topic 4: Animal Housing/Facility Management Flashcards

1
Q

main areas of a facility (from cleanest to dirtiest)

A
  • surgery rooms
  • procedure rooms
  • animal housing rooms
  • bedding and feed storage rooms
  • quarantine rooms
  • cleaning & washing areas
  • necropsy & carcass disposal room
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2
Q

what kind of equipment is found in a surgery room?

A
  • surgical table
  • operating lights
  • anaesthetic machine
  • ventilator
  • fluid pump, CRI machine
  • relevant monitoring equipment
  • autoclave (with or without dryer)
  • scrub area in the antechamber with adjoining prep room
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3
Q

what kind of equipment is found in a procedure room?

A
  • required machinery (e.g. anaesthetic machine, etc.)
  • imaging equipment (e.g. X-ray) may be housed separately due to different requirements such as wall shielding.
  • floors may need to be reinforced to withstand machinery weight
  • BSC (biosafety cabinet) for procedures e.g. injections/blood draws/euthanasia/tissue collections
  • consumables & drugs in fridge/safety cabinets as required
  • diagnostic lab (if applicable)
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4
Q

what kind of equipment is found in an animal housing room/quarantine room?

A
  • IVC racks
  • animal transfer station/cage changing station
  • BSC here is optional but good to have!
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5
Q

what kind of equipment is found in a feed/bedding storage room?

A
  • metal shelves/wooden pallets to elevate the feed from the ground
  • at least 6 inches away from the walls
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6
Q

what kind of equipment is found in a cleaning/washing area?

A
  • cleaning equipment e.g. pressure washers, hoses, disinfectants, sprayers
  • bedding scrapping station
  • rodent cage washer
  • industrial autoclave
  • chemical cabinet
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7
Q

what kind of equipment is found in a necropsy/carcass disposal room?

A
  • necropsy table
  • fridges/freezers to store carcasses
  • histopathology equipment
  • liquid nitrogen tanks
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8
Q

ALL ROOMS SHOULD HAVE….

A
  • emergency shower & eyewash station
  • handwashing sink
  • drainage hole with appropriate cover
  • fire extinguisher
  • thermometer
  • hygrometer
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9
Q

SPF vs Conventional animal housing

A
  • free of a specific list of pathogens by routine testing (SPF) vs microbial burden unknown & untested, may harbour diseases (conventional)
  • IVC/flexible film isolators (SPF) vs shoe box cages (conventional)
  • “clean” facility (SPF) vs no defined “clean” or “dirty” traffic flow (conventional)
  • food and bedding are autoclaved/irradiated (SPF) vs feed and bedding may not be sterile (conventional)
  • water undergoes reverse osmosis (SPF) vs water can be tap water (conventional)
  • air is HEPA filtered (SPF) vs not HEPA filtered (conventional)
  • “clean”/”barrier”* environment (SPF) vs “clean” & “dirty” items can enter/exit from the same doors (conventional)
  • procedures/cage change done in Animal Transfer Station or ABSL-2 safety cabinet hood (SPF) vs in open rooms (conventional)
  • restricted access (SPF) vs unrestricted access (conventional)
  • PPE required (SPF) vs PPE may not be required (conventional)
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10
Q

barrier environment

A
  • prevents infectious agents from entering an area where animals of a defined health status are housed/used
  • may have wet showers or changing into dedicated clothing/footwear/sterile disposable outer garments
  • PPE, show covers, gloves, face masks, hairnets
  • airlock/air shower & shoe bath
  • only SPF animals may pass through the area
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11
Q

microenvironment

A
  • immediate physical environment that is surrounding the animal
  • environment in the primary enclosure (cage, pen, stall, etc.)
  • resources which animals come directly into contact with
  • temperature, humidity, ventilation, gaseous/particulate composition of air
  • affects behaviour, health, well-being of the animal & physiology of the animal
  • may be influenced by the macroenvironment (room that the cages are housed in)
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12
Q

primary enclosures should…..

A
  • allow normal physiological/behavioural needs of animals (e.g. urination, defecation, normal movements &posture adjustments, breeding & maintenance of body temperature)
  • allow social interaction & development of hierarchies within or between enclosures
  • allow animals to be clean and dry (as consistent with species requirement)
  • resist corrosion and withstand sanitation
  • allow adequate ventilation
  • allow access to food and water
  • allow easy filling/refilling, changing, servicing and cleaning of water and food utensils
  • provide a secure environment that does not allow escape or the accidental entrapment of appendages/animals between surfaces
  • be free of sharp edges that may injure the animals
  • allow observation of animals with minimal disturbance to them
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13
Q

ventilation of cages

A
  • well-ventilated
  • door grills
  • wire bottoms to let air circulate well
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14
Q

open-top caging

A
  • barrier is at room level
  • plastic cage with lid covering the top
  • exposed to macroenvironment!!!
  • must set the temperature/humidity of the macroenvironment properly
  • potential contamination from personnel or the environment is the HIGHEST
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15
Q

static isolator cage

A
  • barrier is at cage level
  • plastic cage with lid covering the top, no seal around the lid
  • some possible cross contamination
  • there is no action of moving air in or out of the cage (low ventilation)
  • disposable cages are available for cytotoxic studies
  • can be expensive to replace
  • MODERATE risk of contamination from personnel
  • higher levels of waste gases (Ammonia, CO2)
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16
Q

individually ventilated cages (IVC)

A
  • silicone o-ring seal
  • some possible cross contamination
  • air is circulated in or out of the cage by rack. frequency is adjustable
  • cages are reusable & stand up to sanitising procedures
  • expensive to replace & set-up
  • lowest risk of contamination from personnel
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17
Q

factors that affect the microenvironment (temperature and humidity)

A
  • housing materials & construction
  • use of filter tops
  • number of animals per cage
  • forced ventilation of enclosures
  • frequency of bedding changes and bedding type
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18
Q

what happens if humidity in the microenvironment is too high/too low?

A
  • ideal: 55% (+/- 10%)
  • if too high: respiratory disease in rats or nasal dermatitis infection in gerbils
  • if too low: ringtail in rats
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19
Q

ideal temperature & humidity settings (for rodents, nude rodents, guinea pigs, rabbits)

A
  • rodents: 20-24°C, 55% (+/- 10%) humidity
  • nude rodents: 22-26°C, 55% (+/- 10%) humidity
  • guinea pigs: 18-24°C, 40-70% humidity
  • rabbits: 16-22°C, 55 (+/- 10%) humidity
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20
Q

macroenvironment

A
  • physical environment of the secondary enclosure (room/barn/outdoor habitat)
  • affects the behaviour, health, well-being of animals & physiology of animals
  • macroenvironment can affect the microenvironment
  • temperature
  • relative humidity
  • ventilation
  • dust
  • lighting
  • noise & vibrations
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21
Q

room temperature (macroenvironment)

A
  • 18-24°C
  • must have MINIMAL FLUCTUATIONS
  • monitor closely
  • limit fluctuations to +/- 2°C
  • changes in temperature causes animals to respond by altering their metabolic rates
  • this may affect experimental results due to metabolic inconsistencies
  • drug activity/toxicity/metabolism/feed & water intake/reproductive performance/growth/susceptibility to diseases may all be affected
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22
Q

relative humidity (macroenvironment)

A
  • affects thermoregulation, food consumption, activity level, disease transmission
  • may cause respiratory problems in animals (see card 18)
  • can cause spoilage of feed and mould growth in bedding
  • can be 30-70%, +/- 5-10% or whatever is the most appropriate for the species
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23
Q

ventilation (macroenvironment)

A
  • good ventilation/air exchange rates can help to remove heat, ammonia, carbon dioxide and any airborne particles
  • 10-15 air exchanges per hour is recommended
  • positive (air gets pushed out) & negative pressure (air gets sucked in)
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24
Q

dust (macroenvironment)

A
  • microorganisms can attach to dust particles and contaminate animals & their environments
  • can possibly cause LAA (lab-acquired allergies)
  • change room filters periodically for optimal effectiveness
  • maintain proper air flow rate into the room
  • good housekeeping
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25
Q

lightning (macroenvironment)

A
  • lights that are too bright can cause stress to the animal
  • wavelength of light that the animal is exposed to will impact growth, reproduction & development
  • albino animals may get phototoxic retinopathy when exposed to light above 300 lux (too intense)
  • 12 hour light/dark cycles
  • 10 hour light/14 hour dark may be used for breeders
  • red lights can be used (researchers can continue work even in the dark while minimising disturbance to rodents)
  • red films on the door panels (prevent corridor lights from going into the room
  • cage/racks can be rotated routinely relative to light sources
  • animals can be provided with tunnelling/hiding structures so they can modify their own light exposure
  • providing variable intensity light controls
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26
Q

noise and vibrations (macroenvironment)

A
  • more than 85 decibels of noise can cause unnecessary stress, decreased breeding/fertility, rabbits jumping in cages
  • affects food/water intake, blood pressure, hormones/immune responses, WBC count & plasma cholesterol levels & learning abilities
  • pigs and dogs (noisier animals) should be housed away from rodents and rabbits (noise sensitive animals)
  • no radio except if for enrichment for NHPs
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27
Q

benefits/importance of environmental enrichment in relation to animal welfare

A
  • improves biological function of captive animals living in a modified environment
  • increases the number and range of normal behaviour of animals
  • decreases abnormal behaviours
  • increases animal’s interaction with the environment
  • enhances animal’s ability to cope with behavioural & physiological challenges
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28
Q

examples of environmental enrichment

A
  • social interaction (animal & animal or animal & human)
  • food enrichment (foraging behaviour)
  • physical enrichment (experiencing different microenvironmental conditions such as shelters, perches & bedding)
  • sensory enrichment (engages an animal’s senses, may not necessarily require interactions e.g. TV, music or smells)
  • cognitive & occupational resources (positive reinforcement technique (PRT), puzzles & activities)
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29
Q

role of the laboratory technician

A
  • animal care & husbandry
  • animal acquisition
  • transportation
  • quarantine and conditioning
  • health monitoring (reporting abnormalities & checking on sick animals)
  • biological waste/carcass disposal
  • record keeping & facility maintenance
  • daily animal and housing checks (ensure that there is food and water, ad-hoc cleaning)
  • husbandry as required (daily, weekly, bi-weekly, etc.)
  • giving treatment to sick animals as required
  • emergency care (if needed)
  • removing dead animals
  • separating animals when weaning is due so that there is no overcrowding in cages
  • ensuring enrichment is available in cages
30
Q

animal acquisition (role of the laboratory technician)

A
  • must be LAWFUL (with approvals & proof of purchase from authorised suppliers)
  • collect information from suppliers regarding the genetics & pathogen status of their colonies/individual animals + their clinical history
  • breeding colonies should only be established based on need (managed according to the principles of animal reduction)
31
Q

animal transportation: sending out (role of the laboratory technician)

A
  • fill up the respective facility’s transfer form
  • check that the animal details match the order of the buyer (strain/breed, conventional/SPF/axenic, health status, age & size of the mice)
  • use an appropriate transport container, bedding & food and water
32
Q

animal transportation: receiving (role of the laboratory technician)

A
  • disinfect cages at the receiving area (spray the outside of the cages)
  • check for cracks/damages to the outer containers
  • load cages onto trolley & push to quarantine room for arrival inspection
  • perform the initial health check
  • ensure order number and details of those ordered & those received match
  • note any abnormalities or mortalities
  • place animals into a new cage
33
Q

animal quarantine/conditioning (role of the laboratory technician)

A
  • separate newly received animals from those already in the facility until their health & microbial status is determined
  • minimising the chances of pathogens being introduced to the established colonies
  • quarantine periods will vary based on species, source & health status
34
Q

how long must rodents spend in quarantine before procedures can be performed?

A
  • 3 days (72h) to 1 week in quarantine before use in survival surgery or long term experiments
  • non-survival/euthanasia can be performed on the day of arrival BUT note that transport stress can affect the results
35
Q

how long must non-rodents (e.g. cats/dogs/livestock) spend in quarantine before procedures can be performed?

A
  • at least 3 days (72h) for non-survival/minor procedures
  • at least 1 week before use in survival surgeries/chronic protocols
  • euthanasia & tissue harvest can be performed on the day of arrival
36
Q

what does survival surgery/non-survival surgery mean?

A
  • survival = animal will survive the surgery
  • non-survival = animal will be euthanised afterward
37
Q

health monitoring (role of the laboratory technician)

A
  • fresh faeces and swabs from the mucosal surface of the cheeks are collected from newly arrived animals
  • if animals are already established in the facility, designated animals in each colony will be used for testing (sentinel animals)
  • at least 1 cage of sentinel animals in 1 rack, minimum 1 male and 1 female
  • samples are analysed by PCR to check for the presence/absence of any pathogens
38
Q

biological waste (solid/liquid/sharps) removal (role of the laboratory technician)

A
  • solid waste disposed in biohazard bags with appropriate labels
  • all lab specimens or materials/paper waste contaminated with biological tissues/fluids, inoculated media/cultures must be autoclaved before disposal
  • used sharps in the sharps bin (puncture-resistant, tight fit lid)
  • do not fill the sharps bin above the full line!
  • liquid waste in closed, leakproof containers (CANNOT POUR DOWN THE SINK)
  • for liquid waste, secondary containment is required. place a tray underneath the primary container!
39
Q

carcass removal (role of the laboratory technician)

A
  • store carcasses in the chest freezer
  • biohazard bags with label (species, date of death, number of animals in the bag, study number if applicable)
  • there may be a file attached to the fridge to fill up as a tally at the end of the week/month
  • contact the disposal vendor to come down and collect the carcasses
  • freezer can be cleaned out & de-iced after the carcasses are collected
  • liaise with the disposal vendor for collection BEFORE THE FRIDGE IS FULL
40
Q

daily record keeping (role of the laboratory technician)

A
  • room logs (temperature, humidity, light intensity)
  • animal checks (check if animals are injured/dead, abnormalities, if any action has been taken, refer to cage cards)
  • equipment (damaged items, cages/bottles, any error messages on the machinery)
  • entry and exit logs
41
Q

weekly/monthly record keeping (role of the laboratory technician)

A
  • equipment maintenance log
  • room maintenance log (checks of emergency shower, date with personnel name)
  • refilling chemicals/consumables (must log out items from storage room)
  • enrichment records
42
Q

ad-hoc record keeping (role of the laboratory technician)

A
  • restricted drugs
  • quarantine records (when animals arrive or leave)
  • findings from audits
43
Q

maintenance (role of the laboratory technician)

A
  • biological indicator testing of autoclaves (G. Thermophilus spores)
  • testing of HVAC system
  • automated environmental monitoring
  • effectiveness of sanitation (RODAC/ATP bio-luminance detectors: see topic 5)
  • annual testing of anaesthetic machine vaporisers
  • annual testing/calibration of weighing machines
  • preventative maintenance of BSC and ATS
44
Q

food (husbandry: role of the laboratory technician)

A
  • type of diet (if the protocol requires a special diet, it will be written down or made verbally known)
  • if the wrong diet is fed, rectify immediately and notify the researcher
  • whether treats are allowed and type, frequency, quantity of the treat if allowed
  • place food on feeders or within the cages to allow for easy access & to minimise contamination with waste
  • sufficient amount for ALL animals in the cage
  • small volumes/opened bags can be stored within the room in a resealable & air-tight container
  • if opened bags of food contain vitamin C/other light sensitive components, make sure to protect it from light to maintain the nutritional value
  • food storage containers should not be transferred between areas that pose different contamination risks
45
Q

food - aquatic (husbandry: role of the laboratory technician)

A
  • store in an appropriate container to preserve nutritional content, minimise contamination & prevent entry of pests
  • choose a feeding method where all animals can access food for a sufficient amount time
  • an appropriate feeding method can minimise feeding aggression and nutrient loss
  • aquatic species may not require free-choice or daily feeding
  • live feed must be maintained & managed to ensure a steady supply
  • the health and sustainability of feed needs to be ensured
46
Q

water & dosing of substances via water (husbandry: role of the laboratory technician)

A
  • unrestricted access unless otherwise specified by the IACUC protocol
  • certain experiments may require substances to be dosed to the animal via water (e.g. gentamicin in gut microbiome studies)
  • check the cage card and IACUC protocol number carefully! DON’T ANYHOW DOSE
  • if the substance to be dosed is light sensitive, use a darkened bottle/wrap the bottle in foil
47
Q

water - aquatic (husbandry: role of the laboratory technician)

A
  • aquatic species requires appropriately conditioned water (tap water may contain chlorine or chloramines at levels that may be toxic)
  • amphibians/reptiles may need bowls for soaking/drinking
  • reptiles may require an additional UV/heat lamp
48
Q

physical methods to control pesticides & vermin (husbandry: role of the laboratory technician)

A
  • traps
  • sticky boards in animal/feed rooms
  • seal & regularly inspect pipelines/drains/air filters
  • good housekeeping
  • proper waste disposal
49
Q

chemical methods to control pesticides & vermin (husbandry: role of the laboratory technician)

A
  • pesticides
  • take care that pesticides do not come into contact with animal’s food, water or bedding
  • pesticides should only be administered by trained personnel
  • follow the package instructions CLOSELY!
50
Q

HVAC (husbandry: role of the laboratory technician)

A
  • environmental (temperature/humidity) and space pressurisation control
  • pressurisation can control airborne contamination and odours by providing directional airflow
  • positive VS negative pressure
  • relative humidity
  • ensure to know check species you are setting for as the settings may vary between species (check card 19)
  • system should be designed for reliability, ease of maintenance & energy conservation
  • note that nude animals need higher temperature and humidity
51
Q

positive pressure

A
  • air pressure inside the room is HIGHER than the corridor
  • air travels from higher pressure to lower pressure
  • air rushes OUT when the door is opened
  • for clean rooms
  • surgery room
  • surgical prep room
  • animal room (if axenic/SPF)
  • food prep room
  • treatment room (if clean)
52
Q

negative pressure

A
  • air pressure inside the room is LOWER than the corridor
  • air travels from higher pressure to lower pressure
  • air rushes IN when the door is opened
  • animal room (if conventional)
  • necropsy rooms
  • loading docks
  • corridors (lower relative to the clean rooms. the others listed here are lower relative to the corridor)
  • treatment (if dirty)
  • isolation room (the corridor outside the isolation room is positive as there may be airborne diseases inside that should stay inside the room)
53
Q

redundancy in HVAC system: good or bad?

A
  • GOOD!
  • if the system breaks down, there is a spare unit ready to take over OR during maintenance when one unit has to be shut off for cleaning
  • if there is no extra unit to replace it, the other units will have extra strain
  • may cause an outage in the facility
  • if the entire system is down, temperature & humidity rises until it can be fixed
  • maintenance may take up to an entire day or more
  • animals will be stressed
  • basic husbandry cannot be done
  • washing area will be humid = heat strokes
  • condensation will form on the walls of feed and bedding storage room = growth of mould = contamination of feed and bedding
54
Q

call back (husbandry: role of the laboratory technician)

A
  • movement is from cleanest to dirtiest area
  • only open cages in ATS/cage changing station/BSC
  • daily animal checks (check food and water sources)
  • spot cleaning of cages along with scheduled cleaning during husbandry
55
Q

bedding (husbandry: role of the laboratory technician)

A
  • select the appropriate bedding (see topic 3)
  • small volumes/opened bags can be stored within the room itself in a resealable, air-tight container in facilities
  • a suitable amount of bedding must be provided, around 2cm
  • sufficient for animals to express their normal behaviour (e.g. burrowing)
  • for rodents: fresh bedding can be autoclaved/irradiated/sterilised within the clean cage
  • for aquatic species: substrate requires routine syphoning to remove any organic debris
56
Q

sanitation

A
  • maintaining environmental conditions conducive to health and well-being
  • involves bedding change (when appropriate), cleaning & disinfection
  • sufficiently clean & dry bedding
  • air quality
  • clean cage surfaces & accessories
  • depends on what is necessary to provide a healthy environment for an animal
  • sterilisation VS cleaning VS disinfection
57
Q

sterilisation VS cleaning VS disinfection

A
  • STERILISATION: destruction of all organisms & their vegetative spores on a surface
  • CLEANING: removes excessive amounts of excrement, dirt & debris
  • DISINFECTION: reduces or eliminates unacceptable concentrations of microorganisms, may or may not kill the spores of the organisms
58
Q

frequency & intensity of cleaning/disinfection depends on…

A
  • physiological &. behavioural characteristics of the animal
  • species
  • physical characteristics
  • size of enclosure
  • rate of soiling of the enclosure
  • number of animals
  • age of animals
  • reproductive status
  • type of bedding
  • temperature & relative humidity
59
Q

cleaning of primary enclosures (cages), water bottles, feeders, tunnels, etc.

A
  • chemicals, hot water (82°C) or both
  • washing time, condition & any post-washing processes (e.g. sterilisation) are usually enough to reduce or eliminate vegetative forms of opportunistic pathogens
  • chemical disinfectants or detergents may enhance the effectiveness (RINSE OFF PROPERLY)
  • chemicals may be contraindicated for some aquatic species as their residue may kill the animal (CHECK BEFORE USING)
  • for RABBITS, an extra step of cleaning with phosphoric acid may be needed to break down their urine before washing (their urine contains high concentrations of proteins & minerals)
60
Q

cleaning/washing of pens or runs

A
  • need to be flushed with water at least once a day to remove any animal waste
  • keep the animals as dry as possible during this process
  • if hot water is being used, consider moving the animals to a temporary holding area to protect them from scalding
  • disinfectants & detergents can be used periodically
  • timing of flushing should take normal behaviour/physiological processes of animals into account (e.g. gastrocolic reflex in meal-fed animals like pigs results in defecation shortly after consumption of food)
61
Q

emergency preparedness

A
  • unexpected conditions may result in catastrophic failure of critical systems or significant personnel absenteeism which may compromise ongoing animal care & well-being
  • important part of the animal care & use program
  • plans should identify leadership, essential personnel & procedures and communication strategies in the event of disrupted routine operations
  • ensure the welfare & safety of animals and personnel
  • includes animal relocation (and if not possible, considerations for euthanasia)
  • includes cryopreservation to prevent loss
  • plan should be reviewed and revised regularly
  • needs to be current and updated.
62
Q

four phases when constructing a crisis plan

A
  1. risk assessment and mitigation
  2. preparedness
  3. response
  4. recovery
63
Q

phase 1: risk assessment and mitigation (constructing a crisis plan)

A
  • types of potential threats
  • prevention/control
  • euthanasia of animals
  • shelters for responders
64
Q

phase 2: preparedness (constructing a crisis plan)

A
  • response training
  • workshops
  • chemical spill response
  • tabletop exercise (ERPs/BCPs)
  • live practice drills e.g. fire drills
65
Q

phase 3: response (constructing a crisis plan)

A
  • personnel response
  • incident command
  • communication (call tree, Whatsapp group, etc)
66
Q

phase 4: recovery (constructing a crisis plan)

A
  • going back to “normal” after a crisis
  • animal and equipment replacement (if needed)
  • personnel physical and mental health
  • regulatory agencies (AVS, IACUC, etc.)
  • materials and resources
67
Q

Emergency Response Plans (ERPs)

A
  • fire response
  • bomb threat
  • power failure
  • portable water
  • aircon & mechanical ventilation response
  • medical incident
  • civil disorder
  • flood/water leak
  • severe weather/natural disasters
  • infectious disease outbreak
  • animal rights protests
68
Q

Business Continuation Plan (BCP)

A
  • collection of resources, actions, procedures and information that is developed, tested & held in readiness for use in the event of major disruption of operations
  • helps to minimise the impact of major disasters and other disruptions
  • helps to return to normal operations as quickly as possible
  • e.g. cryopreservation so that stock can be revived if something goes wrong
69
Q

emergency plan

A
  • what to do before or during an emergency
70
Q

can wild-caught animals be used for experimental purposes?

A
  • can!
  • only if they are tested/treated to be clean
  • however, they must be bred and only generation 1 of their offspring can be used for the experiment