Viruses - RNA (-) sense Flashcards

1
Q

NEG sense RNA

shared replication MOA

A

POS sense RNA replication MOA

  • Viral RNA structure is complementary to hosts mRNA
  • NEG sense ssRNA viruses bring their own RNA polymerase (vs. POS sense that only need the hosts RNA polymerase) → forms POS sense RNA to act as mRNA
  • ALL RNA NEG (and all RNA POS) replicate in the cytoplasm EXCEPT Orthomyxovirus which replicates in the nucleus!!!
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2
Q

What are the 4 segmented NEG sense RNA viruses?

A

B.O.A.R. mnemonic

  1. Bunyavirus (3)
  2. Orthomyxovirus (8)
  3. Arenavirus (2)
  4. Reovirus (avg = 11; 9-12)

*** Segments are places where mutations can occur ***

(Antigenic drifts and shifts etc)

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3
Q

ALL the RNA viruses in sketchy videos replicate in the cytoplasm except?

A

Orthomyxovirus

Replicates in the nucleus!!!

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4
Q

ALL the RNA viruses in sketchy videos are SS except?

A

Reovirus

is DS!!!

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5
Q

Antigenic Drift vs. Antigenic Shift

A
  • Antigenic Drift

Point mutation in the viral genome → can lead to changes in molecules like hemagglutinin (HA) or neuraminidase (NA) → usually causes endemics (like seasonal flu)

  • Antigenic Shift

Segments (like HA or NA) are shared to form a new species → can lead to epidemics and pandemics (like swine flu antigenic shifted from humans, avian, and swine influenzas)

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6
Q

Otrhomyxovirus (Influenza)

lab tests

A

Night Shift at the Orthodontist’s

NEG** sense _S_S RNA**

Enveloped virus

8 Segments (B.O.A.R. mnemonic)

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7
Q

Otrhomyxovirus (Influenza)

3 main influenza viruses strains

*** Most common cause of the flu!!! ***

A

Night Shift at the Orthodontist’s

Strains A,B, and C

  • Influenza A causes epidemics and pandemics (Antigenic shift, and drift)
  • Influenza B causes endemics (Antigenic drift)
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8
Q

Otrhomyxovirus (Influenza)

signs and symptoms

A

Night Shift at the Orthodontist’s

  • Myalgia, fever, and non-productive cough for about 7 days
  • After it gets a little better can get pneumonia (common complication of influenza).
  • Pneumonia usually from Staph aureus, but can be from others and includes symptoms of pneumonia, fever, and productive cough.
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9
Q

Otrhomyxovirus (Influenza)

Source

A

Night Shift at the Orthodontist’s

Spread by respiratory droplets

Main flu season in U.S. is from DEC FEB

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10
Q

Otrhomyxovirus (Influenza)

MOA

A

Night Shift at the Orthodontist’s

  • Influenza hemagglutinin (HA) is a glycoprotein found on the surface of influenza virus.
  • HA binds to sialic acid on the cell membranes in the hosts URT and RBC’s.
  • Virus is endocytosed into the cell after binding
  • low pH activates the Matrix-2 (M2) protein channel to bring protons into the virion core
  • pH change allows HA to faciliate fusion of the viral envelope with the hosts endosome membrane
  • Virus uncoats, releasing the viruscontents, including its RNA genome, into the cell’s cytoplasm
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11
Q

Otrhomyxovirus (Influenza)

VF

A

Night Shift at the Orthodontist’s

  • Hemagglutinin (HA) antigens (H1, H2, H3… H18) define cell tropism (cells that can be affected)

Humans can make anti-HA antibodies to protect from the same strain in the future.

  • Neuraminidase (NA) cleaves the sialic acid inside the host cell allowing the virus to break free.
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12
Q

Otrhomyxovirus (Influenza)

Treatment

A

Night Shift at the Orthodontist’s

1) M2 protein inhibitors (Amantadine, Rimantadine)

  • Inhibits uncoating, but allows ↑ dopamine release in CNS
  • Older drugs, high resistance, only works against Inf. A

2) NA inhibitors (TamV/Tamiflu AKA Oseltamivir/Anamivir)
* Block release of the virus

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13
Q

Otrhomyxovirus (Influenza)

Vaccines

A

Night Shift at the Orthodontist’s

Get vaccine in October so have time to build an immune response before flu season (DEC → FEB)

1) Killed virus (IM)

  • 2 forms of killed vaccine. Trivalent (2A + 1B) and quadravalent (2A + 2B)
  • Children can get this vaccine after 6 months

2) Live vaccine (nasal spray)

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14
Q

Otrhomyxovirus (Influenza)

Influenza associated syndromes

A

Night Shift at the Orthodontist’s

  1. Pneumonia: (common complication) usually from Staph aureus, but can be from others and includes symptoms of pneumonia, fever, and productive cough.
  2. Reyes syndrome: Aspirin tx can cause encephalitis and hepatomegaly, liver failure, fever, rash, and vomiting by uncoupling (OX PHOS) mitochondrial proton gradient on ETC in the hepatic cell mitochondria.
  3. Guillen Barre syndrome: ascending paralysis with high protein in CSF and low WBS (albuminocytologic dissociation, an increase in the protein concentration of cerebrospinal fluid without an accompanying increase in the number of cells )
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15
Q

Paramyxovirus Family

lab tests

A

Paranormal Mixer

NEG** sense _S_S RNA**

Enveloped non-segmented virus

Anti-measles antibodies in the CSF (SSPE from Measles) or Warthin–Finkeldey cells in lymphoid tissue (for Measles/Rubeola)

Syncytia (cells merged together from RSV)

Steeple radiographic sign on xray (for Parainfluenza)

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16
Q

Paramyxovirus Family

Viruses in the Paramyxo family

A

Paranormal Mixer

*** Respiratory droplet transmission! ***

  • Measles (Rubeola) AKA 1st disease
  • Mumps
  • Respiratory Syncytial Virus (RSV)
  • Parainfluenza
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17
Q

Paramyxovirus Family

VF for each Paramyxovirus

(HA, NA, or Fusion proteins)

A

Paranormal Mixer

  • Measles (Rubeola): HA & Fusion (no NA)
  • Mumps: HA, NA, & Fusion
  • Respiratory Syncytial Virus (RSV): Fusion (only)
  • Parainfluenza: HA, NA, & Fusion
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18
Q

Measles (a Paramyxovirus)

signs and symptoms

Initial infection

AKA: Rubeola, 1st disease

A

Paranormal Mixer

  • Prodromal (early) symptoms (4 C’s!!!): include Cough, Conjunctivitis, Koplic signs (blue spots on red near molars on bucal mucosa), Coryza (runny/stuffy nose)
  • Fever of 104º F (40º C)
  • 1-2 days later, after Koplic spots, a late maculopapular rash starts on head and works down (like rubella), but is a confluence rash (vs. rubella which does not coalesce)
  • Complications including viral or bacterial pneumonia
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19
Q

Measles (a Paramyxovirus)

signs and symptoms

Persistent infection

AKA: Rubeola, 1st disease

A

Paranormal Mixer

Subacute sclerosing panencephalitis (SSPE)

AKA Dawson disease

  • Rare and chronic form of progressive brain inflammation
  • 1-15 years after initial Measles (Rubeola) infection
  • Symptoms include personality changes, seizures, myoclonus, ataxia, coma, and possibly death.
  • Buzzwords: “Measles as a child” or “Immigrants”
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20
Q

Measles (a Paramyxovirus)

VF

AKA: Rubeola, 1st disease

A

Paranormal Mixer

  1. Hemagglutinin (HA): causes RBC to stick together
  2. Fusion proteins: Causes multinucleated giant cells and red (eosinophilic) inclusion bodies → found in lymphoid tissue (AKA Warthin–Finkeldey cell)

*** NO Neuraminidase (NA)!!! ***

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21
Q

Measles (a Paramyxovirus)

To reduce mortality and complications you can give what vitamin?

AKA: Rubeola, 1st disease

A

Paranormal Mixer

Vitamin A

can reduce mortality and complications

22
Q

Measles & Mumps (Paramyxovirus family)

Vaccine

Measles AKA: Rubeola, 1st disease

A

Paranormal Mixer

  • MMR vaccine!
  • Live attenuated vaccine to induce humoral and cell mediated immunity.
  • Do NOT give to pregnant women.
  • HIV pt should only get the vaccine if CD4 count is > 200.
23
Q

Mumps (a Paramyxovirus)

signs and symptoms

A

Paranormal Mixer

  • Fever, muscle pain, headache, and feeling tired.
  • Usually followed by painful swelling of one or both parotid* salivary glands.
  • Orchitis* (inflammation of testicle tissue) unilaterally (more rarely bilaterally) → can lead to impaired fertility and testicular atrophy.
  • Meningitis*

* (Mumps replicates in the parotid glands, testes, and CNS)

24
Q

Mumps (a Paramyxovirus)

VF

A

Paranormal Mixer

  1. Hemagglutinin (HA)
  2. Fusion proteins
  3. Neuraminidase (NA)
25
**_Respiratory Syncytial Virus_ (RSV) (a **_Paramyxo_**virus)** signs and symptoms
**_Paranormal Mixer_** * **Attaches to _G protein_** to **infect respiratory** **epithelial** cells * **_Bronchiolitis_** and **_Pneumonia_** (**_most_ common cause** of these **in _infants_!!!**) * **Rhinitis** and **Pharyngitis**
26
**_Respiratory Syncytial Virus_ (RSV) (a **_Paramyxo_**virus)** VF
**_Paranormal Mixer_** * **_Fusion_ proteins** (NO HA or NA for RSV) **Fusion proteins** on the surface of the virus **cause** the **cell membranes** on **nearby giant** multinucleated **cells** **to merge** and **stick** together, **forming _syncytia_**.
27
**_Respiratory Syncytial Virus_ (RSV) (a **_Paramyxo_**virus)** Treatment
**_Paranormal Mixer_** * ****_Rib_**avirion** for **adults**.**\*** **\*** (**_Not_** _children_ or _pregnant_ women!!!) * **_Palivisumab_**, a **monoclonal antibody** (**Ig**_G_****) **against** the **_F protein_** of RSV, is used for **high risk children** and **premies**.
28
**_Parainfluenza_ (a **_Paramyxo_**virus)** signs and symptoms
**_Paranormal Mixer_** **_Croup_!** * AKA **_seal bark_ cough**, ****_in_**spiratory strider**, or **_L_**aryngo**_t_**racheo**_b_**ronchitis. * characterized by a **"barking" cough**, **stridor**(harsh or grating sound), **hoarseness**, and **difficulty breathing** which usually **worsens at night**. * **_Steeple_** radiographic sign **on xray** due to **narrowing** of the **_subglottic_ region** from **swelling**.
29
**_Parainfluenza_ (a **_Paramyxo_**virus)** VF
**_Paranormal Mixer_** Mainly affects **children!!!** (Adults usually get a severe "cold") 1. **Hemagglutinin** (**_HA_**) 2. **Fusion** proteins 3. **Neuraminidase** (**_NA_**)
30
**_Rabies_ (a** **_Rhabdo_****virus)** lab tests
**_Rabid Wrecking Yard_** **_Bullet**_ shaped _**NEG**_ sense _****S**_S **_R_**NA** **_Enveloped_** virus **_Helical_** nucleocapsid (like Filo and Arena) **_Negri bodies_** (**eosinophilic** cytoplasmic **inclusions**) **found in** **_hippocampus_** (**pyramidal** cells) or **_cerebellum_** (soma of **perkinje** cells) on **biopsy** or **autopsy**.
31
**_Rabies_ (a **_Rhabdo_**virus)** Source
**_Rabid Wrecking Yard_** **_Zoonotic_ virus** (**carried** by **animals** and **transmitted** to **humans**) In **U.S.** most common carrier is **_bats_** In **undeveloped countries _dogs_** also common carriers. **Squirrels**, **skunks**, **foxes**, and **raccoons** also carry.
32
**_Rabies_ (a **_Rhabdo_**virus)** MOA
**_Rabid Wrecking Yard_** * **_Glycoprotein_** on Rabies virus (**G-protein**) **binds** to **_Nicotinic ACh_ receptors** in the **_post_ synaptic membrane** in the **NMJ**. * **_Replicates_ in** the motor neurons **motor _end plates_**. * Rabies **moves _retrograde_** via peripheral nerves (1-3 mm per day) **to** the **_dorsal root_ ganglia** (can cause muscle spasms and tingling). * Spreads to **_brain_**.
33
**_Rabies_ (a **_Rhabdo_**virus)** signs and symptoms
**_Rabid Wrecking Yard_** * **Muscle spasms** and **tingling** * **_↑ salivary_ production** (once virus is in the salivary glands) & **excruciating _spasms_** of **muscles in throat** and **larynx** → **difficulty** in **swallowing** (**_dysphagia_**) → **_foaming_ of mouth** * **_Encephalopathy_** and **_high_ fever**
34
**_Rabies_ (a **_Rhabdo_**virus)** Vaccine / Antidote
**_Rabid Wrecking Yard_** 1. **_Antidote_** w/ **_passive_** **preformed antibodies** (Human rabies **Ig**_G_****) **prior to symptoms** (can be weeks to months before symptoms appear) **_AND_****...** 2. **_Killed vaccine_****\*** for **_active_ immunity**. **\*** (**_Killed vaccine_** tx is given even if just wake up with a bat in the room) **\***
35
**_Filovirus Family_** lab tests
**_Soccer Field'o Virus_** **\*\*\*** **_Marburg_** and **_Ebola_** **\*\*\*** **_NEG**_ sense _****S**_S **_R_**NA** **_Enveloped_** virus **_Helical_** nucleocapsid (like Rabdo and Arena)
36
**_Filovirus Family_** **Viruses** in the **Filo** family and their **source**
**_Soccer Field'o Virus_** * **_Marburg_** (usually **bat\*** **vector**) * **_Ebola_** (usually **monkey\* vector**) **In the U.S.** **_body fluids_** (especially **after death**) can **spread Filovirus**, so **_healthcare_ workers** are most **likely to get it**. **\*** Either bats or monkeys can be vectors for both, and bats "might" be the viral reservoir.
37
**_Filovirus Family_** signs and symptoms
**_Soccer Field'o Virus_** **\*\*\* _Marburg_** and **_Ebola_** **\*\*\*** * **_Hemorrhagic fever_** (**sweating**, **fever**, **_petechial_ rash**) * End **organ failure** * Severe **blood loss** → **_Shock_** * **Death**
38
**_Bunyavirus Family_** lab tests
**_Paul Bunyavirus_** **_NEG**_ sense _****S**_S **_R_**NA** **_Enveloped_** virus (**obtained from **_gol_**gi _bodies_** of host cells!!!) **_3_ _Circular_ Segments** (**B.O.A.R.** mnemonic)
39
**_Bunyavirus Family_** **Viruses** in the **Filo** family and their **source**
**_Paul Bunyavirus_** 1) **_Robovirus_:** transmitted through **rodents** (**_Deer mouse_** **urine** and **pellets**). (**Ro**bovirus like Arenavirus!) * **_Hantavirus_** 2) **_Arboviruses_:\*** transmitted through **_mosquito_ vector.** (Arbovirus like the togavirus!) * **_Rift Valley Fever_**, **_California Encephalitis_** (_aedes_ mosquito) **\* _All_ Bunyaviruses _except_** **Hanta**virus **are Arbo**viruses.
40
**_Hantavirus_** **(a **_Bunya_**virus)** signs and symptoms
**_Paul Bunyavirus_** * Causes **_pulmonary_ edema** via **_capillary_ leak** and **prerenal _azotemia_** (excess of nitrogen compounds in blood stream due to lack of blood flow to each kidney) * **_Hemorrhagic fever_**
41
**_Rift Valley Fever_** AND **_California Encephalitis_** **(**_Bunya_**viruses)** signs and symptoms
**_Paul Bunyavirus_** * Occurs mostly in **_children_** * **Myalgias** and **fever** * **Seizures** * **Encephalitis** (Usually not fatal, mostly causes neurological problems.)
42
**_Arenavirus Family_** lab tests
**_Welcome to the Arenavirus_** * **_NEG**_ sense _****S**_S **_R_**NA** * **_AMISENSE_!!!** can also encode POS sense * **_Enveloped_** virus * **Segmented**, but **only _2_** reassortable **segments** (**B.O.A.R.** mnemonic) * **_Helical_** nucleocapsid (like Rabdo and Filo) * Characteristic **_granular sandy_** **_outer_ capsid** on EM
43
**_Lymphocytic choriomeningitis virus_** **(an** **_Arena_****virus)** source AKA **_LCMV_**
**_Welcome to the Arenavirus_** Transmitted by **_rodents_**. (**Ro**bovirus like Bunyavirus!) The **common house _mouse_** (**Mus musculus**) is the **primary host**, but **other rodents** such as **hamsters** can transmit LCMV **if** they were **infected by** a **mouse**.
44
**_Lymphocytic choriomeningitis virus_** **(an** **_Arena_****virus)** signs and symptoms AKA **_LCMV_**
**_Welcome to the Arenavirus_** ****_Bi_**phasic _febrile_ illness** 1) _**Initial phase**, which may **last** as long as a **week**_: * **_Fever_**, malaise, lack of appetite, muscle aches, **headache**, nausea, and vomiting 2) _**Following** a **few days of recovery**, a **2nd phase** may occur_: * **Aseptic** **_meningitis_**, **encephalitis**, or meningoencephalitis. * also can cause **acute hydrocephalus**
45
**_Lymphocytic choriomeningitis virus_** **(an** **_Arena_****virus)** **Treatment** and **Inactivation** of LCM virus AKA **_LCMV_**
**_Welcome to the Arenavirus_** * **_Tx_** is **supportive care** for symptoms such as meningitis. **No chronic infection** has been described in humans, and after the acute phase of illness, the **virus is cleared from the body** * **_LCMV_** _can be_ **_inactivated_** By heating, low pH, irradiation, detergents etc.
46
**_Riovirus Family_** lab tests
**_A Race on the Rio_** * **_NEG**_ sense _****D**_S **_R_**NA** * **DS! DS! DS!** (**_Only_ **_R_**NA **_D_**S** in sketchy!) * **_NAKED_** virus * avg of **_11_** **Segments,** 9-12 (**B.O.A.R.** mnemonic)
47
**_Rotavirus_ (a **_Rio_**virus)** key facts
**_A Race on the Rio_** * **Fecal-oral** transmission * **Toxin mediated** (NSP4 **_entero_**toxin) **_secretory_ diarrhea**. * **NSP4 ↑ _Cl_- _permeability_** → **secretory** **diarrhea** that is **explosive** and **watery** (like norovirus, think **_Rota_**virus sounds like **_rota_**te propeller). * **Classic outbreaks** are in **_winter_!** * **_Children_** most at risk (**infants**, **daycare**, etc). * **#1 cause** of **severe diarrhea** in **young children!**
48
**_Colorado Tick Virus_ (a **_Rio_**virus)** key facts
**_A Race on the Rio_** * **_Colorado_ _Tick_ Virus** * Symptoms include **myalgia**, **fever**, and **vomiting**. * **NO** _rash_ **!!!** * **ddx** from _Rocky Mountain Spotted Fever_ due to **_lack_ of** a **_rash_** with **Colorado Tick Virus**.
49
**_Rotavirus_ (a **_Rio_**virus)** Treatment
**_A Race on the Rio_** **Supportive care** and **oral rehydration**
50
**_Rotavirus_ (a **_Rio_**virus)** Vaccine
**_A Race on the Rio_** * **_Live_ attenuated _oral_** vaccine * 1st dose given before 3 months of age due to: 1. **_Decreased_** **efficacy** 2. May **_increase_ risk** of **_intussusception_****\*** **\*** (stimulation and enlargement of **peyers patches** → which then act as **lead points** for the **intestine** to **_telescope_ into _itself_** → can cut off blood supply → and possible bowel perforation.