Study design dot point 1 Flashcards

Proteins as a diverse group of molecules thatcollectively make an organisms proteome includingenzyme catalysts in biochemical pathways

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1
Q

Enzymes

A

Organic catalysts lower the activation energy of reactions to increase the rate of chemical reactions.

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2
Q

Substrate

A

Rectant of an enzyme facilated reaction

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3
Q

Catalyst

A

molecules that speed up a chemical reaction without itself undergoing any permanante chemical change

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4
Q

Active site

a

A

substrate binding site which the substrate’s shape is complemenary to

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5
Q

What happens if the substrate is increased

A

the enzymefacilated reaction RATE speeds upbecause the substrate with outcompete the competiive inhibotr to bind to te active siteof the enzyeme

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6
Q

How do enzymes catalyse reaction

A

Enzymes reduce activation energy to increasetherate of reaction(catalyse reactions)

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7
Q

Enzyme inhibiton

A

When an enzyme is prevented from catalysing a chemical reaction

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8
Q

hOWt does competitive inhibition differ from non competiitve inhibition

A

Competitive inhibition is when the active site is blocked by inhibitiors

Whereas, non compeitive inhibtiors change the shape of the active site by binding toan allostraic site.

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9
Q

An example of compeitiveinhibiton

A

An example of a competitive inhibitor is cyanide as cyanide disrupts cellular respiration by preventing the substrate from binding to the active site.

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10
Q

allosteric site.

A

a regulatory site on a protein that allows molecules to either activate, inhibit, or turn off, enzyme activity

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11
Q

allosteric site. vs active site

A

The active site’s shape is complementary to the substrate’s shape, allowing them to fit together like a lock and key. Whereas, an allosteric site is a regulatory site on a protein that can affect enzyme activity by activating, inhibiting or turning off enzyme activity

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12
Q

Why is it advantageous the cell to inhibit a biochemical pathway

A

It is advantageous for the cell to inhibit a biochemical pathway because this results in the regulation the activity of enzymes, allowing for precise control over metabolic processes

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13
Q

How do enzymes work

A

enzymes work by reducing the activation energy, thereby increasing the rate of reaction

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14
Q

8 features of enzyesm

A

1.reusable-not broken down during the chemical reaction

2.specifci meaning enzymes are compememnatary to usually one active site.

3.reversibe-

  1. enzymes speed up(catalayse) reactions by lowering theactivation energy of a reaciton but dont create new reactions
  2. Most enzymes Are proteins, but some RNA molecules are capable of acting like proteins
  3. Are a subset of a catalyst-
  4. act on an entire biochemical pathway
  5. Enzymes are typically seen above the arrow in chemical reactions
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15
Q

How does temperature affect enzyme reactions?–be able to answer both less makr questions nad high mark questions

A

,At low temperatures kinetic energy is low, therefore fewer and slower collisions between enzymes andsubstrate, causing become enzymes to become inactive and to perform poorly.

Whereas, as temperatures increase,kinetic energy is very high n collisons between enzymes and the substrate, resulting in enzynmme denature

This results ina conformational change inthe active siteof the enzyme, causign thesubstrate to no longer fit

and the rate of reaction will drop to optimal temperature.

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16
Q

WHat temperature do enzymes perform the most effiectvely

A

37 degress celsius

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17
Q

Anabolic reaction

A

reactions that build smaller molecules into larger molecules

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18
Q

Catabolic reactions

A

reaciton that breaks down larger molecules into smaller moleculees.

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19
Q

How does PH affect enzyme reactions?

A

PH affects enzyme reactions bc Each enzyme has an optimum pH range, therefore Changing the pH outside of this range will slow enzyme activity.

Additonally,Extreme low/high pH values can cause enzymes to denature.

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20
Q

How do enzyme concentration affection reaction rates

A

Increasing enzyme concentration will speed up the reaction, as long as there is substrate available to bind to the active site.

Whereas, decreasing enzyme concentration will decrease the rate of reaction as there is less enzymes for the substrate bind to.

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21
Q

Whathappenswhent
the active site isfull

A

Equiblrim will be reached when the active site is ful wich is called the saturation point resulting in a reaction plateau

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22
Q

What is the differnece between denaturation and inactivation

A

denaturation involves a change in the enzyme’s structure and is irreversible. Whereas, inactivation involves a loss of catalytic activity without necessarily altering the enzyme’s structure and is also irreversible.

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23
Q

Difference between anabolic and catabolic reactions

A

anabolic reactions that build smaller molecules into larger molecules eg.photosythneiss, whereas catabolic reactions are reactions that break downlargemolecuesinto smaller molecules eg. carbs brokendown into glucose by amylase

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24
Q

How is digestion a catabolic reaction

A

large molecules of food are broken down via chemical or mechnanicalmethods

25
Q

How isphotosyhtnexssi a anabolic reaction

A

carbon dioxide and water are used to build glucose

26
Q

compare competitive and non-competitive inhibition

A

A competitive inhibitor competes with the substrate for binding at the active site of the enzyme. Whereas, A noncompetitive inhibitor binds at a site distinct from the active site

27
Q

explain how increasing substrate concentration can distinguish between competitive and noncompetitive inhibition

A

1site,increasing substrate concentration cause substrateto outcompete the compeitive inhibitor to bind totheactive site oftheenzyme enzyme.

However, noncompetitiveinhibitors cannot be outcompeted to bind to the activesite enzyme because they alter the shape of active site onan allosteric site to fit to thesubstrate.

28
Q

explain how decreasing substrate concentration can distinguish between competitive and noncompetitive inhibition

A

As the substrateand competitive inhibitor compete for space on the active site,decreasing substrate concentration will increase theavaliabity forthe competitive inhibitor to bind to the active site. Therefore, the compeitive inhibitor will outcompetee the substrate to bind tothe enzyme.

WWheras,decreasingsubstrateconcentrationwillnot affect the noncomeptiiveinhibtior as noncompetitiveinhibitors willnot outcoompete thesubrate to bind to the activesite enzyme because they alter the shape of active site onan allosteric site to fit to thesubstrate.

29
Q

Why do we vomit, in terms of enamel, sensitivity, PH, enzymes and tooth sensitivity.

A

Vomit occurs in order to get rid of any harmful substances or undigested material from
the body. It contains gastric acid as well as proteolytic enzymes which causes enamel
erosion and thus tooth sensitive

30
Q

High temperatures are dangerous for enzymes because

A

it results in denaturation of enzymes

31
Q

Compare PH levels of neutral, acidifc and alkaline

A

1-6=acidic
7-neutral
8-14-basic/alkaline

32
Q

What does PH stand for

A

potential of hydrogen

33
Q

Proteom what is andhow is it created

A

the complete set of proteins expressed by an organism and are created

34
Q

When a substrate binds to an enzyme’s active site, together they form a

A

enzyme substrate complex

35
Q

What is a conformational change and when does it occur

A

a conformational change is a change in the shape of a protein molecule often induced by environmental factors. It occurs upon binding of the substrate and the active site.

36
Q

exergonic reaction

A

chemical reaction that releases energy

37
Q

endergonic reaction

A

a chemical reaction that absorbs energy

38
Q

what kind of chemical reaction compare between anabolic and catabolic reactions

A

Catabolic reactions are exergonic, whereas all anabolic reactions are endergonic.

39
Q

Why does an exergonic reaction require activation energy?

A

activation energy is required to initiate an exergonic reaction

40
Q

When molecules cant absorb enough chemical energy because activation energy is high, what can be done to create a chemical reaction

A

1.add energy

  1. lower activation energy
41
Q

Why does lowering the activation energy required for a reaction to take place?

A

Lowering activation energy means that less energy is required for the reactions to reach the transition state at which old bonds break and new bonds form for achemical reaction to occur

42
Q

Anabolic reactions require lots of activation energy, how is this large quantity of activation energy produced

A

A cell must couple a catabolic, exergonic reaction with an anabolic, endergonic reaction.

43
Q

affinity

A

the attraction between the active site and the substrate

44
Q

How doesthe substrate bind to the active site for catabolic reactions

A

substrate binds to the active site because it is almost complemenatry. Then,uponbinding the enzyme changes shape, which stresses the bonds in the substrate helping to catabolise into 2 products.

45
Q

How does thesubstrate bind to the active site during anabolic reactions

A

substrate binds to the active site because it is almost complemenatry. Then upon binding, the enzyme changes shape making it easier for a bond to form between them to ultimately create a product.

46
Q

In an exthoermic reaction the energyof the products is

A

lower than energy of the reactants

47
Q

In an endothermic reaction,the energy of the products is

A

higher than the energy of thereactants

48
Q

Intercelluar enzymes

A

enzymesthat perofmr their functions inside of thecell

49
Q

extracelluar enzymes

A

enzymes that perfomrtheir functions otuside of the cell

50
Q

Zymogen

A

proteins that contain an inactive enzyme that functions to enable the production of inactive enzymes within the cell that are not activated until after they are secreted

51
Q

How do enzymes work

A

Enzymes lower activation energy requiredfor thechemical reaction to take pace

52
Q

How do enzymes differ from catalysts

A

enzymes are a type of biological catalystthat speedsup chemical reactionswithin living organisms

53
Q

What is the activation energy?

A

Activation energy is the minimum amount of energy required to energise atoms or molecules to state where thye cna undergoe a chemicalreaction.

54
Q

How do certain enzymes not work until they reach their intended location and whatare these called

A

zymogens do not work until theyreahc their intedned location as they are not yet activated

Vesicles also prevent damaged from the cell occuring bypreventing a chemicalreaction from occurring

55
Q

Biochemical pathway

A

a step by step series of interconnected biochemical reactions in which each step is catalyzed by a specific enzyme

56
Q

saturation point

A

no more solute will dissolve in the solve

57
Q

why can noncompetitive inhibitors not be outcompeted by the enzyme to bind to the substrate

A

it is because non-comp inhibitors do not bind to the active site and instead
binds to an allosteric site of the enzyme causing a change in the conformation of the active site
and thus, is irreversible

58
Q

how does concentaton affect enyzme affecitng not inrefernce to competiive inhibtior

A

morecollisons **look at the introductoon of sac poster its there