Week 4 Flashcards
How do the conditions for bacteria change from mouth to anus?
Becomes increasing anaerobic
Bacterial density changes along the GI tract how?
Becomes more so the further along the GI tract you go
How quickly food travels through GI tract means what about toxins?
Affects exposure to toxins consumed. I mean, food it literally in the colon for 10 hrs to several days, Vs 3-5 hrs on the small intestine
When is your personal microbiota fairly constant?
Well like from toddler, through to adult, through to maybe like 65 at elderly age where it may change a little
NB babies, at the moment, are considered sterile before birth. Then diet expansion means change microbiota
6 things the gut microbiota does
1) defence against pathogens
2) modification of host secretions (mucin, bile, gut receptors etc.)
3) metabolism of dietary components
4) production of essential metabolites to maintain health
5) development of the immune system- immune priming
6) gosh signalling with gut-brain axis
How does the gut microbiota helps with defence against pathogens?
Competition
Barrier function
pH inhibition
What type of food actually feeds the microbiota?
Fibrous food - though doesn’t actually give much energy aha
Benefits of dietary fibre?
Improves faecal bulking - shorter transit time so less toxin exposure
Metabolism of it = antioxidants, vitamins etc
Bacterial fermentation of the fibre leads to what
Maintains slightly acidic pH
Digesting fibre takes energy, meaning high epithelial cell turnover, = what
Less disease
Metabolism of the gut microbiota varies as you go along. Where is turnover rapid vs not?
Right/proximal cells has high turnover.
Vs turnover slow in the left side.
That is why colorectal cancer is more often on the left side, and more serious on the right hand side
Is the left or right side of the colon more carb rich?
Right/proximal side more carb rich
Most bacterial fermentation occurs on which side of the colon
Right
Short chain fatty acids mainly produced on which part of the colon
Transverse
Major product of carb metabolism?
Short chain fatty acids
Also gases! (CH4, H2, CO2)
pH acidic Vs neutral which side of colon?
Slightly acidic right, neutral on the left.
Three important short chain fatty acids produced by gut microbiota?
Butyrate
Propionate
Acetate
Right side of the colon
Why does the body accept the microbiota?
Because the immune system essentially ‘grew up’ with it
More protein fermentation occurs where in the colon?
Left side of the colon
Bacterial fermentation does what to the pH
Lowers, leading to pathogen inhibition
Link between IBD and microbiota?
Inflammation could be an immune response to microbiota. Anyways
What do antibiotics do to the microbiota?
Reduces diversity
Explain the barrier effect of the gut microbiota as defence against pathogens?
Commensal bacteria close to the epithelium block and prevent adhesion/colonisation by pathogens
These are present in the mucosal layer
How might diarrhoea alter microbial composition?
Decreased transit time
In IBD, the desire to eat less fibre may lead to what?
Changes in the microbiota
MS is linked to the dysbiosis of gut microbiota, true or false?
True
Dysbiosis if the gut microbiota is linked to autoimmune diseases such as
Rheumatoid arthritis
“Dysregulation of immune response leads to chronic gut inflammation” what is this describing?
IBD
Faecal microbial transplant may occur in a patient with recurring C. difficile . What is the efficacy of this treatment?
High
Prebiotics Vs probiotics
Pre = food for microbiota
Pro = actual bacteria
Effect of carbs in the numbers of butyrate producing bacteria?
Decreased carb intake
Significant decrease in numbers of butyrate producing bacteria
What does butyrate do about colon cancer?
Protects against development of colon cancer
Prebiotics do what to SCFA production by gut microbiota?
Stimulates it.
SCFAs are important for control of body weight, and insulin sensitivity
Increased consumption of dietary fibre increases risk of colon cancer
False
How common is acute GI bleeding?
Very
Before a case of acute GI bleeding, a few weeks history may look like?
Dyspepsia
Reflux
Epigastric pain
Heart burn Vs indigestion?
Heart burn = stomach acid into oesophagus
Heart burn is a type of indigestion.
Dyspepsia Vs heartburn location
Dyspepsia = pain/discomfort behind upper abdomen
Burning pain behind breastbone = heart burn
What feature “separates” (not literally) the upper and lower GI tract?
Ligament of treitz
So upper is proximal to the ligament, whilst lower is distal
Magenta stools usually in upper or lower GI bleeding?
Lower
Is upper or lower GI bleeding elevated urea?
Upper.
Normal urea in the lower GI tract
Is upper or lower GI tract associated with dyspepsia, reflux and epigastric pain, Vs typically painless
Upper = pain
Haematemesis is upper or lower GI tract bleeding?
Upper
Lower is more likely to be fresh blood, Vs upper = partially digested blood
Upper or lower GI tract bleeding is associated with Non steroidal anti-inflammatory use
Upper
Why elevated urea in upper gi bleeding
It’s partially digested blood, = haem, = urea
Two common, general causes for upper GI bleeding?
Ulcers (in all areas)
And
“Itis” = inflammation.
Eg
Oesophagitis
Gastritis
Duodenitis
(Tend to bleed in the context of abnormal clotting)
What’s a Mallory Weiss tear?
Test due to vomiting
Could be a cause of upper GI bleeding
Why might oesophageal varices occur???
Due to liver diseases. Eg cirrhosis = portal Hypertension, blood starts to go elsewhere, so you get oesophageal varices i.e. dilated submucosal eos veins connecting portal and systemic circulations
Why might you ask about peeing with GI bleeding?
No pee could indicate loss of circulating volume
What drug history do you ask about for peptic ulcers?
NSAIDs
Family history of peptic ulcers may raise suspicion of what possible infection
H pylori
How does a peptic ulcer happen
1) damaging force e.g. gastric acidity, peptic enzymes
against this is defensive forces of like, regeneration, bicarbonate, surface mucin
2) but increased injury - eg alcohol, NSAIDs, h pylori infection, ciggies, gastric hyper acidity, OR like ischaemia, shock etc
3) ulceration formation. With necrotic debris, inflammation, granulation tissue, little fibrosis etc.
Chronic amount of peptic ulceration = increases risk of carcinoma
Which type of upper GI ulcers are more common
Duodenal
Risk factors of peptic ulcers
H pylori
NSAIDs/ aspirin
Alcohol excess
Systemic illness- stress ulcers
How does h pylori help cause a peptic ulcer?
1) penetrate mucus layer, adheres to epithelial cells in gastric mucosa
2) bacteria releases urease to convert urea to ammonia as a higher pH buffer around it.
3) but then the body increases acid. This leads to loss of mucus, epithelial cell inflammation and damage etc
What’s diuelafoy?
Submucosal arteriolar vessel eroding through mucosa
Example causes of lower GI bleeding
Diverticular disease
Haemorrhoids
Vascular malformations
Neoplasia eg polyps
Ischaemia colitis
Radiation
IBD
What’s diverticula disease
Protrusion of the inner mucosal lining through the outer muscular layer, forming a pouch
Usually self limiting
What’s a haemorrhoid
Enlarged vascular cushion around anal canal
Painful if thromboses
Association with straining/constipation/low fibre diet
Common/ rarely serious bleeding
Treatment of haemorrhoid?
Treatment of elective surgical intervention
Ischaemic colitis is what
Disruption in blood supply to the colon
How does ischaemic colitis present?
Crampy abdominal pain
It’s often self limiting
Radiation procitis can lead to lower GI bleeding. Has history of radiation for what cancers? (Typically)
Cervical and prostate cancer
Chronic loss of blood through radiation proctitks could lead to what treatment?
Blood transfusion treatment
IBD often has acute lower GI bleeding, true or false
False
Usually slower onset, with diarrhoea symptoms
If no small bowel bleeding for GI bleeding cause is found, what could it be?
Meckels diverticulum
Or
Small bowel ulceration eg NSAID associated
What to do if someone presents to A&E with GI bleed?
Resus.
Diagnose and figure out treatment.
Then endoscopy once stable.
Consider meds e.g. PPI (espc. for peptic ulcer)
Possible management for varices?
Band ligation
(Leads to damage to blood vessels, and therefore necrosis, goodbye varices)
Is the duodenum retroperitoneal or not?
Yes it is
Is the jejunum retroperitoneal or not?
No. Jejunum is actually IN the peritoneal cavity
Ascending and descending Vs transverse, which is retro
Ascending and descending is retro
There villi in the large bowel?
No
So we’ve got the meisseners plexus and the auerbachs plexus. Which, as the myenteric plexus, mediates peristalsis?
Trick question
Obvs both is the myenteric plexus
So both control peristalsis
Name the 5 types of inflammatory bowel disease
UC
Crohns
Ischaemic colitis
Radiation colitis
Appendicitis
NB you also get idiopathic inflammatory bowel disease-
Idiopathic bowel disease definition (crohns and UC- they are idiopathic)
Chronic inflammatory conditions resulting from inappropriate and persistent activation of the mucosal immune system, driven by normal presence of microbiota
In IBD, defects in the normal surface barrier function of epithelium leads to what?
Exposure to the underlying lamina propria, and the immune cells, to normal flora- that doesn’t normally happen
Diagnosis of IBD requires clinical history, radio graphic examination, and pathological correlation. What presence of antibody is associated, as well?
Perinuclear antineutrophilic cytoplasmic antibody
If UC is limited to the rectum, what is it called?
Proctitis
UC is limited to the colon. So what’s backwash ileitis?
It spreads slightly through the ileocecal valve, into the terminal ileum.
Are there Granulomas for ulcerative colitis?
No
How does neoplasia secondary to colitis?
Keep repairing epithelia cells, then green tic defects and dysplasia
Is IBS a structural or functional disorder?
Functional
Functional GI disorders have a large impact on quality of life, and a large cause of work absences. Most functional GI disorders can be diagnosed with history examination, true or false.
True
Usually don’t need expensive or invasive investigatiosn
Retching Vs vomiting?
Retching is dry heaves, antrum contracts, glottis closed
Vomiting is where the contents are actually expelled
If you vomit immediately after food, then it’s often:
Psychogenic
If we vomit like an hour or more after food, issue is further down the GI tract. If it’s an hour or more, think of an example of why we’re bringing up?
Pyloric obstruction
If vomiting more than 12 hours later, obstruction where?
Maybe small bowel obstruction
With functional disorders, why is a short symptom history suggestive of more serious pathology?
Functional symptoms are usually present for longer period
Why do we ask about nocturnal symptoms with functional bowel disorders?
They wouldn’t usually bother patients at night
For bowel issues, why do we take a detailed drug history e.g. ask about recent antibiotic use?
This can cause opportunistic infections like clostridium difficile
Thyroid disorders can present with changes in gut function. For example an overactive vs under active thyroid can present with what stool
Over- active = diarrhoea
Under- active = constipation
Constipation doesn’t mean hard poo. What does it mean?
Bowel doesn’t get properly emptied/ emptying too infrequently
Psychiatric disorders such as depression or psychosis are often associated with what bowel issues?
Development of constipation
Hypercalcaemia can cause what bowel issue?
Constipation
What’s ‘colicky’ pain?
A pain that starts and stops abruptly.
It occurs due to muscular contractions in an attempt to relive an obstruction by forcing contents out. It may be accompanied by sweating and vomiting.
Could ‘colicky pain’, with altered bowel habit and abdominal bloating, without weight loss of blood, normal exam and bloods, be what?
IBS
For IBS, often we need to see that symptoms do what with eating and defecating?
Worse with eating
Better with defecating
How might a patient describe IBS pain?
Spasm
Burning
Sharp
Similar to period pain
Often radiating to lower back
IBS patients have an increase or decrease in gut feedback?
Increase
Altered bowel habits for IBS- is this more co stop action or diarrhoea?
Can be either or both. Often with a sense of urgency.
Why bloating in IBS?
Relaxation in abdominal wall muscles
Mucus in stool present in what disease?
IBS
When thinking about IBS, why do we check coeliac serology?
Because IBS has very similar symptoms to coeliac disease
Calprotectin is an inflammatory protein that helps us to distinguish between IBD and IBS how?
It’s in uc and crohns. Can monitor IBD with it.
Nb IBD is crohns and uc
Nb calprotectin is higher in older patients anyway so not useful over 50 (plz fact-check this)
What food might you exclude for IBS?
Tea, coffee, alcohol, sweetener, lactose, gluten
Which finds abnormal findings on colonoscopy, IBS or IBD?
IBD
Which has elevated CRP, IBD or IBS?
IBD
What is IBS caused by?
Disturbance in gut-brain interaction. Leading to troublesome symptoms. It’s a functional disorder- no identifiable disease
Are all the meds available for IBS, always effective?
No
Why CBT in IBS?
To cope with symptoms like abdominal pain
Psychology has shown to be very effective in functional disorders.
In IBS, what may happen to peristaltic contractions after someone starts eating?
May be stronger
(Slightly unrelated but…There is a theory that the gut provides more signals in patients with functional bowel disorders to the brain, so we’re more aware of what’s going on in the gut. Eg slight need of hunger, or urge to defecate).
Guts response to stress in IBS?
Increased/ more sensitive.
Like it’s normal to get butterflies and diarrhoea in response to stress, but this response can actually become chronic in IBS
Bloody diarrhoea typical of IBS or Uc?
Ulcerative colitis
If the whole colon is affected, i.e. ‘pancolitis’, in UC, what will the patient need?
A colectomy
Does UC progress?
Obvs. It wasn’t always there.
1/3 of patients with ulcerative colitis will require a colectomy within 10 years of a diagnosis.
In procitis, inflammation is confined to what part of the bowel only?
Rectum only
Is there a sense of urgency with IBD?
Yes like 50% of patients
What sub type of UC requires you to ask if there is any history of receptive anal intercourse?
Procitis
Where inflammation only of the rectum
To see if positive for chlamydia or gonorrhoea
Albumin level in IBD?
Decrease
This is Vs CRP, and platelets which are higher
Elevated faecal calprotectin is 200ug/g. What would be a normal level?
0-50
Gold standard investigation for UC patients?
Colonoscopy and biopsies of mucus a
How is calprotectin produced?
Trigger
Activation of gut immune system, and generation of calprotectin from a number of cells eg epithelial, monocytes, neutrophils, etc.
Released into gut lumen, then into faecal stream.
What other diseases, apart from IBD, causes high calprotectin?
Gastroenteritis
Diverticulitis
Ischemic colitis
If acute severe colitis (colitis meaning Colin and rectum inflamed), we check stool cultures for which bacteria?
C. Diff
If acute colitis, we give IV what?
Steroids
Also make sure they are adequately hydrated
Also a lot of patients may have low potassium due to diarrhoea, so let’s correct that please
Crohn’s disease can start as simply inflammatory, but then it progresses to what?
Stricturing, and then the disease can become penetrating and cause a fistula.
How often are crohns anorexic?
Often
By that I mean, just poor appetite. They can also present with nausea and vomiting.
How often are crohns patients malabsorbed/ anaemic and vitamin deficiency?
If it’s significant disease in their small bowel.
Blood markers for crohns?
For markers of inflammation
Why look at stool cultures for crohns?
To rule out infection, if complaining of diarrhoea
There is a depleted number of what type of cell in ulcerative colitis?
Goblet cells
UC Vs crohns for crypt abscesses?
Both
(Though more in UC)
Why will most Crohn’s disease patients require surgery over their lifetime?
What starts as an inflammatory disease, soon progresses into a penetrating disease (transmural) that causes Stricturing, abscesses, and possibly at the end: fistulas
So need surgery to treat abscesses or fistulas
Smoking and IBD?
No smoking = higher risk for UC lol
Smoking = higher risk for crohns, increased risk of requiring surgery and increased risk of developing disease again after anastomosis or joins after surgery
Symptoms of peri anal crohns diseases?
Perianal pain
Pus secretion
Unable to sit down
What investigations for perianal Crohn’s disease?
MRI pelvis and examination under anaesthetic
What treatment for peri anal Crohn’s disease?
Surgery to drain abscess from fistula
Then also antibiotics
Extra-intestinal manifestations of IBD?
Eye problems
Liver problems like ‘primary biliary cholangitis’
Rashes
Mouth ulcers
Musculoskeletal problems
Do the extra-intestinal manifestations of IBD, run the same, or an independent course to the colitis?
Could be independent. Colitis May be in remission, and/or there could be no bowel symptoms, but there could be extra-intestinal manifestations
Give an example of skin rash/lesion seen in IBD?
Erythema nodosum
Raised tender nodules typically on the front of the shins
Patients with both ulcerative colitis, and primary sclerosing cholangitis, have an increased risk of what?
colorectal cancer
How could pancreatitis cause chronic diarrhoea?
Because of malabsorption
‘Colitis’, meaning inflammation of the colon, can be due to crohns and uc, but what else?
Infective or ischaemic colitis as well