Topic 4 - Modern DNA Multiplexes Flashcards

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1
Q

what are the combinations of loci looked at in DNA analyses called

A

multiplexes

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2
Q

what is ESS

A

the European standard set = the standard loci for DNA analysis

includes 7 loci specified to be included to make comparisons between profiles

6 loci are needed to perform an international search

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3
Q

what was SGM

A

the test that was being used when the National DNA database was set up in 1995

second generation multiplex

using 6 loci plus AMEL indicating the sex

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4
Q

why was a new multiplex system (improving on SGM) needed

A

in 1999 a match was found on the database but the person was very unlikely to have committed the crime = adventitious match

the need for a more discriminative method was needed

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5
Q

what are the three types of DNA match observed in forensic DNA analysis

A
  1. reference samples and unknown crimes
  2. crime to crime = giving investigative links
  3. person to person = between references and samples, can be used to identify duplicates if someone has given a false name
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5
Q

what was the next multiplex developed after SGM

A

SGM+

this built on the 6 loci used in SGM - 10 loci were now included

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5
Q

give three things DNA profiling can be used for

A
  1. paternity testing
  2. crime scene investigation
  3. DVI - disaster victim identification
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6
Q

if a samples DNA profile can not be found on the database what is done next to give an investigative lead

A

a familial search to see if any of these may be on the database

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7
Q

why was DNA 17 developed (2)

A

SGM+ was working well but there was still the need for more discrimination so this multiplex was introduced using 17 loci- there were adventitious matches still occurring

SGM+ also struggled with degraded DNA = not very sensitive

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8
Q

why do police officers often as for DNA profile searches against databases from other countries (2)

give some examples of crimes this search is often related to (4)

A
  • to prevent criminals fleeing justice by moving abroad
  • deal with cross-border and inter-country crime

terrorism
trafficking
drug smuggling
DVI

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9
Q

what must be used in order to make comparisons between reference and crime samples

A

the same profiling and multiplex system

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10
Q

what is near match reporting

when is it applied

what can this suggest

A

when a crime scene sample and reference sample do not exactly match but have enough allele matches to be considered potentially relevant

applied when there is 1-3 allele difference

this could suggest the actual match is a relative of the individual giving the reference sample

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11
Q

give 4 suggestions as to why the allele difference may be seen in near matches (non-concordance)

how are these issues overcome

A
  1. data entry errors (prevented by using automated computer systems)
  2. primer binding site mutation
  3. use of two different multiplex instruments
  4. two very similar profiles - so confusion

overcome by retesting the crime scene samples and reference ensuring the same multiplex is used

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12
Q

what was the Prum Convention in 2005

did the UK accept this idea

A

the routine exchanging of data from DNA and fingerprint databases across countries in the EU

no, many different countries use different multiplex systems so shouldn’t really be compared

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13
Q

what is ENFSI and

what did they do about DNA analysis

A

the European Network of Forensic Science

agreed set requirements for an improved DNA test
- include more loci (17)
- be more robust to inhibition
- get better results from smaller and/or degraded samples

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13
Q

what 2 things were commonly found leading to poor crime samples so DNA profiles could not always be found

A
  1. degraded DNA
  2. things in the samples that would inhibit elements of the profiling process
14
Q

what makes comparing across different multiplexes difficult

A

the order and position of the loci are not the same between different multiplexes = room for more error in comparisons by eye

15
Q

what does allow continuity and back compatibility between new and old DNA multiplex systems

A

the original 6 loci in SGM was included in SGM+ and the 10 here were included in DNA 17

16
Q

give three benefits of DNA 17 over SGM+

A

more discriminative = uses 17 loci

more sensitive = starting threshold of 500pg (more than half of threshold in SGM+) sensitivity has doubled

less effect by inhibition by soil, microbes, plant and faecal contamination

17
Q

how has DNA 17 affected the PCR process

A

lower amounts and degraded DNA can be analysed so the number of PCR cycles has increases from 28 to 29-31

18
Q

what is a problem with the fact that DNA 17 has an increased sensitivity

A

contamination will have a greater affect and even slight contamination may impact the profile

19
Q

how many loci does the multiplex that Scotland uses have

A

one that looks at 21 loci