrhoea
What is the control of GIT staph.aureas infection?
hygienic food preparation to minimise contamination
refrigerated storage
describe the microbiology of bacillus cereus
aerobic, spore forming gram positive bacilli
not routinely tested for
Describe the epidemiology and pathogenesis of bacillus cereus infection
spores and vegetative cells contaminate wide range of foodstuffs
2 types of disease - emetic and diarrhoeal
Describe emetic bacillus cereus
typically associated with fried rice
spores survice initial boiling
if rice is bulk cooled and stored prior to frying, the spores germinate, multiply and re-sporulate
protein enterotxoni produced during sporulation
heat stable toxin survives further frying
Describe diarrhoea bacillus cereus
spores in food service cooking, germinate and organisms multiply in food
ingensted organisms produce and heat labile toxin in the gut with similar mode of action to cholera toxin
Describe the clinical features of emetic bacillus cereus
incubation 30 minutes to 6 hours
duration 12-24 hours
profuse vomiting with abdominal cramps and watery diarrhoea
Describe the clinical features of diarrhoeal bacillus cereus
incubation 8-12 ours
duration 12-24 hours
watery diarrhoea with cramping abdominal pain, but no vomiting
no fever
Describe the microbiology of clostridium perfringes
anaerobic, spore forming gram postive bacilli
not routinely tested for
Describe the epidemiology and pathogenies of clostridium perfringes
spores and vegetative cells ubiquitive in soil and animal gut
contaminated food stuff
often involves but-cooking of stews, meat pies
spores survice cooking, germinate and organisms multiply in cooling food
food inadequately reheated to kill organism
organisms ingested and sporulate in large intestine with production of enterotoxin
Describe the clinical features of clostridium perfringens
incubation 6-12 hours
duration 12-24 hours
watery diarrhoea and abdominal cramps
no fever or vomiting
Describe the control of clostridium perfringens
rapid chilling/freezing of bulk-cooked foods
thorough re-haeting before consumption
Describe the microbiology of clostridium botulinum
anaerobic, spore forming gram postive bacilli
lab diagnosis bases upon toxin detection
Describe the epidemiology and pathogenesis of clostridium botulinum
very uncommon in UK
spores and vegetative cells ubiquitive in soil and animal GIT
produces powerful heat labile protein neurotoxin
foodborn botulism - pre-formed toxin in good. commonly associated with canned foods
infant botulism - organisms germinate in gut of babies fed honey containing spores and toxins are produced in gut
wound botulism - organisms implanted in wound produce toxin
absorbed toxins spread via blood an enter peripheral nerves were to cause neuromuscular blockade at synapses
Describe the clinical features of clostridium botulinum
neuromuscular blockade results in flaccid paralysis and progressive muscle weakness
involvement of muscles of chest/ diaphragm cause respiratory failure
high mortality if untreated
What is the treatment of botulism/
urgent intensive supportive care due to difficulties breathing and swallowing
antitoxin
What is the control for botulism?
proper manufacturing controls in canning industry
hygienic food preparation
proper cooking
refrigerated storage
describe the microbiology of C.dif
anaerobic, spore forming gram postive bacili
spores resistant to heat, drying, disinfection, alcohol
clinical featrures due to production of potent toxin
lab diagnosis based on two step algorithm
Describe the epidemiology and pathogenesis or c.dif
spores and vegetative cells ubiquitous in environment
carriage 3-5 % adults in community
30% of hospitalised patients
asymptomatic carriage rates may be very high in infants
infection requires the disruption of normal gut flora
predominantly affects the elderly
major cause of healthcare associated infections
What are the clinical features of C.dif infection?
mild to severe with abdominal pain
severe cases may develop pseudomembranous colitis
fulminant cases may progress to colonic dilatation and perforation
severe cases may be fatal
relapses are common and may be mutiple
What is the treatment of C.dif?
stop precipitating antibiotics
oral metronidazole or oral vancomycin is severe or not improving
refractory recurrent disease may require faecal transplant
Describe how C.dif can be controlled?
antimicrobial stewardship
infection and prevention control measures
cleaning/disinfection with hypochlorite disinfectants
Describe the microbiology listeria monocytogenes
gram postive coccobacilli
selective culture media available for culture from suspect foods
standard lab for blood and CSF samples
Describe the epidemiology and pathogenesis of listeria monocytogenes
widespread among animals and the environment
pregnant women, elderly and immunocompromised
contaminated foods - unpasteurised milk and soft cheese, pate, cooked meats, smoked fish and coleslaw
ready to eat food and produce
can multiply at 4 degrees
invasive infection from GIT results in systemic spread via bloodstream
Describe the clinical features of listeria
median incubation period 3 weeks
duration of illness 1-2 weeks
initial flu-like illness with or without diarrhoea
majority of cases present its severe systemic infection - septicaemia, mengingitis
What is the treatment of listeria?
IV antibiotics (ampicillin and synergistic gentamicin )
What is the control of listeria?
susceptible groups should avoid high risk foods
observe use by dates
wash raw fruit and vegetables and avoid cross contamination
Describe the microbiology of H.pylori
gram negative spiral shaped bacilli
microaerophilic. urease postive
diagnosis by detection of faecal antigen or urea breath test. serum antibody tests
Describe the epidemiology and pathogenesis of H.pylori
one of the most coon bacterial infections in the world
faecal oral or oral-oral
humans the only reservoir
infection acquired in childhood and persists life long unless treated
pathogenesis is complex involving cytotoxin production, and a range of factors to promote adhesion and coloniation
What are the clinical features of H.pylor?
infection is asymptomatic unless ulcer develops
gastric cancer risk
What is the treatment of H.pylori?
combined treatment with a PPI and combinations of antibiotics such as clarithromycin and metronidazole eradicates carriage and facilitates ulcer healing
Who are at higher risk of viral gastroenteritis?
children under 5
old age people especially in nursing home
immunocomprimised
What are the important viruses that cause gastroenteritis?
norovirus sappovirus rotavirus adenovirus 40&41 astrovirus
What are the calciviridae viruses?
norovirus and sappovirus
Who is affected by norovirus?
all ages but often most serious in young and elderly
Who is affected by rotavirus/adenovirus/astrovirus?
mainly children under 2, elderly, immunocomprimised
What are the structural features of norovirus?
non enveloped, single stranded RNA virus
six gene groups, only 3 affect humans
genogroups divided into atleast 32 geneotypes
most common in UK if the GIi-4 strain
What is the transmission of norovirus?
person to person (faecal-oral, aerosolised)
food -borne
water
infectious dose very small
all ages
very stable and remain viable in the environment
24-48 hour incubation period
can shed for up to 3 weeks after infection
what are the clinical features of norovirus?
may be asymptomatic vomiting diarrhoea nausea abdominal cramps headache fever dehydration in young and elderly usually lasts 12-60 hours
What are the complications of norovirus
significant proportion of childhood hospitalisation
illness in hospital last longer
post infection complications in elderly
chronic diarrhoea and virus shredding in transplant patients
What is the treatment of norovirus?
symptomatic therapy oral and IV fluids antispasmodics analgesics antipyretics
Describe the immunity to norovirus
immunity lasts only 6-14 weeks
can’t be cultured- no vaccine
Describe infection control in norovirus
isolation or cohorting exclude symptomatc staff until well for 48 hours do not move patients do no admit new patients thorough cleaning of wards
Describe roatvirus
reoviridae
double stranded, non enveloped RNA virus
5 stains G1-4 , G9
11 strands of RNA so potential for much antigenic variation
stable in environment and fairly resistant to hand washing
Describe transmission of rotavirus
low infectious dose
mainly person to person via faecal oral or fomites
food and water spread is possible spread via respiratory droplets is speculated
Describe the clinical featrures of rotavirus
incubation 1-3days
clinical manifestations depend of 1st infection or reinfection
watery diarrhoea
abdominal pain
vomiting
loss of electrolytes
lasts 3-7 days
1st infection after age of 3 months is most severe
hospital outbreaks in paediatric wards common
What are the complications of rotavirus?
severe chronic diarrhoea dehydration electrolyte imbalance metabolic acidosis immunodeficiency children may have more severe or persistent disease
Describe the immunity to rotavirus
antibodies and VP8 and VP4
IgA
1 st infection usually severe
doesn’t lead to permanent immunity - subsequent infections less severe
re-infection can occur at any age
young children may suffer up to 5 reinfections by age 2
Describe adenovirus
double stranded DNA virus
40 &41 cause gastroenteritis
fever and watery diarrhoea
supportive treatment
Describe astrovirus
single stranded, non enveloped RNA virus
astrovridae family
cause less severe infection than other enteric pathogens
mainly sporadic but can be outbreaks in young childern
How are gastroenteritis viruses diagnosed?
PCR
testing done in virology lab
vomit or stool samples
What is the common stain used to detect TB?
Ziehl Neelson
What can lead to the reactivation of TB?
immunosuppression, HIV infectionm smoking
What is a Goon complex?
a TB nodule found in the lung and a regional lymph node - central mediastinum and cervical chain
What is seen on chest X ray in primary TB?
consolidation
lymphadenopathy -
What are the two directions that primary TB infection can take?
90% healing, calcificaition, dormant organisms
which can lead to reactivation or reinfection later
or 10% lead to progressive primary tuberculosis
greater susceptibility in certain racial groups, children and immunocompromised
Describe the appearance on chest X-ray of secondary TB
attack and destruction of apices of lung
dramatic on CT scan
forms cavities
apex has highest PO2 - greatest oxygenation - attractive the the mycobacteriumTB
What does a lung infected with TB appear grossly?
caseous necrosis
breakdown of tissue
gas exchange impaired
What is milliary TB?
very widely disseminated
more common in children and immunosuppressed
also in CNS and other areas of the body
classically primary
Describe CNS TB
not too uncommon
can get TB meningitis if it is in the CSF - indolent course over weeks - clouding of conciousness
Describe renal TB
ascends from bladder
can invade reproduction tracts as well
Where else can TB infect?
bone and joint
axial skeleton -
back pain - spread from IV disc to invade adjacent vertebrae
can encroach spinal cord - infarction leading to paraplegia
psoas muscles through sheath - leading to psoas abscess