TOPIC A/2: Nitrogen metabolism Flashcards

1
Q

Which bases are purines

A

adenine and guanine

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2
Q

What bases are pyrimidines

A

thymine, cytosine and uracil

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3
Q

What are the 2 pathways of nucleotide synthesis

A

De Novo pathway

Salvage pathway

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4
Q

Where does nucleotide synthesis occur

A

predominantly in the liver

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5
Q

outline the de novo pathway

A

Starts with a precursor such as

amino acids
ribose 5-phosphate
CO2 and NH3

Builds nucleotide form basic molecules

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6
Q

why are nucleotides important in a cell

A

make up DNA/RNA

energy carriers (e.g. ATP)

Components of cofactors and activated intermediates

Signalling molecules (e.g. cAMP)

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7
Q

Outline the salvage pathway

A

Starts with bases available through degradation of other nucleic acids

recycles bases

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8
Q

Outline purine build up

A

PRPP to IMP then GMP and AMP

GMP and AMP inhibit enzymes acting on IMP

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9
Q

Outline purine break down

A

produces uric acid

salvage pathway can produce GMP form guanine or iMP form hypoxanthine

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10
Q

Outline gout

A

Defective enzymes of purine degradation

high uric acid and arthritis

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11
Q

Outline severe combine immunodeficiency (SCID)

A

Adeonsine deaminase deficiency

dATP not converted to inosine. inhibits ribnucleotide reductase

no dNTP produced, DNA cannot be made

T and B cells with high DNA synthesis cannot replicate properly causing immune deficiency

treatment, repeated gene therapy

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12
Q

Outline Lesch-Nyan syndrome

A

HGPRT deficiency blocks salvage pathway

no recycling of bases, high uric acid waste

Only De Novo

malfunction of CNS

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13
Q

Outline pyrimidine build up

A

PRPP + orotate = UMP then to UTP and CTP

CTP inhibits first reaction

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14
Q

Outline pyrimidine break down

A

broken down to malonyl-CoA and nitrogen converted to urea

cytidine, uridine and deoxythymidine can all be converted back to nucleotide form

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15
Q

Outline hereditary orotic aciduria

A

enzyme deficiency in UMP synthesis

severe anaemia, growth retardation, high orotic acid excretion

treatment, feeding uridine

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16
Q

Explain why Drugs can target pyrimidine metabolism

A

ribonucleotide reductase converts ribose to deoxyribose forms

thymidylate synthase catalsyses dUMP to dTMP, folate is required

targeting this can help stop cells that replicate to quickly (cancer)

17
Q

Name the drugs targeting thymidylate synthase reaction

A

(chemot)
Fluorouracil: inhibits thymidylate synthase

(chemot) Methotrexate and Aminopetrin: prevent folate regeneration

(antib)
Trimethoprim: prevent folate regeneration

18
Q

Outline transamination

A

transfer of amino group from amino acid to a keto acid

catalysed by transaminase (aminotransferases)

ends with alpha keto acid

mostly occurring in liver

19
Q

outline deamination

A

cleavage of amino group from glutamate

ends with alpha ketoglutarate and ammonium

catalysed by glutamate dehydrogenase

20
Q

how do amino acids travel to the liver

A

glutamine-glutamate cycle

21
Q

outline the glutamine-glutamate cycle

A

deamination forms glutamate

glutamine transports NH3 to liver for excretion

22
Q

how do amino acids travel to the liver FROM MUSCLE

A

glucose-alanine cycle

23
Q

outline the glucose-alanine cycle

A

muscles breakdown amino acids for energy during starvation

NH3 travels as alanine to liver from muscle

deaminated to pyruvate which can be converted to glucose for energy

24
Q

Energy requirement of urea cycle

A

4 phosphates per urea

25
Q

Outline steps of urea cycle

A

deamination of glutamate

urea contains 2 amine groups from glutamine/glutamate and aspartate

fumarate released with connects with CAC

26
Q

What is the relationship between the CAC and urea cycle

A

fumarate enters CAC

aspartate needed for urea cycle formed from oxaloacetate of the CAC

27
Q

What are glycogenic and ketogenic carbon skeletons

A

alpha keto acids that:

produce glucose through gluconeogenesis

produce ketone bodies

can be both

28
Q

Carbon skeletons and CAC

A

All carbon skeletons can enter the CAC somehow

But ketogenic better suited to producing ketone bodies because to enter CAC they use up oxaloacete (also in CAC) cancel out each other so no net gain

29
Q

Outline phosphocreatine

A

high energy molecule utilised in short bursts of energy in skeletal muscle

creatinine breakdown product excreted in urine