Vector Sampling Flashcards
Sensitivity
Probability of detecting at least one vector in a site that is actually infested (e.g. vectors can be elusive)
Specificity
Probability of detecting no vectors in a site that is actually not infested (e.g. taxonomic error)
WHO policy of reporting naive indices of vector species presence (Calculation)
No. of locations where vectors are found/No. of locations checked for vectors
WHO policy of reporting naive indices of vector species presence (Calculation)
No. of locations where vectors are found/No. of locations checked for vectors
True positive (Vector searches)
At least 1 of the searchers found a vector
Likelihood-based methods for estimating site occupancy rates
Measure covariates (search round, type of ecotope, ecotope size class) Assess relationship between imperfect detection and covariates Produce vector-occupancy models incl full range of covariates Assess ‘best’ model using complexity-precision trade-off (AIC)
Types of spatial distribution
Random (Poisson)
Clustered
Regular
Methods of assessing vector clusters
Ripley’s k-function (Point data)
Moran’s I (Area Data)
Global cluster statistics
Inform whether or not vectors are significantly clustered
Ripley’s k-function
Number of pairs of points separated by given distance
k-function ratios incorporating underlying population
Significance testing using MC simulation
Moran’s I
Correlation coefficient for values in neighbouring units
Weighted to account for geographical proximity
K value - Ripley’s K
When the observed K has a higher value than the confidence intervals surrounding the expected K, this implies there is greater than expected clustering in the kdr frequency values at that spatial scale
Spatial scan statistic (SaTScan)
Point and area (centroid) data
Detects location (and time) of spatial (spatiotemporal) cluster(s)
Moving circular window – likelihood ratio test to determine if rate inside is higher/lower than rate outside the circle
For space-time cluster, uses a cylinder
Selects most likely cluster
Monte Carlo simulation to test significance
Many applications! Freeware, accounts for multiple testing, statistically robust