Week 6 Flashcards

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1
Q

What is coevolution?

A

The evolution of one species is affected by its interaction with another species and vice versa

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2
Q

What is antagonistic coevolution?

A

When the interactions are harmful to one of the two interacting species, such as interactions between predators and prey

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3
Q

What was the original case fatality rate (CFR) in rabbits from the myxoma virus?

A

99.8% then declined

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4
Q

What is an overview of the myxoma virus?

A

Myxoma virus is transmitted by biting arthropods
Original strain had case fatality rate (CFR) of almost 100%
Rapidly replaced by strains with 70-95% CFR
Some strains with less then 50% CFR
Selection favoured this because highly virulent strains had shorter infections periods then attenuated (weaker) strains

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5
Q

When was rabbits and the myxoma virus introduced to Australia?

A

Rabbits introduced in 1859 and bred rapidly and outcompeted native species
Myxoma virus was introduced in 1950 as it was deadly to European rabbits the ancestors to Australian rabbits but not American rabbits where it is natively from

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6
Q

Why do viruses become less virulent?

A

Virus strains that didn’t immediately kill their hosts got to live in their hosts longer and therefore got more opportunity to disperse to new hosts (mosquitos only bite living hosts)

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7
Q

What happened to the rabbit host in response to the myxoma virus?

A

Selection towards genetic resistance in the host
Tested by comparing the same viral strain at Lake Urana in a wild rabbit population 7 years apart
At the start of the trial the strain killed 90% of infected hosts
Seven years later only 26% of hosts were killed

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8
Q

What happened after the host evolved resistance and myxoma virus to become less virulent?

A

Viral lethality began to climb again but with high regional variation and frequent changes across the Myxoma phylogeny
Strains with <50% fatality became very rare
So now more virulent strains had longer infectious periods because they were less readily controlled by the host immune system
Highly virulent immunosuppressive strains began to appear

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9
Q

What were the different strains of myxoma virus and their virulence factors?

A

SLS = virulence grade of 1 (highest score) killed rabbits in about 2 weeks
BRK 4/93 = virulence grade of 1 (highest score) killed rabbits in about 12 days
SWH 805 = virulence grade of 2 70% killed rabbits in about 28 days
OB3 Y317 = virulence grade of 5 killed rabbits all rabbits recovered from strain

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10
Q

What happens to the rabbits with virulent later strains myxoma infection?

A

Lymph node lacking lymphocytes which should be highly prevalent
Also disection of lung was shown to have a secondary bacterial infection due to immune system being severly reduced from myxoma infection

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11
Q

What was the origin of each of the virual strains?

A

SLS = 1950 progenitor virus
BRK 4/93 = 1993 strain
SHW 805 = another 1993 strain
OB£ Y317 = 1994 strain

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12
Q

What is brood parasitism?

A

Bird species lay eggs in the nest of others for example Cowbird and Cuckoo

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13
Q

What traits may evolve from brood parasitism?

A

Host - recognition of parasite eggs
Brood parasitism - increased trickery/mimicry

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14
Q

What is an overview of cuckoo brood parasitism?

A

Cuckoos save energy required to build and maintain nests and raise chicks
So more energy can be put into producing eggs –> female cuckoo can lay up to 25 eggs in a season
Cuckoos can also migrate to wintering grounds earlier

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15
Q

What are the costs of brood parasitism to the host?

A

The chicks take the majority of food
The cuckoo chick may eject the hosts eggs

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16
Q

What species in britain do common cuckoos (Cuculus canorus) are primarily parasitic upon?

A

Meadow pipit (Anthus pratensis) in moorland
Reed warbler (Acrocephalus scirpaceus) in marshland
Dunnock (Prunella modularis) in woodland
Pied wagtail (Motacilla alba) in open country
10 other species are used occasionally

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17
Q

What species in britain do common cuckoos (Cuculus canorus) are primarily parasitic upon?

A

Meadow pipit (Anthus pratensis) in moorland
Reed warbler (Acrocephalus scirpaceus) in marshland
Dunnock (Prunella modularis) in woodland
Pied wagtail (Motacilla alba) in open country
10 other species are used occasionally

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18
Q

What is an overview of host specificity of common cuckoos (Cuculus canorus)?

A

Cuckoos lay mimetic eggs - match eggs to the host nest
Genetically determined
Dunnocks eggs don’t match
This is because dunnocks don’t eject parasitic eggs
Female cuckoos are thought to specialise in one particular host species
Cross mating in males maintains a single cuckoo species though

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19
Q

What did experimental evidence in warblers suggest about rejection?

A

Egg rejection was higher for more dissimilar looking eggs
Egg rejection was higher for larger eggs

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20
Q

What is a strategy that is used by cuckoos?

A

Cuckoos remove one egg when they lay
After the chick hatches it removes the rest of the eggs

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21
Q

Why are the rest of the eggs removed after the chick hatches?

A

Warblers desert single egg nests
The hatched cuckoo chick does what the mother couldn’t do
Maximises resources going to the cuckoo

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22
Q

Why doesnt Dunnock reject eggs?

A

Are dunnocks recent victims?
Is this why they lag behind in their counter adaptations to a new selective pressure
Is there a hidden cost to egg recognition? When cuckoos are rare host species that normally reject eggs reject less often

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23
Q

How did egg reject change between hosts?

A

Experimental tests between suitable and unsuitable hosts showed rejection of eggs was higher in suitable hosts and absent in unsuitable hosts

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24
Q

How can potentially cuckoos avoid egg rejection?

A

Maybe cuckoos switch hosts through evolutionary time when current host search patterns are too strong

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25
Q

What is the egg discrimination like in bird popualions without brood parasites?

A

In Iceland there are no cuckoos so pipits and wagtails have poor egg discrimination potentially as a result of not having brood parasites

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26
Q

What was the thought experiment by Van Valen in 1973 about?

A

Imagine that there is no co-evolution with other species
Evolution and adaptation only responded to the physical environmental pressures
If the environment remains constant you would expect species to adapt and evolve until they fitted their niche perfectly
They have all the adaptations needed to persist
If a new species arises via speciation maybe its not so well adapted to its environment and may become extinct
If this is true then the longer your species has existed for then the less likely it is that it will become extinct
There should be some genera in the fossil record that have lasted a very long time (hundreds of millions of years)

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27
Q

What would happen if Van Valens hypothesis is true?

A

If Van Valens hypothesis were true you would expect to see that some genera have adaptations that are so good that they persist indefinitely

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28
Q

What is the pattern for number of genera and survival time?

A

Lots of genera have survives a small amount of time a few general have survived a long time

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29
Q

What would happen if the probability of extinction if species around for a long time and recently evolved species was the same?

A

If you have a selection of genera, some of which have been around for a long time and some of which have recently evolved, and if there is no difference in their probability of extinction you get a linear distribution

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30
Q

What would happen if genera that had been around for a long time have a lower chance of extinction?

A

However you may expect genera that have been about longer to have a lower probability of extinction
If this was the case we would see a curved line

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31
Q

How was Van Valen proved the relationship between time spent existing and extinction chance?

A

He studied sea Urchins, sand pennies, ammonites and sponges
There was a declining linear relationship with a most species persisting a short amount of time and few species existing a long amount of time

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32
Q

What must be happening to cause equal chance of extinction in organisms based on time length?

A

So what must be happening is that the environment is changing
So new adaptations are required - you can never be perfectly adapted to your environment

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33
Q

What is the quote that inspired the red queen hypothesis?

A

“Here, you see, it takes all the running you can do, to keep in the same place”
Lewis Carrol

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34
Q

What is an overview of the biology of the alice and wonderland quote?

A

Running = evolving to a constantly changing environment
Most obvious change to your environment is other species for e.g. parasites and predators
Parasites and predators evolve to overcome host adaptations so everything is constantly evolving but they don’t become more fit

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35
Q

What is a brief overview of the red queen hypothesis?

A

Predator and prey in fluctuating population ie high predators = low prey = low predators = high prey = high predators constantly in a cycle
If the prey escapes the predator the population will increase until another predator replaces the old and the cycle restarts

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36
Q

What is a brief overview of the court jester hypothesis?

A

Predator and prey in fluctuating population ie high predators = low prey = low predators = high prey = high predators constantly in a cycle
Abiotic event happens which causes the predator population to rapidly to decline
Prey species escapes and increases in size
New predator species evolves which is a descendant to previous predator species

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37
Q

What is an overview of molluscs and their predators?

A

Molluscs are abundant as fossils and show a range of protective adaptations eg Thicker shells, Burrowing species. Cemented species and/or Shell repairs
So we can infer some behaviours from the shells thickness
Thick shells are more costly to make but better protection to predators
Geerat Vermeij looked at the change in prey properties through time and the types of predator present
Repeated constant evolution of new traits

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38
Q

What happened over time with the arms race between molluscivore and molluscs?

A

Molluscivores evolved more complex ways to eat molluscs eg from whole body ingestors to specialised shell breakers and shell drillers
Molluscs evolved a more increasing prevalence of protective mechanisms

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39
Q

What is an example of coadaptation for protection in exchange for food?

A

Ants tend caterpillars of Lycinid butterflies
The caterpillar has glands that feeds the ants sugar water and amino acids
These are available because Lycinid caterpillars tend to eat leguminous plants so have high nitrogen in leaves, so its less costly to feed the ants
If you remove the ants, other insects will lay eggs inside the caterpillar e.g. Tachinid fly
Its costly to the caterpillar to give up sugars but its better than death

40
Q

What are the 2 possibilities for the ants evolving the traits to tend and protect the caterpillar?

A

1 - Ant and caterpillar randomly meet and adapt, a drop of sugar water is released and the and coevolves a response in the ant to tend it
2 - Ant and caterpillar each evolve some traits – maybe the ant evolve tending behaviour because other insects like aphids also release sugar water – independent evolution of the behaviour which is applied to the relationship which then fit together

41
Q

How do we know if there has been coevolution?

A

Phylogenetics

42
Q

How does phylogenetics prove why their are so many beetles?

A

Some beetles still eat connifers but some moved onto angiosperms and there are many more of these species.
If a lineage speciates a lot that is used as a proxy of ecologically success
Many individuals who feed on angiosperms dispersing so diversification and speciating
So why are there so many species of beetle? Probably because there are so many species of plant

43
Q

What did ants evolve from?

A

Ants evolved from wasps and have been very successful

44
Q

What can answer why are ants so successful?

A

To help answer this a project was started to build a phylogeny for the ants
One species of every genus was collected – some genes were sequenced – and a phylogeny was built

45
Q

What can show in a phylogeny ecological sucess?

A

Length of the branches gives an indication of time
Splits can be dated so we can see when most of the diversification happened
Speciation is thought to be a proxy for ecological success – so splits are thought to relate to ecological success

46
Q

Why are there so many species of ant?

A

In the Cretaceous – flowering plants started to diversify
Two possible explanations
1 - Ants feed on plant resources
2 - Parasites of plants are potential prey for ants

47
Q

Why do humans have no hair?

A

Potential loss of function mutation
Or selection against fur –> no hair mean fewer parasites

48
Q

What are the 4 different social interaction behaviours?

A

Mutalism
Predation/parasitism
Altruism
Competition

49
Q

What are social behaviours?

A

Exchanges take place between an actor and recipient and can have positive and negative effects on both.

50
Q

What is an overview on predator/parasitism?

A

In predator/parasitic relationships the actor gains fitness and the recipient looses fitness from the actors behaviour

51
Q

What is an overview on mutualism?

A

The actor gains fitness and the recipient gains fitness from the actors behaviour

52
Q

What is altruism?

A

This is a behaviour that increases another individuals fitness at a cost to ones own fitness
On its own altruism should not evolve because altruistic individuals appear to have lower fitness

53
Q

What are examples of altruism?

A

Alarm calls -> meerkats
Nest helpers -> Scrub jays
Social insects

54
Q

How was altruism evolved?

A

Kin selection – natural selection can favour altruistic behaivour between kin e.g. Florida scrub jay
Reciprocity – can be direct or indirect – “you scratch my back, I’ll scratch yours” eg allogrooming - baboons scratch each others backs. This requires memory and individual recognition help those who help me

55
Q

What is mutualism?

A

Two different species both incur cost to benefit the other
Often with animal/plant on one side and a microorganism on the other (bacteria, virus, fung

56
Q

What is an example of mutualism in squid?

A

Bobtail squid
Squid provides food and housing (at a cost) to Vibrio fischeri bacteria
Bacteria glow (at a cost)
The glow lest the squid counter-illuminate the moon shadow, to avoid predation

57
Q

What is an example of mutualism in jellyfish?

A

Upside down jellyfish
Jellyfish provides housing to algae
Algae give up some of their photosynthetic product to the jellyfish

58
Q

What is an evolutionary problem created by mutualism and altruism?

A

Cheating
Imagine you have two kinds of individual on one side of a mutualism (helpers and cheaters)
The helper will have a lower fitness to the cheater
Kin selection and reciprocity cannot solve this problem

59
Q

What is an example of cheating organisms having a higher fitness compared to mutualistic ones?

A

When Vibrio fischeri bacteria are grown in culture, non-glowing individuals arise by mutation and have a higher growth rate (fitness).
The non-glowers are probably also arising inside the squid and should thus take over the colony, resulting in non-glowing squid

60
Q

What is the phrase about mutualism by D.H Janzen?

A

Mutualisms are the most omnipresent of any organism to organism interaction

61
Q

What are the 3 main types of mutualism?

A

Trophic mutualism
Defensive mutualism
Dispersal mutualism

62
Q

What is an overview of trophic mutualism?

A

Partners specialised in obtaining energy and nutrients
E.g. Rhizobium and plant roots that form nitrogen fixing root nodules in exchange for sugars
Cellulose digesting bacteria in the rumens of cows

63
Q

What is an overview of defensive mutualism?

A

Involve species that receive food or shelter from their partner in return for a defensive function
Ants and ant plants -> ants defend plant but gain a stable home

64
Q

What is an overview of dispersal mutualism?

A

Involve animals that transport either:
Pollen in return for nectar
Seed in return for a fruit reward

65
Q

What is an overview of leafcutter ant-fungus mutualism?

A

Ants cut leaved and feed to specialised fungus
Fungus digests plants and makes ant food, feed their larvae
Essentially the ants are fungus farmers

66
Q

What is an overview of the fungi in the ant fungi mutualism?

A

Different ant colonies keep different fungi
Fungal colonies can be huge – e.g. big lecture theatre underground
Others are small under a leaf

67
Q

How is the fungus spread between colonies?

A

Fungus is vertically transmitted through ant colonies
When new ant queens are born and leave to start their own colony they will take some of the fungus with them from their original nest

68
Q

How competitive are the fungi?

A

If you mix samples from two different genotypes of fungi gardens they will kill each other – emit chemicals

69
Q

What has the mutualistic relationship between ant and fungi resulted in?

A

This creates an opportunity for parasites: Escovopsis mold

70
Q

How do ants control the mould?

A

Ants host bacteria which produce antibiotics and protect the ant and the fungus

71
Q

Why hasnt the pathogen/parasite evolved resistance and taken over the colony?

A

Red queen type thing - Predators are no better at killing their prey species after many generations of natural selection
Co-evolution of Pseudonocardia and Escovopsis
Pseudonocardia (bacteria): constantly evolving more effective and selective compounds to kill Escovopsis
Escovopsis (mould): constantly evolving resistance to antibiotics

72
Q

What is another advantage for the ants?

A

If you wash the ants, many bacterial species can be isolated
These bacteria also kill Escovopsis

73
Q

How diverse is the ant bacteria symbiotic relationship?

A

Each ant has as many as 10 different bacteria - microbiome

74
Q

How have ants managed to prevent the outbreak of Escovopsis from resistance to anibiotics?

A

So the ants are producing many anti Escovopsis drugs which are changing all the time
This maintains effectiveness as the Escovopsis can not have total resistance to that many antibiotics
This is similar to how tumours and antibiotic resistant pathogens are targeted and treated now

75
Q

What are the competing model for the ant bacteria symbiosis?

A

Vertical transmission - One coevolved species: Pseudonocardia evolving in arms-race fashion against Escovopsis
Horizontal transmission - Ant “recruits” many useful species of bacteria from the soil. No need for an arms race

76
Q

How could we test the vertical transmission model of the ant bacteria symbiosis?

A

Phylogenetics
If specific Pseudonocardia species had coevolved with leaf cutter ant species -> then we might expect to see more similar ant species with more similar Pseudonocardia
ISome instances where Pseudonocardia had been picked up and then it would stay with those species – co-speciation
This would cluster on a phylogenetic tree

77
Q

How was the idea for vertical transmission of bacteria to ant host tested?

A

Mueller collected sequences for Pseudonocardia from a database and built a phylogeny
Many isolated from the soil
Those from ants are highlighted in yellow
These are not clustered, Pseudonocardia evolved many times to colonise ants

78
Q

What were the conclusions from the investigation from Mueller for vertical transmission of bacteria to ant hosts?

A

Mueller et al. concluded that Pseudonocardia have regularly been recruited from environments sources (soil) eg Horizontal transmission
However this is not a very strong test…
It was based on limited data

79
Q

What was the response to bacteria and ant hosts being horizontally transferred?

A

Colours link the ants/pseudocardia to the fungi - grouping on the tree
Cafaro et al. concluded that some Pseudonocardia species have been recruited from the soil and passed down the generations and co-diversified and co-evolved with the attine ants

80
Q

What was the experiment done by Barke et al about the transmission of bacteria to ant hosts?

A

Barke et al. used a combination of genome scanning and tandem multispectral spectroscopy to show that Pseudonocardia produces an (antifungal) nystatin compound that is new to science.
Suggests that Pseudonocardia has evolved a new compound
Consistent with innovation and vertical transmission/coevolution, arms-race hypothesis

81
Q

What are the current evidence for both modes of transmission of bacteria to ant?

A

Vertical transmission - One vertically transmitted symbiont: Pseudonocardia, evolving in arms-race fashion against Escovopsis
Horizontal transmission - Many screened-in useful species from soil

82
Q

What is the hypothesis for both vertical and horizontal transmission of bacteria to ants?

A

The attine ants can selectively recruit anti-biotic bacteria from the soil (but they need some help priming the pump)

83
Q

What was a similar mechanism in ants that were found in corals?

A

Corals keep antibiotic producing bacteria in their surface mucus
After bleaching disease causing bacteria dominates

84
Q

What can model the bistability of coral?

A

This bistability can be modelled using 4 ‘simple’ equations

85
Q

What is a simple overview of each of the microbial community equations?

A

dS / dt = change in substrate (food)
dB / dt = change in beneficial bacteria (antibiotics)
dA / dt = change in antibiotics
dP / dt = change in pathogenic bacteria (no antibiotics)

86
Q

What are the 2 kinds of competition in ecology?

A

Scramble = faster growth = winner
Interference = better fighter = winner

87
Q

What is antibiotic production an example of?

A

Antibiotic production is interference competition

88
Q

Who wins between pathogen or beneficial bacteria?

A

We have alternative stable states ‘bistability’
Who wins depends on starting conditions

89
Q

What conditions favour pathogenic bacteria?

A

If you start with more Pathogens, then the Pathogens win.

90
Q

What conditions favour benefical bacteria?

A

If you start with more Beneficials AND there is lots of food, then the Beneficials win.

91
Q

Why do beneficial bacteria require more food?

A

Antibiotic production requires lots of food which is used to kill pathogenic bacteria

92
Q

How do ants start with more beneficial bacteria?

A

Vertical transmission ‘primes the pump’

93
Q

What promotes horizontal transfer of beneficial bacteria?

A

Pseudonocardia allows selective recruitment of another Actinobacteria
Because antibiotic-producing bacteria are resistant to antibiotics (the ‘resistome’)

94
Q

What is current idea behind transmission of beneficial bacteria to ants?

A

Vertical transmission – Initial Pseudonocardia
Horizontal transmission – other actinomycetes

95
Q

What are the current bacteria relationship and how was this discovered?

A

Worsley et al., used stable isotope labelled sugar water and showed that the ants do feed lots of different kinds of bacteria, including Pseudonocardia and Streptomyces

96
Q

Do antibiotic producing bacteria outcompete non antibiotic producing bacteria?

A

Holmes et al., competed Streptomyces against a series of non-antibiotic producing bacteria
Streptomyces won only when the agar was filled with Pseudonocardia toxins.