test 2 Flashcards

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1
Q

In the classic experiment by Griffith, evidence of the action of a hereditary biomolecule was identified by

A

transformation (phenotypic change) of the R strain by biomolecules

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2
Q

Oswald Avery and colleagues strengthened scientific support that DNA was the transforming factor by replicating the Griffith experiment with some important differences in experimental design. The key difference was:

A

systematically eliminating the impact of classes of S strain biomolecules using enzymatic digestion before mixing with R strain live cells.

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3
Q

Oswald Avery and colleagues strengthened scientific support that DNA was the transforming factor by replicating the Griffith experiment with some important differences in experimental design. They found that the enzyme ______________ was effective at destroying the transforming capacity of S strain biomolecules.

A

DNase (DNA destruction)

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4
Q

Chargaff’s rules do NOT hold for which of the following genome types?

A

single-stranded DNA virus

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5
Q

Of the three key building blocks of DNA, which type(s) of building block is/are negatively charged and oriented on the outside of the double helical structure?

A

phosphate

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6
Q

Which statement BEST describes the arrangement of components in a DNA molecule?

A

Nucleotides are located toward the inside of the strands and the phosphates toward the outside.

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7
Q

Which statement below BEST describes the situation between nucleotides on opposite strands in a DNA molecule?

A

A-T bonding between opposite strands involves two hydrogen bonds, whereas G-C bonding between strands involves three hydrogen bonds.

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8
Q

The replisome contains a protein subunit responsible for unwinding the double helix to enable DNA replication. This subunit/enzyme is named

A

helicase

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9
Q

Why does DNA with a high G + C content require higher temperatures to melt?

A

G–C base pairs have three hydrogen bonds.

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10
Q

When comparing the three key models of DNA replication, the model that included the separation of the two strands of the original DNA (template) and using those strands as templates to synthesize two new DNA strands is called

A

semiconservative replication

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11
Q

Topoisomerase and helicase have distinct functions that include which of the following?

A

Helicase is responsible for unwinding the double helix (separating strands).

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12
Q

The complexity of lagging strand replication is necessary because

A

as polymerization occurs only in the 5’-to-3’ direction, the lagging strand must be synthesized in consecutive small fragments.

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13
Q

Initiation of replication occurs at an “origin of replication” site that typically includes an AT-rich region. Initiation benefits from these AT-rich regions because

A

adenine-thymine pairs are held together by two H-bonds, making them easier to separate during unwinding.

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14
Q

When replicating the end of a chromosome, the lagging strand cannot copy the last ~10 nucleotides at the end of the chromosome. As a result, chromosomes contain telomere sequences at their ends, which are defined as

A

noncoding, repetitive sequences that can be copied independent of the replisome.

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15
Q

Primase and telomerase enzymes are both considered types of

A

reverse transcriptases

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16
Q

Template strand DNA and encoded RNA are

A

complementary of one another with antiparallel orientation.

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17
Q

If the DNA template 5′-ATGCATGC-3′ were transcribed to RNA, the RNA would read

A

3′ UACGUACG 5′

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18
Q

RNA synthesis is always 5′ to 3′ because

A

nucleotides can only be added to an available 3′-OH group on the transcript terminus.

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19
Q

The role of tRNA is to

A

act as transporters bringing amino acids to the site of protein synthesis.

20
Q

In a chromosome, which of the following is TRUE?

A

RNAs of different genes can be transcribed off either DNA strand, but always 5′ to 3′.

21
Q

The sigma factor protein’s role in transcription in E. coli includes which of the following?

A

helps the holoenzyme to bind to the promoter

22
Q

why does E.coli have several different sigma factors?

A

they allow RNA polymerase to recognize and bind to a different subset of promoters.

23
Q

Telomerase activity relies on ________________ for appropriate priming.

A

a short, telomeric RNA sequence that is carried within its structure

24
Q

pyrimidines

A

thymine and cytosine

25
Q

purines

A

adenine and guanine

26
Q

deoxynucleotide monophosphates

A

are part of the polynucleotide chain and have single phosphates.

27
Q

helicase

A

unzipping enzyme that breaks hydrogen bonds that hold DNA bases together

28
Q

SSB proteins

A

bind to DNA strands to keep DNA strand separated

29
Q

topoisomerase

A

keeps DNA from supercoiling

30
Q

Primase

A

helps DNA polymerase figure out where to start building by making primer. it is also made of RNA.

31
Q

DNA polymerase

A

builds new strand in the 5’ to 3’ direction. this means it moves along the old, template strand in the 3’ to 5’ direction.

32
Q

ligase

A

glues the DNA fragments together. take care of gaps between Okazaki fragments by sealing them together.

33
Q

semi conservative DNA

A

two copies, each containing an old original strand and one newly made one.

34
Q

DNA polymerase is cool because

A

it rarely makes mistakes because it proofreads.

35
Q

DNA replication in eukaryotes

A

replication occurs in both directions from multiple points of origin. happens in the S phase of the 4 phases.

36
Q

telomeres

A

Chromosomes ends in eukaryotes are repetitive DNA sequences.

37
Q

RNA polymerase synthesizes

A

5’ to 3’

38
Q

stages of RNA transcription

A

initiation, elongation, termination

39
Q

RNA transcription initiation

A

Starts with RNA polymerase in a two-step process. the holoenzyme loosely attaches to the promoter to make a closed promoter complex. then the holoenzyme unwinds the around the -10 position to form the open promoter complex

40
Q

RNA transcription elongation

A

holoenzyme starts RNA synthesis at the + 1 site. then after the 8 to 10 RNA nucleotides have been joined the sigma factor dissociates from the core enzyme. This allows DNA to unwind 18 bp ahead of the enzyme while the double helix forms behind the RNA polymerase.

41
Q

RNA transcription termination

A

in bacteria is signaled by a DNA termination sequence that usually contains a repeating sequence.

42
Q

intrinsic termination

A

a mechanism dependent only on the presence of the repeat induces secondary structure needed for termination

43
Q

rho-dependent

A

require a different sequence and pho protein

44
Q

RNA polymerase in bacteria bins to promoter regions when initiating transcription. what DNA sequence attracts the binding of RNA POL?

A

promoter consensus sequence

45
Q

what allows the bacterial RNA polymerase to recognize different promoter with different consensus sequences

A

sigma factors

46
Q
A