Unit 3: Nucleic Acids And The Encoding Of Biological Information Flashcards
Deoxyribonucleic Acid (DNA)
A linear polymer of four subunits
Double Helix
Two strands coiled around each other to form a spiral staircase
Genetic Information
Information in DNA
Genes
How genetic information is organized
Transformation
The conversion of cells from one form into another
Replication
Allows the genetic information from one DNA molecule to be copied into that of another DNA molecule
Mutation
A change in the genetic information in DNA
Ribonucleic Acid (RNA)
Another type of linear polymer that DNA acts through
Central Dogma
The flow of information from DNA to RNA to protein
Transcription
The genetic information in a molecule of DNA is used to generate a molecule of RNA
Template
The genetic information in a molecule of DNA that is used to generate a molecule of RNA
Gene Expression
The production of a functional gene product
Translation
A molecule of RNA is used as a code for the sequence of amino acids in a protein
Nucleotides
The subunits of DNA
Sugar
The simplest carbohydrate molecule
Base
A nitrogen-contending compound that makes up part of a nucleotide
Phosphate Group
A chemical group consisting of a phosphorus atom bonded to four oxygen atoms
Deoxyribose
The sugar in DNA
Purines
Bases that have a double-ring structure
Adenine (A)
A purine base
Guanine (G)
A purine base
Pyrimidines
Bases with a single-ring structure
Thymine (T)
A pyrimidine base
Cytosine (C)
A pyrimidine base
Nucleoside
The combination of sugar and base
Phosphodiester Bond
A C-O-P-O-C linkage which is a relatively stable bond they can withstand stress like heat and substantial changes in pH that would break weaker bonds.
Polarity
One end of the molecule differs from the other
5’ End
The end of a nucleic acid containing a a free 5’ phosphate group
3’ End
The end of a nucleic acid that carries a free 3’ hydroxyl group
Major Groove
The larger of the two uneven grooves on the outside of a DNA duplex
Minor Groove
The smaller of the two uneven grooves on the outside of a DNA duplex
Antiparallel
The individual DNA strands in the double helix run in opposite directions
Complementary
Bases that form specific pairs, A with T and G with C
Base Stacking
A stabilizing force that occurs because the nonpolar, flat surfaces of the bases tend to group away from water molecules and hence stack on top of one another as tightly as possible
Supercoils
The double-stranded DNA molecules in prokaryotic cells are circular and form supercoils in which the circular molecule coils upon itself
Topoisomerases
Enzymes that cleave, partially unwind, and reattach a DNA strand, which putts strain on the DNA double helix, causing it to supercoil
Chromosome
Individual DNA molecules in the nucleus
30-nm Chromatin Fibre
Double-stranded DNA molecules in eukaryotes that are packaged with histones
10-nm Chromatin Fibre
A relaxed 30-nm chromatin fibre in which transcription is taking place
Chromatin
Chromatin fibres of either dimension
Nucleosome
The 10-nm chromatin fibre that is composed of a bead like repeating unit
Histone
Proteins rich in the positively charged amino acids lysine and arginine, which much enables them to form ionic bonds with the negatively charged sugar-phosphate backbone of DNA
Evolutionarily Conserved
Conserved DNA that are similar in sequence from one organism to the next
Ribosomes
Particles in the cytoplasm where proteins are synthesized
RNA World Hypothesis
The hypothesis that RNA, not DNA, was the original information-storage molecule in the earliest forms of life on Earth.
Ribose
The sugar in RNA that contains a hydroxyl group on the 2’ carbon
Uracil
The base in RNA that replaces thymine found in DNA
RNA Transcript
A DNA strand that is used as a template or pattern for the synthesis of an RNA transcript
Nontemplate Strand
The DNA template that is not transcribed
Promoters
Regions of a few hundred base pairs where RNA polymerase and associated proteins bind to the DNA duplex
TATA Box
A sequence similar to 5’-TATAAA-3’ in eukaryotic and archaea promoters
Terminator
A sequence in which transcription stops
Housekeeping Genes
Genes whose products are needed at all times in all cells, where transcription takes place continually
Sigma Factor
A protein which associates with RNA polymerase and facilitates its binding to specific promoters
General Transcription Factors
The combined action of at least six proteins that assemble at the promotor of a gene to attract RNA polymerase
Pol II
The RNA polymerase complex responsible for transcription of protein coding genes
Transcriptional Activator Protein
Proteins which bind to enhancers
Enhancer
A specific DNA sequence necessary for transcription
Mediator Complex
A complex of proteins that interacts with the Pol II complex and allows transcription to begin
High-Energy Phosphate Bond
The bond connecting the innermost phosphate to the next, which when cleaved provides the energy to drive the reaction that creates the phosphodiester bond attaching the incoming nucleoside to the 3’ end of the growing chain.
Primary Transcript
The RNA transcript that comes off the template DNA strand that contains the genetic information of the gene that was transcribed
Messenger RNA (mRNA)
The RNA molecule that combines with the ribosome to direct protein synthesis
Polycistronic mRNA
Molecules of mRNA that code for multiple proteins
RNA Processing
The process in which the primary transcript gets converted into the finished mRNA, which can then be translated by the ribosome
5’ Cap
The addition of a modified nucleotide called 7-methylguanosine to the primary transcript
Polyadenylation
The addition of a string of about 250 consecutive A-bearing ribonucleotides to the 3’ end, forming a poly(A) tail.
Poly(A) Tail
A long string of A-bearing ribonucleotides
Introns
The excision of certain sequences from the transcript
Exons
The remaining sequences on the transcript after RNA splicing
RNA Splicing
The process of intron removal, which is catalyzed by a complex of RNA and spliceosome
Spliceosome
A protein involved in RNA splicing
Lariat
A loop and tail that forms when the spliceosome cuts on end of the intron and connects it to a nucleotide near the other
Alternative Splicing
The process in which primary transcripts of the same gene can be spliced in different ways to yield different mRNA’s and therefore different protein products.
Ribosomal RNA (rRNA)
Found in all ribosomes that aid in translation
Transfer RNA (tRNA)
Carries individual amino acids for use in translation
Small Nuclear RNA (snRNA)
Found in eukaryotes involved in splicing, polyadenylation, and other processes in the nucleus
microRNA (miRNA)
Small, regulatory RNA molecules that can inhibit translation
Small Interfering RNA (siRNA)
Causes destruction of an RNA transcript