Theme 2: Advanced Microbiology Flashcards
A person is described as being pyrexial when __?__
their temperature is over 38 degrees.
How does procalcitonin aid diagnosis in a patient with a suspected infection?
Differentiates between bacterial and viral
What is the most important investigation to confirm a clinical diagnosis of pneumonia?
CXR
What effect might a bacterial infection have on these lab results?
a) WCC
b) Lymphocytes
c) Neutrophils
a) WCC - raised
b) Lymphocytes - normal or low
c) Neutrophils - raised
What effect might a viral infection have on these lab results?
a) WCC
b) Lymphocytes
c) Neutrophils
a) WCC - normal
b) Lymphocytes - raised
c) Neutrophils - normal
What does sensitivity testing tell you in microbiology?
Pathogen resistance to specific antimicrobials.
Concentration of antimicrobial required to kill the organism.
What is meant by ‘empiric’ antimicrobial therapy?
Initial treatment of infection with broader spectrum antimicrobials.
What are the limitations and uses of blood cultures?
Uses: Establish presence of microorganism, determine, identify targeted therapy, provides typing information.
Limitation: Slower than direct detection, can only detect cultivable organisms, can only detect organisms at specific site.
Direct detection of microorganisms can detect either the whole organism (by __1__) or components of the organism (__2__ or __3__).
1) microscopy
2) antigen
3) nucleic acid (DNA or RNA)
What method is used to detect nucleic acid of an organism?
PCR
What method of microbial identification is usually the fastest?
Direct detection
__?__ is the transition from no antibody response to an antibody response. Identifiable as a change from a negative result on one test, to a positive result on the next.
Seroconversion
If a patient’s antibody concentration rises from 1/2 to 1/32, this would be called a __?__
‘fourfold rise in titre’
Why is antibody testing not usually able to help inform antimicrobial therapy decisions?
The convalescent sample is taken 10 days to 2-weeks after the event.
This is often too late to inform antimicrobial therapy decisions.
Describe the normal variation in temperature for a patient with fever
Fevers are usually associated with diurnal variation in temperature: increases during the early day and goes down at night.
How is fever useful in diagnostic testing?
Most commonly caused by infections.
Pyrogens secreted at sites of infection are detected by hypothalamus. Hypothalamus responds by sending signals for generating and retaining more heat.
Raised neutrophil count generally indicates ____
bacterial infection
Raised lymphocytes generally indicates ____
viral infection
True or false: raised monocytes may indicate a chronic infection.
True, though it is important to note they are also raised in acute infections
Raised eosinophil count generally indicates ____
parasitic infection
Raised basophils generally indicates ____
viral infection
Raised CRP/procalcitonin means what?
Indicates potential bacterial infection (but not definitely). Negative inflammatory markers suggest infection is less likely.
High sensitivity; low specificity.
Which of the following is true of inflammatory marker in a blood test:
a) high sensitivity; high specificity
b) low sensitivity; low specificity
c) high sensitivity; low specificity
d) low sensitivity; high specificity
c) high sensitivity; low specificity
Often picks up a bacterial infection if present (few false negatives); but also raised by a range of other things (many false positives)
How can lactate be useful as an infection test?
Raised lactate may indicate severe infections such as sepsis and meningitis.
What component is usually being identified in serology tests for infection?
Levels of antibodies (IgM, IgG). Will be raised if infection present.
Acute viral infections are generally caused by viruses with which type of nucleic acid?
RNA viruses
Influenza, measles, mumps, HAV
Chronic viral infections are generally caused by viruses with which type of nucleic acid?
DNA viruses
Herpes simplex, CMV, HIV, HBV
True or false: Viruses are obligate intracellular parasites
True
This means they can only replicate inside cells.
When should you use antivirals?
High risk patients with acute infection
Chronic viral infections - prevent further damage
Immunosuppressed
Which antivirals are herpesvirus polymerase inhibitors?
Aciclovir and ganciclovir
Which antivirals are used to treat CMV?
Ganciclovir (CMV): guanosine analogue that inhibits viral DNA polymerases.
Cidofovir (CMV retinitis in patients with AIDS): targets viral DNA synthesis by inhibiting herpesvirus polymerase
What infections are commonly treated by aciclovir?
HSV and VZV (chicken pox and shingles)
Usually treatment only given in severe cases or for patients who are immunocompromised.
Severe cases usually involve encephalitis or disseminated HSV.
What is the mechanism of action of aciclovir?
Converted to aciclovir triphosphate, which inhibits HSV DNA polymerases, preventing viral DNA synthesis
When is aciclovir given prophylactically?
Patients with frequent reactivation of herpes virus.
Prevention of infection/reactivation following transplant (immunosuppressed).
When might it be appropriate to treat chicken pox with aciclovir?
When presenting in adults.
No need to treat children.
When might it be appropriate to treat shingles with aciclovir?
Age >60yo
Involves the eyes
Immunocompromised
What drugs are used to treat influenza in high risk patients?
Neuraminidase inhibitors:
Oseltamivir
Zanamivir
Which patients are considered high risk when deciding whether or not to treat influenza?
Chronic disease
Diabetes Mellitus
Immunosuppressed
Age >65yo
Pregnant (and two-weeks post partum)
Age <6mo
Morbid obesity (BMI >40)
What treatment is used to eradicate chronic viral infections such as HCV, HBV, and HIV?
HBV and HIV are DNA viruses that cannot be eradicated. They usually require lifelong treatment.
HCV is an exception as it is an RNA virus that causes chronic infection. Therefore, direct-acting antivirals can eradicate the virus.
HCV RNA polymerase nucleotide inhibitors (e.g. sofosbuvir) are effective at eradicating HCV.
Nucleoside reverse transcriptase inhibitors (NRTIs) are either analogues of __1__ to affect the growing chain in transcription, or the inhibit the proper functioning of __2__.
1) nucleotide bases
2) polymerase
Aciclovir and ganciclovir are ____ inhibitors
herpesvirus polymerase
Aciclovir is an analogue of ____
guanosine
What do non-nucleotide reverse transcriptase inhibitors target?
Allosteric inhibition of polymerases.
How do protease inhibitor antivirals work?
Proteases break down proteins. The viruses need protease enzymes to break down the chains they make into smaller individual enzymes necessary for the virus to function. Protease inhibitors interrupt this process.
What is Fidaxomicin used for?
Relatively new drug , solely treats C.Diff in the bowel
When is Fosfomycin likely to be used?
Effective against many resistant strains, used to treat UTIs
Beta-lactams target the ____
cell wall
Which specific types of antibiotic are classified as beta-lactams?
Any with a b-lactam ring (C-C-C-N)
- Penicillins
- Cephalosporins
- Carbapenems
- Monobactams
Benzylpenicillin and phenoxymethylpenicillin are ____ spectrum penicillins
narrow
The broader spectrum penicillins are ____ and ____
amoxicillin and pivmecillinam
Which penicillin is resistant to penicillinase?
Flucloxacillin
What class of antibiotic are these?
Cephalexin, cefuroxime, cefotaxime, ceftriaxone, ceftazidime
Cephalosporins
These are beta-lactams, therefore they target the cell wall by preventing peptidoglycan crosslinking
How do beta-lactams work?
Prevent peptidoglycan cross-linking by interfering with function of transpeptidase enzymes
What class of antibiotic are these?
Ertapenem, imipenem, meropenem
Carbapenems
These are broad spectrum beta-lactams. Therefore they target the cell wall: prevent peptidoglycan cross-linking by interfering with function of transpeptidase enzymes.
Aztreonam is a type of __1__ and is only effective __2__ bacteria.
1) monobactam (subtype of beta-lactam)
2) gram negative
Which beta-lactam is safe for use in patients with penicillin allergy?
Aztreonam
Although it is still a beta-lactam, the ring in its structure is sufficiently different.
What combinations can be used to overcome beta-lactamase?
Co-amoxiclav (augmentin): amoxicillin with clavulanic acid
Tazocin: piperacillin with tazobactam
What are some problems with using BLBLI therapy?
(BLBLIs = beta-lactam, beta-lactamase inhibitors)
- Very broad spectrum, therefore predispose to c. diff.
- Names don’t end with “-illin” or start with “cef-“. Makes it easy to forget about penicillin allergy.
__1__ and teicoplanin are both glycopeptides that target __2__. They are only effective against gram __3__ strains.
1) Vancomycin
2) the cell wall
3) positive
Glycopeptides are unable to penetrate the outer-membrane porins of gram negative species, therefore they are ineffective against them.
How do glycopeptide antibiotics work?
The glycopeptides (vancomycin and teicoplanin) act on the cell wall.
They prevent peptidoglycan cross-linking by competitively inhibiting transpeptidases.
Vancomycin is an example of a ____ antibiotic.
Glycopeptide
Teicoplanin is an example of a ____ antibiotic.
Glycopeptide
Aminoglycosides, MLSs and tetracyclines all target ____
protein synthesis.
Aminoglycosides: gentamicin, amikacin
MLS = macrolides, lincosamides, streptogramins:
Erythromycin, clarithromycin, clindamycin
Tetracyclines:
Doxycycline, tigecycline
Which antibiotics bind to the 30s subunit of the ribosome, preventing translation of RNA into proteins?
Aminoglycosides:
Gentamicin, amikacin
Which antibiotics bind to the 50s subunit of the ribosome, preventing elongation of the protein chain?
Macrolides, Lincosamides, streptogramins (MLS):
Erythromycin, clarithromycin, clindamycin