W2 - BACTERIAL GROWTH Flashcards
3 types of classification system
Numerical classification
Phylogenetic classification
Phenotypic classification
Basis: frequency of trait-sharing (phenetics)
Numerical taxonomy
Numerical taxonomy is also called
Computer taxonomy
Has 20 biochemical tests for bacteria identification; collect/compile posi/nega reactions in the biochemical test
Analytical Profile Index (API)
ID VALUE: 32143
Enterobacter cloacae
Enterobacter sakazakii
ID VALUE: 32143 E. cloacae (Atypical test result & Confirmatory test)
Sorbitol- = -
ID VALUE: 32143 E. sakazakii (Atypical test result & Confirmatory test)
Urea+ = +
ID VALUE: 32161 (Atypical test result & Confirmatory test)
None = V-P+
ID VALUE: 32162 (Atypical test result & Confirmatory test)
Citrate- = no confirmatory test
Automated instrument for bacterial identification and antimicrobial susceptibility testing
VITEK 2
Basis: genetic similarity and evolutionary relatedness
Phylogenetic classification
3 domains of phylogenetic classification
Bacteria
Archaea
Eukaryota
Phylogenetic classification: Bacteria
(Green ProTABS PC+; 9)
Green filamentous bacteria
Proteobacteria
Thermotoga
Aquifex
Bacteroides Cytophages
Spirochetes
Planctomyces
Cyanobacteria
Gram positives
Phylogenetic classification: Archaea
(MethaTHaloP; 7)
Methanobacterium
Methanococci
Methanosarcina
T. celer
Thermoproteus
Halophiles
Pyrodicticum
Phylogenetic classification: Eukarya
(PEAS FC FT MD; 10)
Plants
Entamoebas
Animals
Slime molds
Flagellates
Ciliates
Fungi
Trichomonads
Microsporidia
Diplomonads
Basis: overall similarities
Phenotypic classification
Observable characteristics (phenotypic classification)
Microscopic characteristics
Colony morphology
Group or level of classification
Taxa/Taxon
Hierarchical system within domains (high to low)
Domain
Kingdom
Phylum
Class
Order
Family
Genus
Species
Basic unit of taxonomy
Species
Represents a specific, recognized type of organism; identified by comparison w known “type strains”
Species
No mixture of oth organisms
Pure culture
An organization that stores and provides standard cultures to the academe, researchers, etc.
American Type Culture Collection (ATCC)
Num of times an organism was cultured
Passage
Limit of pure culture passages
5
Population of microbes descended from a single individual or pure culture
Strain
Strains represent - within a species
Genetic variability
3 classification of strains
Biovars
Morphovars
Serovars
Differ in their biochemical and physiological characteristics
BIOVARS
Differ in morphology
Morphovars
Strains based on antigenic property or serum
Serovars
Ex. Biovars
Ureaplasma urealyticum
Ex. Morphovars
Corynebacterium diptheriae
● Coyrnebacterium mitis
● Corynebacterium intermedius
● Corynebacterium gravis
Ex. Serovars
Salmonella enterica
Escherichia coli honors -
Theodor Escherich
Main resource for determining the identity of bacteria species, utilizing every characterizing aspect
Bergey’s Manual of Systematic Bacteriology
Major elements
(MICHON PSP)
Magnesium
Iron
Calciuum
Hydrogen
Oxygen
Nitrogen
Phosporus
Sulfur
Potassium