Viral Infection and HIV Flashcards

1
Q

What are the 3 viral enzymes involved in HIV viral replication

A

Reverse transcriptase, integrase, protease

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Describe the stages of HIV replication

A
  1. Surface proteins on HIV recognise specific receptor proteins on the surface of target cells, bind
  2. Fusion: HIV envelope and cell membrane fuse, allows HIV to enter the cell
  3. HIV replicates within the cell via translation and transcription, using reverse transcriptase
  4. Maturation of HIV cell - protease
  5. Budding of HIV cell - formation of the capsid and new HIV pushes out of host cell
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What does protease do?

A

Protease is toxic to cells, chops us viral precursor proteins which go on the make viral proteins

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

What does intergrase do?

A

It is a critical enzyme, which takes viral DNA and inserts it into the Host DNA, leading to irreversible infection

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What does reverse transcriptase do/which function does it not have?

A

Reverse transcriptase is used to produce complimentary DNA strands to produce viral proteins. It does not have a proof reading function

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Discuss the structure-activity relationship of RNA

A

RNA’s sugar has 3 chiral centres, The 2’ and 3’ OH groups in RNA make it less stable. The sugar part of the nucleotide is responsible for orientating the base and triphosphate into the correct position.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What is the purpose of the sugar in a nucleotide and can it be changed?

A

The sugar is the scaffold, it holds the triphosphate in the correct orientation. You can change this configuration, as do chain terminators which stops rRNA polymerisation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

What is the purpose of the base in a nucleic acid and can it be changed?

A

The base allows the nucleotide to make the complementary strand and bonds via hydrogen bonding, Changing this would lead to the wrong tautomer

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

what is the purpose of the triphosphate in a nucleic acid and can it be changed?

A

The triphosphate lacks an active site an cannot be changed as it is important for molecule recognition.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What changes can be made to sugars on nucelotides?

A

Remove the hydroxyl group, opportunities at the 2’ and 3’. Changing the sugar element is how nucleoside inhibitors work

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Describe the process of HIV replication with reference to reverse transcriptase

A
  1. Reverse transcriptase reads RNA and makes complementary DNA strand.
  2. RT cuts RNA out and leaves a single strand of viral DNA
    3) integrase inserts this viral DNA into the host cell DNA
    4) Host cell replicates this viral DNA as part of it’s Genome
    5) protease translates viral proteins
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Describe the structure/function relationship of reverse transcriptase

A

Reverse transcriptase’s structure can be described as a right hand with palm, fingers and thumb. The active site sits in the crease between the fingers and thumb. This active site has aspartic acid residues, holding Mg2+ ions, which are lewis acids and would pair with lewis bases. Reverse transcriptase also has an allosteric binding site.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

How are NRTIs able to bind to the active site of reverse transcriptase

A

o2 on the phosphate group of NRTIs are strong lewis bases and therefore can bind to the strong lewis acid Mg2+ in the active site of reverse transcriptase

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Do NRTIs need to be phosphorylated to be active? Why?

A

Yes, to gain the phosphate groups in order to appear like the Nucleotides and prevent chain elongation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

How do NRTIs work?

A

The 3 hydroxyl group on the sugar is replaced with an azido group, to prevent chain elongation. NRTIs are transported into the cell via soluble carrier transporters, are phosphorylated by kindases but it is not the correct sugar, and chain elongation is terminated, as there is no proof reading function

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

How can NRTIs have toxicity?

A

The phosphorylation inside cells can have toxic effects due to it’s effect on mitochondria

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

How are NRTIs used?

A

As part of Highly Actrive Antiretroviral Therapy (HAART).
2 nucleoside reverse transcriptase inhibitors are given with an NNRTI
2X NRTIs + boosted protease inhibitor

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

When is therapy with 2x rt inhibitors + protease inhibitors saved for?

A

Resistance to 1st line regimens and for patients that wish to become pregnant or have psychiatric illness

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

What are some key points to remember about tenofovir?

A

It doesnt inhibit mitochondrial DNA polymerases but there is no way to administer it orally

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

What does NNRTI stand for?

A

Non nucleoside reverse transcriptase inhibitor

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

Discuss common physiochemical propertires of NNRTIs

A

High logP in order to enable binding, high chemical diversity

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

Where do NNRTI’s bind?

A

At the allosteric binding site

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

How do NNRTIs work?

A

They bind to the allosteric binding site on reverse transcriptase, into the hydrophobic binding pocket. This binding leads to a conformational change in the aspartic acid residues in the active site, binding is inhibited. There is a change in the thumb position, which leads to decreased thumb mobility, and slowing or prevention of the primer strand

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

Discuss the key chemical aspects of NNRTI therapy

A

Resistance - as they bind to non-essential site on RT
Used as part of the HAART regimen to reduce risk of resistance
Very long t1/2
High logP:2.3 which gives it just the right amount of water solubility and hydrophobicity

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
Q

Examples of NRTIs

A

Abacavir
Emtricitabine
Tenofovir

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
26
Q

Discuss the pharmacodynamic and physiochemical properties of Nevirapine (NRTI)

A
pKa 2.8
strong base
poor water solubility
High CSF/CNS penetration
Efavirenz preffered NNRTI in pregnant women
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
27
Q

Discuss the pharmacodynamic and physiochemical properties of delvaridine (NRTI)

A
pKa 4.5, weak base
poorly water soluble at physiological pH
low CNS penetration
Teratogenic in rats
hepatic metabolism
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
28
Q

Discuss the pharmacodynamic and physiochemical properties of etravine (NRTI)

A

pKa 3.5, weak base
insoluble in water
highly lipid soluble
taken with food to increase gastric residence time
elimination in faeces
limited cross-resistance with other NNRTIs

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
29
Q

Discuss the pharmacodynamic and physiochemical properties of Efavirenz (NRTI)

A
practically insoluble
high membrane permeability (40-50% bioavailability)
hepatic metabolism
Induces CYP enzymes
Effects in CNS
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
30
Q

Discuss the pharmacodynamic and physiochemical properties of doravine (NRTI)

A

Pka 3.5
quickly absorbed after oral administration
pharmacodynamics not affected by age/gender/ethnicity
metabolised by cyp3a4

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
31
Q

Discuss the pharmacodynamic and physiochemical properties of ripilvirine (NRTI)

A
pka 5.6 - weak base
poorly water soluble
administered with food
metabolised by cyp3a4
lower incidence of cns effects
not recommended in breast feeding women
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
32
Q

Discuss the pharmacodynamic and physiochemical properties of elsufarazine (NRTI)

A

oral formulation
t 1/2 9 days, once weekly dosing?
active against isolates from NNRTI experienced patients
higher barrier to genetic resistance

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
33
Q

In simple terms, what do NRTIs do?

A

Chain Terminators

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
34
Q

In simple terms, what do NNRTIs do?

A

Bind to reverse transcriptase and denatures it

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
35
Q

Which drugs block entry of HIV?

A

Fusion inhibitors - block gp41 (fuzeon)
Post attachment inhibitors - (ibalizumab, temsavir)
Entry inhibitors CCR5 co recepotor antagonists (maraviroc)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
36
Q

What is membrane fusion?

A

The fusion of enveloped vriuses and host cell membranes. It is mediated by viral glycopeptides.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
37
Q

How does membrane fusion occur?

A
  1. Binding of gp120 to target cell surface on CD4 changes the confirmation of GP120, enabling the protein to bind to another receptor on the cell surface (CCR5/CXCR4)
  2. binding of GP120 leads to a confirmational change in GP120 which exposes GP41 and allows it to insert itself into the membrane, which leads to fusion of the two membranes
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
38
Q

What is the function of gp41?

A

Gp41 drives final fusion step - a transmembrane protein

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
39
Q

What is the function of gp120?

A

It is a surface protein responsible for host cell recognition. Gets the HIV particle into the correct place

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
40
Q

What does fuzeon do?

A

Binds to gp41 and blocks the fusion of membranes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
41
Q

Discuss the clinical use of fuzeon

A
  • fuzeon is a polypeptide not orally absorbed
  • salvage therapy
  • administered s/c
  • hypersensitivity reactions are common
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
42
Q

What is albivuirtide?

A
  • fusion inhibitor
  • links to serum albumin which increases t 1/2 whilst maintaining activity
  • chemically modified peptide derived from HIV-1 protein GP41
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
43
Q

How do drugs inhibit HIV entry?

A

Virus attaches to the cell via very few, specific high affinity molecular interactions, mediated by viral glycoproteins, blocking these (gp120, gp41)
Inhibit co-receptors CXCR4 and ccr5

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
44
Q

Which drugs act on post-attachment?

A

Idalizumab

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
45
Q

What is idalizumab used for?

A

For treatment of heavily experienced patients with multi-drug resistance. Antibody binds to CD4 receptor. Requires loading dose

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
46
Q

Which drug acts on the CCR5 co-receptor? How does it work?

A

Maravirol. The only drug in it’s class. Binds to allosteric binding site on CCR5 receptor, causes a conformational change and disrupts binding of the virus

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
47
Q

What is integrase?

A

An essential viral enzyme. Binds to doubled stranded viral DNA generated by reverse transcriptase and mediates it’s integration into the cellular genome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
48
Q

What is integration?

A

The final step before irreversible and productive HIV infection of the target cell

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
49
Q

What is an active reservoir?

A

Untreated person

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
50
Q

What is a latent reservoir?

A

Virus lies dormant

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
51
Q

Describe the structure of integrase

A

It has 3 functional domains: N-terminal, catalytic core and the c-terminal

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
52
Q

Why is LEDGF-p75 Significant?

A

It manages chromatin. If you disrupt this, defective viral proteins are produced

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
53
Q

How does intergrase interact with LEDGF-P75?

A

Intergrased and LEDGF P75 bind and form a tetramer intasome.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
54
Q

What is the N-terminal domain and what is its purpose?

A

Domain that is part of integrase structure, contains a zinc ion which stabilises the enzyme and is critical for it’s function

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
55
Q

What is the catalytic core domain and what is its purpose?

A

Part of the structure of integrase and binds to DNA non-specifically

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
56
Q

What is the C-terminal domain and what is its purpose?

A

Part of integrase’s structure. Contains 3 negatively charged amino acids, which coordinate the mg2+ divalent metal ions, which is essential for catalysing the reactions that lead to 3’ strand transfer of DNA

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
57
Q

Describe the process of strand transfer and integrase’s involvement

A

3’ processing occurs in the cytoplasm. Integrase cuts DNA and produces sticky ends, preparing DNA to be inserted into the nucleus of the host cell. Integrase cuts cellular DNA and inserts viral DNA, leading to permanent infection

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
58
Q

What is the stable synaptic complex?

A

A tetramer of intasome engages two viral dna forming the stable synaptic complex

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
59
Q

What happens to form the CDC?

A

3’ processing of the intasome and 2 vdna. Liable phosphodiester bond is cleaved, mg2+ is key for activity

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
60
Q

What is the cleaved donor complex?

A

It is partly in the cytpolasm and the nucleus of the host cell

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
61
Q

What happens after the CDC is formed?

A

tDNA binding to the CDC forms the TARGET CAPTURE COMPLEX

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
62
Q

What happens and is formed after the TCC?

A

Cleavage of the phosphodiester bond, 3’ processing and the joining of v DNA of to cellular DNA

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
63
Q

What is the strand transfer complex?

A

Where bonds form between vDNA and cellular DNA

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
64
Q

How does inhibition of strand transfer occur?

A

All integrase inhibitors work by blocking this reaction. They all chelate to MG2+ ions on integrase via a lewis acid and base reaction

65
Q

Describe 1st and 2nd generation intergrase inhibitors and give examples

A

1st generation - have oxygen atoms which are lewis basic centres, mg2+ in the integrase active site are lewis acid centres, chelation occurs and strand transfer is shut down.
2nd generation - are core planar with locked arrangement. They have an aromatic ring with halogens and are hydrophobic. They have high residence times in the active site, leads to high barrier to resistance

66
Q

What interaction should be rememebred for integrase inhibitors?

A

they are metal chelators and so careful caution should be taken when they are co-administered with antacids and milk

67
Q

What is dual inhibitor therapy?

A

A co-formulation of dolutegravir (integrase inhibitor) and rilpivirine (NNRTI) Juluca brand

68
Q

Discuss the pros and cons of dual inhibitor therapy

A

Pros: decreased cost, decreased drug interactions, increased adherence, decreased toxicity
cons: increased virological failure, increased reisstance, viral escape at compartments

69
Q

Give an example of a dual inhibitor

A

Dual inhibitor example - Juluca dolutegravir and riplivirine

Cabuneva - carbotegravir and rilpivirine. 12 doses/year

70
Q

What is protease?

A

An enzyme that plays a crucial role in the viral replicative cycle and is essential for the generation of mature virus

71
Q

How does protease play a part in viral replication?

A

Acts as chemical scissers to cleave polypeptides into functional proteins within the process of maturation

72
Q

What is maturation? Describe the stages of replication that lead to maturation

A

The creation of new viral particles
Upstream, Reverse transcriptase has read RNA and created double stranded DNA, which has been inserted into the host cell where transcription of the new mRNA has occurred and translation into new viral proteins. Protease cleaves GagPol fusion proteins to produce new functional proteins

73
Q

What are the two types of proteases?

A

Peptidases and proteinases

74
Q

What do peptidases do?

A

Cleave single amino acid from the end of the peptide chain

75
Q

What do proteinases do?

A

Cleave peptide bonds within a substrate

76
Q

What is the structure of HIV protease?

A

A homodimer (2 identical polypeptide chains with one active site, formed by 2 key amino acids from each peptide)

77
Q

Describe the quaternary structure of HIV protease

A

The quaternary structure is made up of 3 separate domains: dimerisation, core, flap

78
Q

What is the core domain?

A

A highly conserved sequence of amino acids. Aspartate 25 is the key enzyme for the function. This domain is useful in dimer stabilisation as well as catalytic site stability

79
Q

What is the flap domain?

A

Flexible flaps that enclose the active site and provide important ligand binding interactions. Closes the active site

80
Q

What is the dimerization domain

A

site crucial for dimer formation

81
Q

How does protease work?

A

Aspartate 25 on each dimer and a water molecule induce acid-base hydrolysis. Water molecule is activated and generates OH-.
Nucleophile attacks the carbonyl group on the peptide which has natural polarity.
O- electrophile removes proton, bond is cleaved and produces an amine and a caboxylic acid

82
Q

How do isosteres inhibit the action of protease

A

Isosteres fit into the active site of HIV protease but are non cleavable, so cannot be released. They do not have a leaving group

83
Q

What are the key features of drugs to inhibit protease

A

NO OH group

OH on different carbons

84
Q

What are the key features of drugs to inhibit protease

A

NO OH group

OH on different carbons

85
Q

How does Tipranavir work?

A

Used for highly resistant patients with resistance to protease inhibitors.
Contains a dihydropyrone ring, which fits into the active site and mirrors the transition state in order to prevent water from entering the active site

86
Q

Give examples of protease inhibitors

A

ritinovir

saquinavir

87
Q

Discuss resistance with relation to protease inhibitors

A

Cross resistance between protease inhibitors is observed, so it would be pointless to switch.

88
Q

What are key interactions with protease inhibitors?

A

Interaction with CYP450 metabolism - can increase plasma conc of drugs metabolised in this way. Caution with ketoconazol, rifabutin, warfarin, st john’s wort

89
Q

What is ‘boosting?

A

Co administering protease inhibitors with ritonnavir as it reduces the metabolism of the protease inhibitor

90
Q

Which drug Is usually used for boosting?

A

Ritonavir

91
Q

How does boosting work?

A

Ritonavir inhibits CYP450 which leads to increased bioavailability of other protease inhibitors

92
Q

Discuss metabolism, absorption and distribution with relation to boosting

A

M - main metabolic pathways involve CYP450, with the exception of indinavir
Food - important effect on the absorption of agents eg high fat meal can increase absorption of saquinavir and rifinavir, but reduces absorption of indinavir and amprenavir

93
Q

How is cobicistat used for boosting?

A

It is a booster with no antiviral activity and is highly selective for CYP13A4.

94
Q

Are there any interactions with cobocistat

A

ca2+ channel blockers. beta blockers, drugs for erectile dysfunction, statins

95
Q

What are the 3 main routes of transmission for HIV?

A

sex, needle stick injury, via foetus, contaminated blood products. Purely sexual fluids and blood

96
Q

How have needle exchanges impacted the transmission of HIV?

A

decreased transmission by lowering risk of sharing contaminated products

97
Q

What is POCT? Describe

A

Point of care testing. Highly accurate test for HIV 6 weeks after expsure. It is a HIV antibody test, and can be taken 4-8 weeks after exposure. it is a finger prick/mouth swab and results are received within 20-30 minutes

98
Q

What is the 4th generation assay? Describe

A

HIv antibody test, a blood sample and can take up to 7 days

99
Q

How is HIV diagnosed?

A

POCT/4th generation assay test.

POCT is less sensitive and positive results are sent away for a 4th gen test

100
Q

Which markers are used to detect HIV?

A

CD4 Count, viral load

101
Q

What is the CD4 count?

A

The number of CD4+ T cells in 1mm3 of blood. Represents the how well the immune system is functioning

102
Q

What does CD4% represent?

A

The proportion of CD4+ cells in relation to other white blood cells

103
Q

What is the treatment aim with regards to CD4?

A

Increase CD4 count

104
Q

What level of CD4 cells is considered to put the patient at risk of opportunistic infection?

A

below 350/200

105
Q

What is viral load?

A

The number of copies of HIV in the blood

106
Q

What is the treatment aim with regards to viral load?

A

Decrease viral load to less than 20/ml

107
Q

Why should treatment not be stopped even when the viral load is decreased?

A

Because the viral load may decrease but the virus can remain latent in the body, so do not stop treatment

108
Q

Describe the course of HIV infections

A

The primary infection occurs and the CD4 count decreases rapidly, as HIV copies increase. after 6 weeks or so, HIV copies decrease and the patient enters a period of clinical latency which can last between 6-8 years, as the cd4 count slowly declines. As cd4 declines, the patient becomes increasingly at risk of opportunistic infections. CD4 count full decline, patient dies

109
Q

What is a common symptom noticed in the first 1-6 weeks of HIV?

A

weight loss

110
Q

what is clinical latency?

A

When the patient has a detectable viral load but is well and not presenting with any symptoms. These patients can still transmit HIV

111
Q

What is acute infection/seroconversion and when does it usually occur? Describe the symptoms

A

An infection that occurs 1-6 weeks after infection. Patient has a high viral load and unaware of HIV infection. Non specific, flu like symptoms that clear in 1-4 weeks

112
Q

What is AIDS? How is it diagnosed?

A

Advanced, immunodeficiency syndrome. Diagnosed in people with a low CD4 count and aids definiing illness. AIDS defining illness - opportunistic infections

113
Q

What is the most common aids defining illness?

A

Pneumocystis jirovecci infection

114
Q

How do you prevent pcp? When do you withdraw it?

A

Co-trimoxazole prophylaxis until CD4 count has risen and remains high

115
Q

How do you treat severe pcp?

A

Co trimoxazole IV/PO

116
Q

How do you treat mild to moderate pcp?

A

Oral co-trimoxazole

117
Q

What is MAC? How do you prevent it?

A

Mycobacterium avium complex. Presents as fever, night sweats, fatigue, weight loss, anorexia and diarrhoea

118
Q

What is mycobacterial TB? Why do you have to be cautious when treating it with regards to HIV medication?

A

HIV patients are 20-40x more likely to get TB infection.

There is drug-drug interactions with rifampicin as it is an enzyme inducer so may impact the plasma levels of HIV drugs

119
Q

What malignancies are associated with HIV?

A
  • unusual skin cancers
  • non hodgkins lymphoma
  • cerebral lymphoma
  • cervical cancer
120
Q

What are the drug targets for HIV therapy?

A

Attachment - CCR5 inhibitors
Reverse transcriptase - NRTI/NNRTI
Integration - integrase inhibitors
Budding, release and maturation - protease inhibitors

121
Q

How do attachment inhibitors work? Give examples

A

They attach to surface glycoproteins on HIV cells, to prevent attachment to host cells. EXAMPLE: temsavir CCR5 co receptor antagonist
fusion inhibitors - bind to gp41

122
Q

How do reverse transcriptase inhibitors work? Describe the two sub types

A

NRTI - binds to the active site on RT, blocks binding of DNA, prevents chain elongation as the incorrect sugar is present. They are chain terminators.
NNRTI - binds to allosteric binding site which cause a conformational change in the active site and prevents binding

123
Q

Give NRTIs example

A

Tenofovir (TDF/TAF) emtricitabine, abacavir, lemividine

124
Q

Give examples of NNRTIs

A

Rilpivirine, nevirapine, efavirenz, etravine

125
Q

How do integration inhibitors work?

A

Integrase inhibitors block the strand transfer reaction. They chelate to Mg2+ ions on integrase enzymes which leads to an acid bace reaction and strand transfer is shut down

126
Q

Give examples of integrase inhibitors

A

dolutegravir, elvitegravir, cotegravir, raltegravir

127
Q

How do budding and maturation inhibitors work?

A

Protease inhibitors, fit into the active site of HIV protease and mimic the transition state betwen HIV protease and DNA peptide chains. Unlike peptide chains they have no leaving group, therefore the reaction is locked in the transition state and the two functional proteins cannot be produced

128
Q

Give examples of protease inhibitors

A

Atazanavir/ darunavir + cobicistat or ritonavir

129
Q

What are the goals of HIV treatment? Clinical/immunological/viral/epidemiological goals

A

Clinical - extend life expectancy and improve quality of life
Immunological - preserve and restore CD4 cell count
virological - viral load undetectable within 4-6 months
epedemiological - prevent transmission

130
Q

When should treatment be started for HIV? Describe the four main scenarios

A

Primary infection, chronic infection, presentation of AIDs or a major infection, prevention of transmission

131
Q

How should HIV treatment be initiated following primary infection?

A

Offer treatment early in infection, treatment should only be started when the patient is ready, but should be recommended ASAP if:
- patient has neurological symptoms, any AIDS defining illness, CD4 count persistently less than 350 cells

132
Q

How should HIV treatment be initiated following chronic infection?

A
  • Start when the patient is ready
133
Q

How should HIV treatment be initiated following aids/major infection presentation?

A

Start treatment within 2 weeks of antimicrobials if patient presents with AIDS defining illness/serious bacterial infection with CD4 less than 200

134
Q

What are the main factors to consider before starting HIV treatment?

A
CD4 cell count
viral load
pregnant 
patients likely adherence
partners where one partner has high viral load
transmission risk
comorbidities 
CVD risk
135
Q

Discuss the pros and cons of early treatment for HIV

A

PROS: increased immunological recovery, reduced transmission, reduced disease progression/morbidity, reassurance to patient
CONS: poor preparedness leading to poor adherence and drug resistance, cost, long term side effects/renal impairments

136
Q

What is IRIS?

A

Immune reconstitution inflammatory syndrome. Patients with dampened immune syndrome and chronic infection can cause large antiinflammatory response if you start antbacterial/antiretrovirals together. Start antimicrobials first then add ART and steroids

137
Q

Discuss CVD risk with relation to HIV

A

HIV is a CV risk in itself and adding drug therapy can also increase the risk. An extra medication to manage this wouldnt make much difference. Be aware of drug interactions

138
Q

What are the 5 classes of antiretroviral drugs? Give examples of each

A

NRTI - tenofovir, emtricitabine, abacavir, lamivudine
NNRTI - efavrienz, riplivirine, nevirapine
Protease inhibitors - atazanavir, darunavir, ritonavir
Integrase inhibitors - dolutegravir, elvitegravir, raltegravir
entry inhibitos - CCR5 inhibitors, GP41 inhibitors. Maraviroc

139
Q

What is the NRTI backbone? What does it do?

A

2 NRTIs. Block addition of nucleosides to DNA chain during retrotranscription, they structurally resemble nucleosides but act to terminate the building of the chain

140
Q

What drugs is Truvada made up of? Discusss the pros and cons

A

Tenofovir TDF and emtricitabine
Pros: preferred first line, good viral end points
Cons: cautioned in stage 3-5 CKD. Have long term effects on bone density

141
Q

What drugs is descovy made up of? Discuss the pros and cons

A

Tenofovir TAF and emtricitabine.
PROS: preferred line, equivalent to truvada. Has some benefit in renal/bone disease
CONS: expensive, so only given in confirmed renal disease, lack of experience

142
Q

What drugs is kivexa made up of? Discuss the pros and cons

A

Abacavir and lamuvidine
PROS: alternative drug which can be used ig the viral load is less than 100,000. Has favourable mineral bone density, cost
CONS: cautioned in CVD

143
Q

What are key points for abacavir?

A
  • 8% people are allergic

- caution in patients with significant CVD risk

144
Q

What are the 2 tenofovir salts?

A

TDF and TAF

145
Q

What is TDF?

A

A salt of tenofovir, activated in the plasma

146
Q

What is TAF?

A

A salt of tenofovir, which is activated intracellularly, lower plasma concentration and fewer side effects

147
Q

List the 3 third agents for HIV treatment

A

Protease inhibitors, integrase inhibitors, NNRTIs

148
Q

discuss the pros and cons of protease inhibitors

A

PROS - high barrier to resistance, high efficacy. Can be so effective in some patients that they can be used alone
CONS - drug interactions, cost, side effects, redistribute fat from stomach to the back

149
Q

discuss the pros and cons of integrase inhibitors

A

PROS: Fewer side effects, fewer drug-drug interactions, rapid virological response
CONS: cost, low barrier to resistance

150
Q

discuss the pros and cons of NNRTIS

A

PROS: previous efficacy as first line, relatively few side effects
CONS: efavirenz C/I in psychiatric illness. Ripilivirine can only be used in lower viral loads
drug-drug interactions and resistance can occur

151
Q

What drug factors influence ARV choice?

A

side effects/toxicity, drug resistance, previous treatments and pill burden, storage, potential for drug-drug interactions

152
Q

Which patient factors influence ARV choice?

A

renal function, liver function, CV risk, pregnancy, pill burden, psychiatric/mental illness, experienced or naive, adherence, choice, viral load

153
Q

What causes treatment failure?

A

resistance, poor adherence, drug-drug interactions. Presents as sustained viral load rebound that has been detectable for a while

154
Q

Discuss adherence and resistance related to HIV infection

A

Very high levels of adherence correlates to succesful treatment. Poor adherence leads to failure, disease progression, transmission of resistant virus, increased healthcare costs. Patients should miss less than one dose per month. Reverse transcriptase is prone to errors which leads to drug resistant mutations

155
Q

What is wild type HIV?

A

HIV without genetic mutations that confer resistance and will always outgrow other types of HIV.

156
Q

Discuss Drug-drug interactions with ARV (metabolism, transporter proteins, absorption, renal clearance?

A

Absorption - chelation of integrase with calcium/iron supplements
Changes to gastric PH can reduce absorption, Alanzavir and ripilivirne contraindicated with PPI
Transporter proteins - shunt drugs in and out
Metabolism - inhibition or induction of enzymes. CYP450 problem with protease inhibitors or NNRTIs
Renal clearance - drugs causing renal insufficiency. Protease inhibitors reduce the cleaners of TAD

157
Q

List Potential comorbidities with potential interactions with HIV

A

diabetes, hyperlipidaemia, neuro-psychiatric illness, malignancies, hypertension, hepatitis, transplants, TB, opioid dependance, other infections

158
Q

Why are some HIV drugs taken with food?

A

To reduce the side effects or to increase absorption of lipid soluble drugs by lowering gastric pH and causing delayed stomach emptying e.g ripilivirine absorption is lower on fasted stomach, efavirenz is taken on an empty stomach, truvada take with food