The Eukaryotic Cell; The Nervous System Flashcards
Nucleus
Eukaryotes have ‘em, prokaryotes don’t. The nucleus contains all of the DNA in an animal cell (except for a tiny amount that’s in the mitochondria). The aqueous ‘soup’ in the nucleus is the nucleoplasm.
Nuclear envelope
AKA nuclear membrane; the double phospholipid bilayer that surrounds the nucleus.
Nuclear pores
The nuclear envelope is perforated with large holes called nuclear pores. RNA can exit the nucleus through the nuclear pores– DNA can’t. (That’s why transcription MUST take place in the nucleus.)
Nucleolus
A structure inside the nucleus where rRNA is transcribed and the subunits of the ribosomes are assembled. The nucleolus is NOT separated from the nucleus by a membrane.
Endocytosis
The other way– besides transport across the membrane– that cells can acquire substances from the extracellular environment. Several types: phagocytosis (“to eat”), pinocytosis (“to drink”), and receptor mediated endocytosis.
Phagocytosis
1/3 types of endocytosis. The cell membrane protrudes outward to envelope and engulf particulate matter. The impetus for this happening is the binding of proteins on the particulate matter to protein receptors on the phagocytotic cell. For instance, in humans these proteins can be antibodies or complements and the receiving cells can be macrophages or neutrophils.
Once the matter is engulfed, the membrane bound body is called a phagosome.
(Note that only a few specialized cells can perform phagocytosis.)
Pinocytosis
1/3 types of endocytosis. Extracellular fluid engulfed by small invaginations of the cell membrane. Performed by most cells randomly, “nonselective”.
Receptor mediated endocytosis
1/3 types of endocytosis. Specific uptake of macromolecules like hormones and nutrients. This happens when the ligand binds to a receptor protein on the cell membrane, then is moved to a pit coated with clathrin, a protein that forms a polymer by adding structure to its underside, ultimately invaginating to form a vesicle.
This is different from phagocytosis because receptor mediated endocytosis ABSORBS the ligands, whereas the ligands in phagocytosis are just SIGNALS which initiate phagocytosis of other particles.
Exocytosis
The reverse of endocytosis = expulsion of matter. A secretory vesicle brings the particulate matter to the plasma membrane, where it is secreted.
Endoplasmic reticulum
In eukaryotic cells. A thick maze of membranous walls which separates the cytosol from the ER lumen/cisternal space. In many places, the ER is continuous with the cell membrane and the nuclear membrane.
The endoplasmic reticulum has two appearances: smooth and rough, which serve different functions.
Cytosol
The aqueous solution inside the cell.
ER lumen
AKA cisternal space, the “extracellular fluid” side of the ER. Continuous in places with the space between the double bilayer of the nuclear envelope.
Rough ER
AKA granular ER. ER near the nucleus has many ribosomes attached to it on the cytosolic side, giving it a granular appearance. TRANSLATION OF ALL PROTEINS NOT USED IN THE CYTOSOL HAPPENS HERE.
Translation on the rough ER propels proteins into the ER lumen as they are created. These proteins are tagged with a signal sequence of amino acids and sometimes have carbohydrate chains added (are “glycosylated”). These newly synthesized proteins are then pushed into the ER lumen toward the Golgi.
Golgi apparatus
AKA Golgi complex. The “protein post office”! The Golgi apparatus is a series of flattened, membrane-bound sacs. Small transport vesicles bud off from the ER and carry the proteins across the cytosol to the Golgi.
The Golgi organizes and concentrates the proteins as they are shuttled by transport vesicles progressively outward from one compartment of the Golgi to the next.
The Golgi distinguishes proteins by their signal sequence and carbohydrate chains (which were added in the rough ER, remember?). The Golgi may also glycosylate or remove amino acids from proteins, or form polysaccharides.
If proteins DON’T have a signal sequence, they are packaged into secretory vesicles and expelled from the cell. This is called BULK FLOW.
The end product of the Golgi is a vesicle full of proteins. These proteins may:
- Be expelled as secretory vesicles
- Be released to mature into lysosomes
- Be transported to other parts of the cell
Secretory vesicles
AKA zymogen granules. May contain enzymes, growth factors, or extracellular matrix components. Some proteins are also activated here (such as proinsulin, which only becomes insulin after the secretory vesicle buds off the Golgi).
Secretory vesicles release their contents through exocytosis. They also act as the vehicle to supply the cell membrane with its integral proteins and lipids, and as the mechanism for membrane expansion.
Secretory vesicles are constantly released by most cells. Some specialized cells can release them in response to some stimulus.
Lysosomes
The “garbage can”!
LYSOSOMES BUD OFF MEMBRANES FROM THE GOLGI.
Lysosomes contain hydrolytic enzymes that function best in acid environments (acid hydrolases such as proteases, lipases, nucleases, and glycosidases), which works because lysosomes have an pH of 5.
- These enzymes can break down every major macromolecules in the cell. Lysosomes fuse with endocytotic vesicles and digest their contents. Anything not degraded by the lysosomes is ejected by exocytosis.
- Lysosomes also degrade cytosolic proteins in an endocytotic process.
- Lysosomes can also rupture and release their contents into the cytosol, killing the cell. This is called autolysis, and is useful in the formation of certain organs and tissues (like destroying the tissue between the digits of a human fetus to form fingers).
Smooth ER
AKA agranular ER, because has no ribosomes. Appears tubular. Basically, the site of lipid synthesis including steroids. Also helps to detoxify some drugs.
More specifically, the smooth ER plays several important roles:
- Contains the enzyme used in the liver, intestinal epithelial cells, and renal tubule epithelial cells. Uses it to hydrolyze glucose 6-phosphate to glucose (an important step in the production of glucose from glycogen).
- Produces triglycerides and stores them in fat droplets called adipocytes. These are important for energy storage and body temperature regulation.
- Shares with cytosol the job of cholesterol formation and conversion to steroids.
- Synthesizes the phospholipids in the cell membrane on the cytosol side, and then flips some to the other side using proteins called “phospholipid translocators”.
- Oxidizes foreign substances, detoxifying drugs, pesticides, toxins, and pollutants.
Peroxisomes
Vesicles in the cytosol which grow by incorporating lipids and proteins from it. PEROXISOMES SELF-REPLICATE (they do not bud off like lysosomes from the Golgi).
Inactivate toxic substances such as alcohol.
Regulate oxygen concentration.
Help synthesize and break down lipids.
Help metabolize nitrogenous bases and carbohydrates.
Organelles
Internal compartments in the cell which are separated from the cytosol by membranes.
Cytoskeleton
A network of filaments that determines the structure and motility of a cell.
Anchors some membrane proteins and other cellular components, moves components within the cell, and moves the cell itself.
Major types of filaments within the cytoskeleton are microtubules, microfilaments, and intermediate filaments.
Microtubules
A type of filament making up the cytoskeleton. Larger than microfilaments.
Rigid, hollow tubes made from tubulin protein, appear as a spiral because of the two types of tubulin (alpha and beta) used in the synthesis. 13 of these filaments lie alongside each other to form the tubes.
Have a (+) and a (-) end. The minus end attaches to a microtubule organizing center (MTOC) in the cell. A microtubule grows away from an MTOC at its (+) end.
Note that the mitotic spindle is made from microtubules. They are also involved in flagella and cilia construction.
Microfilaments
A type of filament in the cytoskeleton. Smaller than microtubules.
Made of actin protein.
Squeeze the membrane together in phagocytosis and cytokinesis. Also the contractile force in microvilli and muscle. They are responsible for cytoplasmic streaming (amoeba-like movement).
Flagella and cilia
Specialized structures made from microtubules. Contain an axoneme and dynein cross bridges.
Cilia- found only in the fallopian tubes and respiratory tract- have a whip motion, cause fluid to move laterally.
Flagella have a wiggle motion, cause fluid to move away from the cell.
IMPORTANT NOTE. PROKARYOTIC AND EUKARYOTIC FLAGELLA ARE DIFFERENT! Eukaryotic flagella are made from a 9+2 microtubule configuration and undergo a WHIPLIKE motion. Prokaryotic flagella are thin strands of a single protein called flagellin and ROTATE.
Axomene
The major portion of each flagellum and cilium.
Contains 9 pairs of microtubules forming a circle around 2 lone microtubules (this arrangement is called 9+2).
Dynein
A protein which makes up the cross bridges in flagellum and cilium.
The cross bridges connect each of the outer pairs of microtubules to their neighbor, and also give flagella and cilia their distinctive movements.
Centrosome
The major MTOC (microtubule organizing center) in animal cells. Anchors chromosomes to each other in mitosis.
Centrioles
Help produce flagella and cilia.
Intermediate filaments
Not as dynamic as microtubules or microfilaments. Primary serve to give the cell structural rigidity. One example of keratin, which is found in the epithelial cells and is associated with hair and skin.
Tight junctions
1/3 attachments connecting animal cells.
Form a watertight seal from cell to cell that can block water, ions, and other molecules from moving around and past cells. May act as a complete fluid barrier. Also act as a barrier to protein movement around the cell.
Found in the bladder, intestines, kidney, etc., in order to prevent waste materials from seeping around the cells and into the body.
Think of tight junctions as the plastic seal connecting a six-pack of cans (with one caveat: cells may be permeable or impermeable– cans are not.)
Desmosomes
1/3 attachments connecting animal cells.
Join two cells at a single point. Attach directly to the cytoskeleton of each cell. (Think of them like spot welds holding cells together.)
Found in tissues that experience a lot of stress, like skin or intestinal epithelium.
Often accompany tight junctions, though they do not prevent fluid from circulating around all sides of a cell.
Gap junctions
1/3 attachments connecting animal cells.
Small tunnels connecting cells. Allow small molecules and ions to move between cell.
Found, for instance, in cardiac muscle, where they provide for the spread of the action potential from cell to cell.
Mitochondria
Powerhouses of the eukaryotic cell. Krebs cycle takes place here. Formed via endosymbiont theory.
Have their own circular DNA that replicates independently from the eukaryotic cell. This DNA contains no histones or nucleosomes. Most animals have a few dozen to several hundred molecules of circular DNA in each mitochondrion. Mitochondrial DNA is passed maternally, even in organisms whose male gamete contributes to the cytoplasm.
This DNA codes for its own RNA, distinct from the RNA in the rest of cell. Therefore, mitochondria also have their own ribosomes.
Also- interestingly- mitochondria present an exception to the universal genetic code, because some of the codons in mitochondria differ from the codons in the rest of the cell.
Mitochondria are surrounded by 2 phospholipid bilayers (an inner and outer membrane, with an intermembrane space between them). The inner membrane invaginates to form cristae. It is the inner membrane that holds the electron transport chain.
Be able to relate mitochondria to respiration!
Extracellular matrix
A molecular network that holds tissue cells in place. “The stuff surrounding the cell, formed by the cell itself.” Differs depending on the tissue.
May provide structural support, help to determine cell shape and motility, and affect cell growht.
Made up of three types of molecules in animal cells:
- Glycosaminoglycans and proteoglycans, for pliability
- Structural proteins, for strength (most common is collagen)
- Adhesive proteins, to adhere together