W2, Flashcards

1
Q

Give an example of a pest whose lifecycle or migration is highly dependant on environmental conditions.

A

The Australian plague locust only migrates (at dusk) when temperatures are greater than 20 °C

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

True or False?

The more life cycles (or reproduction) in a period of time, the higher the likelihood for damage.

Another way of asking the same thing:

The lower the generation interval of a pest, the higher the likelihood of damage.

A

True.

The more life cycles, the more likely an epidemic. If you get to making secondary inoculum quicker, you enter a feedback loop where you make more and more inoculum.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Explain what is the most fundamental aspect of the ‘Environment’ side of the disease triangle.

A

It’s the interaction between environmental conditions that is important, not just one aspect.

For example, Phytophthora infestans, which causes potato leaf blight, needs the interaction of cool and moist conditions to become a problem.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Describe some of the impacts of moisture that affect the pest or host and the extent of damage/disease.

A
  • Dispersal of pathogens (e.g. fungal spores, nematodes)
  • Activates dormant pathogens (spore germination, etc)
  • Stimulates sporulation (e.g. downy mildew)
  • Water stress (too little or too much) weakens the host, making it more susceptible to attack.
    • e.g. Fusarium solani, dry root rot of beans
    • e.g. Streptomyces scabies, common scab of potato
  • Wet soils often favour reproduction and spread of zoosporic pathogens and most root rots and pathogens.
  • Not only the amount of moisture (water) available, but its seasonal distribution is also important.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Describe some of the effects that wind has on the pest or host and the extent of damage/disease.

A
  • Dispersal of pathogens (has the most impact with rain which washes spores down out of the atmosphere) and pests (able to fly further = wider distribution)
  • Causes damage to hosts (wounds through which bacteria, viruses, and fungi can enter)
  • Can dry out moisture films (which is a good thing - prevents infection and movement of pathogens)
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Describe how the disease pyramid differs from the disease triangle

A

It includes the interaction of two more factors:

  1. Time
  2. Humans
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Explain the difference between tolerance and resistance.

A

Tolerance:
The ability of the host to maintain its own growth or yield in spite of infection

  • e.g. quick replacement of leaves or roots that were damaged by the pathogen

Resistance:
The ability to hinder the development of potential pathogens

  • Can be constitutive (something that’s there all the time) or induced
  • A genetic trait
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

There are 3 types of resistance to pathogens that plants have; describe them.

A

Non-host resistance:

  • Plant remains healthy

Quantitative (polygenic) resistance:

  • Some infections and symptoms possible
  • Plants generally survive and produce

Monogenic (R gene) resistance:

  • Plants are either resistant and remain healthy, or are susceptible and become severely diseased.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Explain the difference between passive, active, and learned resistance

A

Passive (CONSTITUTIVE):

  • Genetic
  • Just happens to be the way the plant grows, looks, smells, etc
  • Prevents infection from occurring

Active (INDUCED)

  • Genetic
  • Relies on 2 layers of recognition

Learned (SYSTEMIC ACQUIRED RESISTANCE):

  • Doesn’t rely on genotype specifically
  • After the localised reaction to a pest attack, the plant develops a long-lasting, broad spectrum systemic resistance to later attacks
    • Usually maintained for > 20 days in most crop plants
  • Can be induced by applying salicylic acid (the hormone thought to be responsible) or a specific pathogen.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

List some examples of constitutive defences

A
  • Lignin/increased cell wall thickness
  • More cellulose
  • Cross-linking of the cell wall
  • Callose layers
  • Pectin
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Explain the hypersensitive response (HR) in plants.

A

A genetic trait that allows the plant to initiate cell death around the infection site to prevent further penetration of the pathogen.

Works well for biotrophs, not so well (at all) for necrotrophs.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

List some forms of barrier resistance.

A
  • Papilla (callose) formation (e.g. under the penetration peg of a spore)
  • Envelopment of bacteria in xylem
  • Vascular occlusion (basically block the xylem with callose or lignin to prevent the spread of bacteria)
  • Haustorial encasement (if they can’t access nutrients, they die)
  • Lignification
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Explain what Pathogenesis-related (PR) proteins are and do.

A
  • Coded by the host plant
  • Induced in response to the presence of substances associated with pathogens or insect pests
    • e.g. chitinases induced in response to detecting chitin, a substance found in insect exoskeletons, not plants.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Explain the difference between systemic acquired resistance and induced systemic resistance.

A

Systemic acquired resistance:

  • Requires a pathogen to first cause some damage

Induced systemic resistance:

  • Doesn’t require a pathogen, but does require an organism, usually a soil-dwelling bacteria, to induce phloem-mobile signals to induce a defence response
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

How do plants recognise they’re being challenged by a pathogen?

A

2 layers of recognition which both rely on resistant gene expression.

1st ‘basal’ layer - pattern recognition receptors

  • recognise any general pathogen molecule
    • flagellin (major protein in flagella)
    • chitin (insect exoskeletons and fungi cell walls)
    • amalayse (in insect saliva)
  • initiates defence response

immune response can be suppressed by viralence proteins (effectors) produced by the pathogen; that’s its way of making the plant susceptible.

2nd ‘Guard hypothesis’ layer

  • ‘Guard’ (resistance (R)) proteins basically watch for any changes to the host protein caused by virulence proteins (effectors)
  • If they’re detected, an ‘effector-triggered immunity’ response is initiated.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

What’s the molecular basis of disease resistance?

A

2 layers of recognition which both rely on resistant gene expression. Without being able to recognise that there’s a pathogen present, the plant won’t initiate a defence response.

1st ‘basal’ layer - pattern recognition receptors

  • recognise any general pathogen molecule
    • flagellin (major protein in flagella)
    • chitin (insect exoskeletons and fungi cell walls)
    • amalayse (in insect saliva)
  • initiates defence response

immune response can be suppressed by viralence proteins (effectors) produced by the pathogen; that’s its way of making the plant susceptible.

2nd ‘Guard hypothesis’ layer

  • ‘Guard’ (resistance (R)) proteins basically watch for any changes to the host protein caused by virulence proteins (effectors)
  • If they’re detected, an ‘effector-triggered immunity’ response is initiated.
17
Q

How stable is resistance?

A

Depends on how often the plant comes into contact with the pathogen and how many genes are involved in resisting it, but generally, resistance is not very stable and requires on-going breeding efforts to evolve to muting pathogen effectors.

There is a constant selection pressure on the pathogen to mutate (effectors), especially in monocultures.

Number of genes involved in resistance:

Monogenic resistance:

  • Only 1 resistance gene
  • Usually short-lived (e.g. cereal rusts - BOOM-BUST)
  • Some can be very stable (e.g. Fusarium wilts)

Multigenic resistance:

  • The goal for plant breeders
    • referred to as ‘pyramiding’ of genes
  • Multiple genes that basically act as a backup to prevent outbreak in case one resistance gene is circumvented.
  • Would require the pathogen to mutate several genes at once to overcome resistance by the plant

Polyploidy:

  • Where a plant has several copies of the genome (e.g. strawberries and wheat)
  • In other words, they can have several copies of the same resistance gene that are ever-so-slightly different, making them act as if they were separate genes entirely (like multigenic resistance)
18
Q

Explain how resistance is affected by the number of genes contributing to it.

A

Basically, the more genes that are involved in making the plant resistant, the better, because it means more hurdles for the pathogen to have to overcome (i.e. to evolve/mutate in order to circumvent).

Monogenic resistance:

  • Only 1 resistance gene
  • Usually short-lived (e.g. cereal rusts - BOOM-BUST)
  • Some can be very stable (e.g. Fusarium wilts)

Multigenic resistance:

  • The goal for plant breeders
    • referred to as ‘pyramiding’ of genes
  • Multiple genes that basically act as a backup to prevent outbreak in case one resistance gene is circumvented.
  • Would require the pathogen to mutate several genes at once to overcome resistance by the plant

Polyploidy:

  • Where a plant has several copies of the genome (e.g. strawberries and wheat)
  • In other words, they can have several copies of the same resistance gene that are ever-so-slightly different, making them act as if they were separate genes entirely (like multigenic resistance)
19
Q

Explain what ‘monogenic resistance’ is.

A
  • Only 1 resistance gene
  • Usually short-lived (e.g. cereal rusts - BOOM-BUST)
  • Some can be very stable (e.g. Fusarium wilts)
20
Q

Explain what ‘multigenic resistance’ is.

A
  • The goal for plant breeders
    • referred to as ‘pyramiding’ of genes
  • Multiple genes that basically act as a backup to prevent outbreak in case one resistance gene is circumvented.
  • Would require the pathogen to mutate several genes at once to overcome resistance by the plant
21
Q

Explain how polyploidy relates to the stability of plant resistance.

A
  • Polyploidy is when a plant has several copies of its genome (e.g. strawberries and wheat)
  • In other words, they can have several copies of the same resistance gene that are ever-so-slightly different, making them act as if they were separate genes entirely (like multigenic resistance).
  • = increased stability.
22
Q

Explain the BOOM-BUST cycle of certain plant breeding strategies.

A

Mostly a problem with monogenic resistance.

  • A new variety gets bred that has effective disease control because of a specific R gene
  • Use of the new variety increases (BOOM)
    • Everyone plants it because its this new-beaut variety that is resistant to the problem disease
    • Its a great success, disease levels for the season drop significantly
  • The selection pressure on the pathogen increases dramatically
  • The pathogen’s effector gene mutates
  • Farmers plant the same variety the next year because of how well it did the previous year
  • It’s now succeptible to the pathogen’s mutated effector(s), and the whole crop gets wiped out (for everyone who’s using it) (BUST).
  • Then have to go back to the drawing board and breed for a new gene…

This happened in 2009 with a variety of barley that was bred (at Waite (UA)) to be resistant to barley net blotch.

23
Q

What is the general timeframe for breeding a new resistant variety of cereal (for example)? Why?

A

Around 5-6 years, provided you can get 2 generations grown per year.

Backcrossing (crossing the resistant line with the elite line, then crossing the resistant progeny with the elite (parent) line, and so on) to usually takes ~8 generations (i.e. years).

Molecular markers to screen offspring for resistant genes can make the process quicker.

Identifying and deploying multiple resistance genes takes time!

24
Q

Describe some transgenic approaches for breeding resistance and any problems associated with them.

A
  • Inserting new resistance (R) genes
    • Same problem as with traditional breeding - BOOM-BUST cycle.
      • brassica with r genes inserted busted within 5 years.
  • Inserting ‘non-host’/’response’ genes
    • Like systemic aquired resistance where u just have a high level of pathogenesis-related (PR) proteins all the time
      • Overexpression of PR proteins can prevent lesion growth in tobacco with Tobacco Mosaic Virus (TMV).
  • Genome editing
    • e.g. changing a single nucleotide to code a protein to function in a different way
      • e.g. mlo in barley changed using CRISPR/Cas9 so it guards a different protein
  • Host-induced resistance
    • getting host to express siRNAs (short inverted RNAs) that degrade (pathogen effector) mRNAs (messenger RNAs), meaning that you eliminate the protein (no mRNA = no protein).
      • group in Germany developed siRNAs that can be sprayed onto the leaf to degrade fungal mRNA
  • Pathogen-derived resistance
    • e.g. tobacco plant modified to express the TMV coat protein (coats RNA core) will be unaffected by TMV because it recognises its own coat protein and thinks the plant cells are already infected.
    • without this, the papaya industry in Hawaii wouldn’t exist because of papaya ringspot virus.
25
Q

Given what you’ve learned about how pathogens or pests get in, what types of constitutive defence responses might a plant have and how would they prevent disease?

A

Constitutive defences are passive, genetic, and don’t require any recognition or response. Examples of constitutive defences to prevent disease could include:

  • Increased cuticle/cell wall thickness and/or the amount of cellulose/lignin to prevent penetration (e.g. insect stylets, spore penetration peg, etc)
  • Fast rate of healing and/or sap exudation to make entry into wounds more difficult.
  • Leaf sensitivity (movement when insects land = deterrent)
26
Q

What types of induced defence responses may happen and why?

A
  • Hypersensitive response (localised cell death surrounding the infection site to prevent further penetration of the pathogen).
    • good for controlling biotrophs, bad for controlling nectrotrophs.
  • Synthesis of pathogenesis-related (PR) proteins
    • (1,3)β-Glucanases, Chitinases, Peroxidases, etc.
  • Cell wall fortification (lignification, cross-linking, etc)
  • Barrier resistance
    • Papilla (callose) formation
    • Haustorial encasement
    • Vascular occlusion (block the xylem with callose or lignin to prevent the spread of bacterial pathogens).
      *
27
Q

How might we manipulate disease resistance to improve it?

A
  • Breed for multiple resistant genes (i.e. multigenic resistance)
    • (pyramiding genes)
  • Use transgenic approaches
    • Inserting new resistance (R) genes
      • Same problem as with traditional breeding - BOOM-BUST cycle.
        • brassica with r genes inserted busted within 5 years.
    • Inserting ‘non-host’/’response’ genes
      • Like systemic aquired resistance where u just have a high level of pathogenesis-related (PR) proteins all the time
      • Overexpression of PR proteins can prevent lesion growth in tobacco with Tobacco Mosaic Virus (TMV).
    • Genome editing
      • e.g. changing a single nucleotide to code a protein to function in a different way
      • e.g. mlo in barley changed using CRISPR/Cas9 so it guards a different protein
    • Host-induced resistance
      • getting host to express siRNAs (short inverted RNAs) that degrade (pathogen effector) mRNAs (messenger RNAs), meaning that you eliminate the protein (no mRNA = no protein).
      • group in Germany developed siRNAs that can be sprayed onto the leaf to degrade fungal mRNA
    • Pathogen-derived resistance
      • e.g. tobacco plant modified to express the TMV coat protein (coats RNA core) will be unaffected by TMV because it recognises its own coat protein and thinks the plant cells are already infected.
      • without this, the papaya industry in Hawaii wouldn’t exist because of papaya ringspot virus.