Week 2 material Flashcards

1
Q

Lamark
1. Before who?
2. What did he believe?
3. What’s the theory?

A
  1. Before Darwin
  2. Believed organisms arose from evolutionary process
  3. Lamarckism - Use + disuse for phenotypic characteristics: organisms could pass on acquired characteristics to offspring
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2
Q

Lamarckism theory

A

use: most freq used phenotype will become stronger + larger + more developed over time

disuse: least freq used phenotype will become weaker + smaller + degrade over time

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3
Q

What are transmembrane segments?

A

HYDROPHOBIC regions in membrane

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4
Q

What are carriers + channels composed of?

A

trans-helical transmembrane segments

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5
Q

What is TMS useful for?

A

for providing hints on protein’s structure

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6
Q

A SMALLER TMS # is indicative of
a) a smaller protein
b) a larger protein

A

a) a smaller protein

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7
Q

A LARGER TMS # is indicative of
a) a smaller protein
b) a larger protein

A

b) a larger protein

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8
Q

Evolution of channels + carriers

What came first?
a) channels
b) carriers

A

a) channels

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9
Q

How many TMS in channels? in carriers?

A

Channels: 1, 2, or 3
Carriers: none w/ only 1 TMS

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10
Q

Why is it that channels came BEFORE carriers?

A

Channel came first bc of low TMS #
Carriers came second bc of high TMS #

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11
Q

What is the MAIN difference between a carrier + a channel?

A

Movement
-a carrier has a binding site + can move
-a channel is a pore where movement is irrelevant

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12
Q

What does it mean to duplicate TMS? Will this lead to an odd and/or even # of TMS?

A

an EXSISTING TMS segment within a gene being copied
- Results in EVEN # of TMS

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13
Q

What is meant by addition of TMS? Will this lead to an odd and/or even # of TMS?

A

new TMS segment being inserted into the protein sequence
- can lead to odd OR even TMS #

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14
Q

What is morphogenesis?

A

biological process that shapes an organism during its development

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15
Q

What is the function of tubulins + where is the protein found?

eukaryotes or bacteria?

A

Function: cell division
Found In: eukaryotes

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16
Q

What is the function of Actin + where is the protein found?

A

Function: used for motion
Found In: eukaryotes

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17
Q

What is the function of intermediate filaments (IFs) + where is the protein found?

A

Function: structural support + organization to cells and tissues
Found In: eukaryotes

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18
Q

What is the function of FtsZ + where is the protein found? what protein found in eukaryotes is it similar to?

A

Function: essential for forming 2 cells from 1 during cell div
Found In: bacteria

Like tubulins in eukaryotes

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19
Q

What is the function of MreB + where is the protein found? what protein found in eukaryotes is it similar to?

A

Function: motion
Found In: bacteria

Like actin in eukaryotes

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20
Q

What is the function of crescentin + where is the protein found? what protein found in eukaryotes is it similar to?

A

Function: IF for bacteria
Found In: bacteria

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21
Q

What’s the difference between tubulins vs FtsZ in terms of structure?

A

Tubulins - hollow tubes
FtsZ -single strand polymers

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22
Q

In a phylogenetic tree, the further apart, the…
a) later the divergence occurred in time
b) earlier the divergence occurred in time

A

b) earlier the divergence occurred in time

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23
Q

What is a Divisome?

A

Complex of proteins that help cell division
1 stimulates, 1 regulates
1 builds, 1 disassembles

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24
Q

What are 2 types of Divisomes?

A

1) Fts - filament temperature sensitive
importance: 1 protein works at a given temp but NOT the other

2) Pep - Penicillin binding proteins
Importance: involved in cell wall synthesis

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25
What if there is NO cell wall?
then death of cell
26
In rod shape bacteria, whats the role of FtsZ? MreB?
FtsZ: ring in center MreB: helps keep shape
27
what's the role of Crescentin? what if there were no Crescentin? where does it localize? what kind of helices is formed? | for curved shaped bacteria
Crescentin: maintins curvature of bacteria NO Crescentin, NO crescent shape, YES rod shape Localizes to short axis of cell Left handed helices
28
What if (IF) encoding proteins were lost?
cell will loos its shape + loss of pathogenesis (how virulent)
29
What is Magnetosomes? what happens if bacteria is moved from north to South Pole?
Bacteria that responds to magnetic + earth fields Swimming direction changes - Move from wrong direction + away from soil + nutrients
30
Define Microbiome How many microbiomes per tissue
Microorganisms in an environment - Living organisms + their genes 1/tissue
31
What is the tissue w/ the MAJORITY of bacteria?
Gut aka gastrointestinal tract
32
What is found in the gut? a) archaea b) viruses c) fungi d) bacteria e) all of the above
e) all of the above
33
what does the bacterial composition depend on? 4 points
1. genetics 2. environmental conditions 3. disease state (if one has a disease or not) 4. Diet (want to eat well + constant)
34
Define microbiota
a collection/community of microbes in an organismal tissue -actual living organism ONLY
35
In human microbiota, what does each tissue microbiome influence?
health + activity of many tissues
36
Is the immune system in each tissue different?
YES
37
What are the 2 types of immune system | which is fast, which is slow, which is general, which is specific
1) innate = fast + general 2) acquired = slow + specific
38
What does the immune system regulate? how?
Regulates homeostasis Via restoration of damaged tissue + function
39
What is meant by homeostasis?
constant composition of microbial community
40
how does the Immune system control relationship between host + microbiota? | keeps what alive and kills what
Immune system kills pathogenic virulent while trying to keep commensal bacteria alive (some good bacteria can/will still die)
41
What would the optimal relationship between the microbiota + the immune system
Optimal relationship - when relationship is symbiotic such that microbiota works ALONGSIDE host + AGAINST pathogens
42
Why is it important to have/maintain a healthy microbiota
to REINFORCE barrier immunity of host
43
Where is the healthy microbiota commonly found?
in infection prone areas
44
what is the 1st defense against pathogens?
Mucosal “firewall” formed in intestine to keep invaders out of host tissues
45
what is the 2nd defense against pathogens?
epithelial cells producing antimicrobial peptides
46
what is the 3rd defense against pathogens?
macrophages
47
what is the 4th defense against pathogens?
adaptive immune cells associated w/ dendritics - type of immune cell
48
what does the host do to limit inflammation + microbial translocation?
limit contact
49
what is microbial translocation?
transfer of bacteria from lumen → tissue
50
What's the function of the microbiota? what is a characteristic?
Provide protection to inflammatory disorders, specifically in gut highly dynamic + complex and characterized by large # of ligands + metabolites
51
what does the composition + density (in gut) correlate w/ ?
host immunity
52
What is the gut-brain axis (GBA)?
communication between 2 organs: the gut and the brain
53
How is GBA controlled?
via permeability of BBB (blood brain barrier)
54
Human gut: which organ contains largest population of COMMENSAL organisms?
GI tract
55
What factors affect the composition of intestinal microbiota?
personal genetics + host immune system + environmental factors
56
why kind of mechanism does the human gut contain? | hint: immune system
mechanisms that reduce immune repose to non-harming + health promoting antigens
57
what happens if mechanisms found in the human gut are broken down?
Break down leads to chronic inflammatory conditions such as IBD (inflammatory bowel disease)
58
what affects the human microbiota?
dependency between host's diet + commensals + immune system
59
What if there is a sudden change in diet?
microbiota gut unpredictably responds such that it can lead to diseases
60
diet determines what? a) microbial composition b) immune system c) microbiome
a) microbial composition - microbiota c) microbiome
61
Microbial composition determines what? a) diet b) immune system c) microbiome
b) immune system
62
Immune system determines what? a) diet c) microbiome
a) diet
63
Human gut microbiome is a combination of (select all that apply) a) age b) sex (not that kind 🤪) c) diet
A, B, C
64
what is the role of the gut microbiome? 3 points
digestion of certain foods + Synthesize vitamins + immunity regulation
65
What's the primary function of the gut's microbiome? | what does gut influence thrughtout the body? what does it result in?
gut influences other organs throughout the body - resulting in symbiosis of different tissues whitIN body
66
How does the communication between the gut and the brain occur?
via biochemical signaling between GI's nervous system + the brain
67
What are the 2 types of nervous system?
ENS = enteric nervous system where ALL nerve cells present in gut CNS = central nervous system where ALL nerve cells are associated w/ the brain
68
Links between gut microbiome + health + psychological conditions?
Chronic pain + sleep problems + depression + anxiety + autism
69
What is the purpose of the BBB?
Helps keep brain free of pathogens -Tight junction instead of pores to restrict movement - Almost NO bacteria on other side of BBB
70
what is the function of blood vessels?
regulate movement of ions + cells + molecules
71
What's the purpose of Zonulin?
to reinforce the tight junctions of the blood vessels
72
what is the purpose of glial cells?
to support structure of blood vessels via surrounding blood vessels
73
whats the relationship between diet + environmental stress in terms of the microbiota?
diet + environment stress alters GI microbiota
74
is the [bacterial] in stomach high or low? why?
LOW given high acidity due to secretion of protons into lumen of stomach
75
regulation of what is affected under stressful conditions?
regulation of localization of pathogenic bacteria populations
76
What is the function of gut-brain axis (GBA)? aka, how does the brain communicate w/ microbes in gut?
Brain communicates w/ microbes via neurotransmitters like serotonin/dopamine
77
20% of serotonin made in the ....... while 80% of serotonin made in the........ a) gut b) brain
brain, gut
78
What are 6 hormones produced in the gut?
Adrenaline + epinephrine + Cortisol + Buyerate + sIgA + leptin
79
Adrenaline + epinephrine + Cortisol are all hormones associated with....
fight or flight response
80
Butyrate is a...
metabolite that alters activity of bbb cells
81
Secretory immunoglobulin A (sIgA) is...
a crucial antibody
82
leptin is...
produced by fat cells + primary function is regulating appetite and metabolism
83
Microbial signaling occurs via...
Microbes produce chemicals w/ ability to interact w/ brain
84
The interaction between microbes + GBA is...
bidirectional via neural + endocrine + immune links
85
A mechanism of communication between the brain and microbes is known as Peripheral serotonin where...
the serotonin neurotransmitter is produced in large quantities via cells in gut which affects the signals sent to the brain
86
A mechanism of communication between the brain and microbes is known as immune system where...
the intestinal microbiome prompts IS to produce cytokines such that it influences neurophysiology ex. IL-6 which affects stress levels
87
A mechanism of communication between the brain and microbes is known as bacterial molecules where...
Metabolite (butyrate) is produced via microbes altering BBB cell activity
88
What do microbes release that affects the BBB? provide an example of how BBB can be affected.
release molecules BBB - can become more/less permeable which affects which ions + small biochemicals enter/exit the brain
89
what is BBB impermeable to?
sugras + some nutrients
90
Is almost all life microbial? Low or high diversity? what does microbial life control?
YES HIGH global + local biochem
91
what are the 3 main greenhouse gasses?
CO2, N2O (nitrous oxide), CH4 (methane)
92
Rank the green house gases from WORSE to BEST
WORST: N2O > CH4 > CO2: BEST N2O - 200x worse CH4 - 25x worse