Step Review: Biochem, Cardio, Endocrine, Neuro Flashcards
What two amino acids are histones rich in?
Lysine and Arginine (Positive charge)
Which strand of DNA is methylated in DNA replication?
Template strand (helps with mismatch repair)
What 3 amino acids are required for purine synthesis?
GAG- Glycine, Aspartate, Glutamine
What enzyme is impaired in orotic acicduria?
UMP Synthase
What is the MOA of mycophenolate and ribavirin?
Inhibit inosine monophosphate dehydrogenase (final step in purine synthesis
What enzyme is the rate limiting step in the production of IMP from Ribose-5 phosphate?
PRPP synthetase
In the Lac operon, where does the repressor bind?
Operator
List the steps of the cell cycle in order. When does nucleotide excision repair occur? Mismatch Repair?
M-G1-S-G2-repeat
G1- NER
G2- MMR
Mutations in non-homologous end joining can result in what?
Fanconi anemia, Ataxia Telangiectasia
Describe RNA poly I, II and III. Which RNA is the most numerous? Largest? Smallest?
Poly I: makes rRNA (nucleolus- most numerous)
Poly II: Makes mRNA (largest)
Poly III: makes tRNA (smallest)
What is the mechanism of action of alpha-amanitin toxin?
Inhibits RNA polymerase II
Where do the processes of adding the 5’ cap, polyA tail and splicing happen? Not all necessarily the same place?
Nucleus (hnRNA–>mRNA)
What are anti-Smith antibodies actually reactive to? What is associated with anti-U1 RNP antibodies?
snRNPs, mixed connective tissue disease
Which end and with what sequence do tRNAs bind amino acids?
3’ end with CCA
Does tRNA loading require energy? What about initiation of protein synthesis?
Yes, 1 ATP for loading, 1 GTP for initiation
What is occurring when Rb is hypophosphorylated? What phosphorylates it?
Cell cycle inhibition as Rb binds and inactivates transcription factor E2F. If a CDK phosphorylates RB–> cell cycle can progress through G1-S checkpoint. (Note: cyclins activate CDKs)
Where are N-linked oligosaccharides added? O-linked?
N-RER
O-Golgi
What is the defect in I-cell disease?
Failure of golgi to phosphorylate mannose residues due to defect in N-acetylglucosaminyl-1-phosphotransferase. This means proteins are exported rather than sent to lysosomes
Coarse facial features, clouded corneas, restricted joint movement, and high plasma levels of lysosomal enzymes
I-cell disease (often fatal in childhood)
What traffics proteins from:
1) Ribosome to RER?
2) Golgi to ER (retrograde)
3) ER to golgi (anterograde)
4) Trans golgi to lysosomes and plasma membrane to endosomes
1) Signal recognition particle (SRP)
2) COP I
3) COP II
4) Clathrin
Are microvilli a form of microtubule?
No!!
What has the 9+2 arrangement of microtubules?
Cilia (use dynein cross links to move)
Where is the collagen triple helix formed(involves hydroxylation)? Where is collagen cross linked? What cofactors are needed for each?
In RER (vitamin C), extracellularly (copper for lysyl oxidase)
Hyperextensible skin, tendency to bleed and hyper mobile joints? May also be associated with what vascular problem?
Ehlers-Danlos, berry and aortic aneurysms (joint and skin due to type V collagen, vascular problems with type III)
What gives elastin its elastic properties?
Cross-linking (this occurs extracellularly)
What technique is used to detect since nucleotide polymorphisms and copy number variations?
Microarrays
What is RNAi?
RNA interference involves dsRNA that is complementary to the mRNA sequence of interest. When transfected to human cells, dsRNA separates and promotes degradation of the target mRNA
Unilateral cafe-au-lair spots, polyostotic fibrous dysplasia, precocious puberty? What is the defect? What allows survival?
McCune-Albright Syndrome. Defect in G-protein signaling. Can only survive if patient has mosaicism (lethal if affects all cells)
Heterodisomy indicates an error in what stage of replication?
Meiosis I
Inheritance pattern of hypophosphatemic rickets (Vitamin D resistant rickets)?
X-linked dominant (increased phosphate wasting at proximal tubule)
Inheritance of Alport syndrome?
X-linked dominant
Mitochondrial encephalopathy, lactic acidosis and strokes? Inheritance?
MELAS, mitochondrial (ragged red fibers) Failure of oxidative phosphorylation causes it
Inheritance of hereditary spherocytosis
AD
What is the mutation in Li-Fraumeni syndrome?
p53 mutation (multiple malignancies)
Disease with numerous hamartomas?
Tuberous sclerosis
Chromosome for CF?
Chromosome 7 deletion of Phe508
What do you suspect if you see increased immunoreactive trypsinogen on a newborn screen?
Cystic Fibrosis
Difference in mutations in Duchenne vs Becker?
Duchenne is a deletion in dystrophin, Becker is a non-frameshift insertion
Common cause of death in Duchenne MD?
Dilated cardiomyopathy
What occurs in FMR1 gene in Fragile X syndrome to decrease expression?
Methylation
What is the inheritance pattern for myotonic dystrophy?
AD
Elfin face, intellectual disability, hypercalcemia, extreme friendliness, CV problems
Williams syndrome (C7)
Vitamin that can cause alopecia, hepatic toxicity, and pseudo tumor cerebri?
Vitamin A
Administration of what vitamin will result in increased transketolase activity if it is deficient?
Vitamin B1 (thiamine)
Vitamin deficiency with cheilosis and corneal vascularization?
B2
What is required for niacin synthesis?
Vitamins B2 and B6 plus tryptophan
Diarrhea, Dementia and Dermatitis?
Vitamin B3 deficiency
What is hartnup disease?
Deficiency of neutral acid transporters in PCT (e.g. tryptophan)
What vitamin is vital to transamination?
Vitamin B6
What type of reaction does the vitamin that can be depleted by raw egg whites partake in?
Carboxylation
What vitamin is needed for dopamine beta hydroxylase? What does this enzyme do?
Vitamin C, dopamine to NE
Vitamin C also helps absorb iron (promotes Fe3+–>Fe2+)
What if you see a neurologic presentation similar to vitamin B12 deficiency with no megaloblastic anemia or hyper segmented neutrophils? May even see acanthocytosis and muscle weakness
Vitamin E deficiency (antioxidant)
Deficiency if you cannot smell and have poor wound healing?
Zinc
What is fomepizole?
Inhibitor of alcohol dehydrogenase (antidote for methanol or ethylene glycol poisoning)
What three processes occur in both mitochondria and cytoplasm?
Heme synthesis, urea cycle, gluconeogenesis
Major regulator of urea cycle?
N-acetylglutamate
Major rate limiting enzymes in purine and pyrimidine synthesis?
Purine: Glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase
Pyrimidine: Carbamoyl phosphate synthetase II
What are the roles of HMG-CoA synthase and reductase?
Synthase: Ketogenesis
Reductase: Cholesterol synthesis
Which shuttle produces 32 ATP in heart/liver and which produces 30 in muscle?
32- malate-aspartate
30: glycerol-3-phosphate
What mutation leads to maturity-onset diabetes of the young?
Glucokinase
Name the 5 cofactors required for pyruvate dehydrogenase. Which does arsenic inhibit? What other enzyme is virtually the same?
Thiamine, lipoic acid, CoA(B5), FAD, NAD
Arsenic inhibits lipoid acid
alpha-ketoglutarate dehydrogenase
What builds up with a pyruvate dehydrogenase complex deficiency?
Lactic acid and alanine
What enzyme converts pyruvate to oxaloacetate for gluconeogenesis?
Pyruvate carboxylase (B7)
Which enzyme in the TCA cycle is embedded in the inner mitochondrial membrane and used in Ox Phos?
Succinate dehydrogenase
At what complex to cyanide and carbon monoxide work?
Complex IV
What is a direct inhibitor of ATP synthase?
Oligomycin
Which enzyme in gluconeogenesis is in the mitochondria? Required cofactors?
pyruvate carboxylase, B7, ATP
Which gluconeogenesis enzyme utilizes GTP? What TCA step can produce this?
PEP carboxykinase (succinyl CoA synthetase)
What part of FA can enter gluconeogenesis?
Only odd chain via propionyl-CoA entering as succinyl CoA via malonyl CoA (Even chain cannot enter)
Failure to track objects or develop a social smile in an infant?
Galactokinase deficiency
What amino acid contributes one amine group in urea?
Aspartate
What does tyrosinase do?
Tyrosine–>DOPA–>melanin
What is homogentisic acid in the degradation process of?
Tyrosine to fumarate
What amino acids are not reabsorbed in cystinuria? Where?
COLA- Cystine, Ornithine, Lysine, Arginine in PCT and intestinal amino acid transporters
What does a positive urinary cyanide-nitroprusside test indicate?
Cystinuria
What form of glucose is needed for glycogen synthesis by glycogen synthase?
UDP-glucose
Increased glycogen in liver, increased lactate, increased triglycerides, increased uric acid, and hepatomegaly? Enzyme?
Von Gierke- Glucose 6 phosphatase
Why in mcardle disease do you see a second-wind phenomenon?
Increased muscular blood flow. Muscle glycogen phosphorylase
Episodic peripheral neuropathy, angiokeratomas, hypohidrosis? Enzyme? What builds up? What kills them?
Fabry disease, alpha-galactosidase A, ceramide trihexoside, renal failure or CV disease late
pancytopenia, HSM, bone problems/pain. Enzyme?
Gaucher (glucocerebrosidase)
What builds up in Tay-Sachs?
GM2 gangliosidase
Gargoylism, corneal clouding, HSM. Enzyme?
Hurler (alpha-L-iduronidase)
Two causes of hypoketoic hypoglycemia?
Carnitine deficiency or acyl-CoA dehydrogenase deficiency
In alcoholism, where is oxaloacetate shunted? Why?
Malate, regenerates NAD+
How long in starvation does glycogen last?
1 day
What molecule inhibits the carnitine shuttle? Where does it come from?
If fatty acid synthesis is occurring, malonyl-CoA is being used and inhibits the carnitine shuttle and thus stops futile creation of FA
What apolipoprotein is a LPL cofactor? What disease is this implicated in?
C-II, type I familial dyslipidemia (hyperchylomicronemia)
What apolipoprotein is associated with chylomicron secretion? Remnant uptake? LDL receptor binding?
B-48
E
B-100
Which two lipoproteins carry the most cholesterol?
HDL and LDL (in opposite directions)
How is LDL taken up in target tissues?
Receptor mediated endocytosis
Which two apolipoproteins are “stored” on HDL?
E and C
What does alcohol do to HDL synthesis?
Increases it
What is the problem in type IIa familial hypercholesterolemia? Inheritance?
Absent/defective LDL receptors, AD
What is type IV dyslipidemia? What can result?
HyperTGemia, overproduction of VLDL by liver. High TGs can cause acute pancreatitis
What is the prosencephalon?
Forebrain–>Telencephalon and Diencephalon(thalamus and hypothalamus)
Which portion of the brain forms the fourth ventricle?
Rhombencephalon–>Metencephalon (Pons, Cerebellum), Myelencephalon
Which portion of the brain forms the cerebral aqueduct?
Mesencephalon (midbrain)
What does increased AChE on an amniotic fluid tap suggest?
Neural tube defect
What is anencephaly associated with?
maternal type 1 diabetes
Signaling pathway for holoprosencephaly? Associations?
sonic-hedgehog, patau and FAS
What spinal tracts are associated with syringomyelia? Normal Level? Association?
Spinothalamic (anterior white commisure), C8-T1, chiari I malformation (headaches, Drake Hardy’s sis)
What tongue muscle is innervated by CN X? What does it do?
Palatoglossus (elevates posterior tongue during swallowing)
What neural cells do HIV infect?
Microglia
What neural cells are responsible for reactive gliosis to neural injury?
Astrocytes
Where is the inflammatory infiltrate in GBS? CSF finding?
Endoneurium (single nerve fiber), isolated increase in protein
What nerve covering must be rejoined in microsurgery? Function?
Perineurium, Permeability barrier
Where is GABA produced? ACh? NE? Serotonin?
GABA- Nucleus accumbens
ACh- Basal nucleus of Meynert
NE- Locus ceruleus
Serotonin- Raphe nucleus
What type of edema do you get with destruction of the BBB?
vasogenic
What molecule makes you feel full? Where?
Leptin, ventromedial hypothalamus
What causes extra ocular movements during REM sleep?What NT is increased during this stage? Memory or No?
Paramedian pontine reticular formation (PPRF, conjugate gaze center). ACh, Yes
Preferred tx for sleep enuresis?
Desmopressin (oral) is preferred over imipramine
What is the final visual destination past the lateral geniculate nucleus?
Calcarine sulcus
What is the dopaminergic pathway that results in positive symptoms? Extrapyramidal symptoms?
Mesolimbic, Nigrostriatal
Which cerebellar peduncle is the output? Which receives input from ipsilateral spinal cord? Contralateral cortex?
Superior, Inferior, Middle
If you injure the left cerebellar laterally, which direction do you fall?
Left
What does dopamine input do to the direct and indirect basal ganglia pathways?
Stimulates direct (D1), inhibits indirect (D2), both facilitate movement
What type of tremor is worsened with movement or anxiety? Treatment?
Essential tremor. Often patients self medicate with alcohol but we prefer propranolol or primidone
Hemiballisimus is associated with what nucleus?
Contralateral subthalamic
What are Lewy bodies composed of? What are they associated with? Intracellular or extracellular?
alpha-synuclein, Parkinson, intracellular
What causes neuronal death in huntington’s?
NMDA-R binding and glutamate excitotoxicity
Where is the wernicke area of the brain?
Superior temporal gyrus
What is always intact with transcortical aphasia of any type? (Name tells you the rest)
Repetition (watershed areas without actual areas)
What disease is associated with Kluver-Bucy Syndrome?
HSV-1 encephalitis
Which parietal cortex injury results in hemineglect?
Non-dominant (usually right)
Agraphia, acalculia, finger agnosia, L-R disorientation
Gerstmann syndrome, dominant parietal cortex
What brain lesion causes the eyes to look away from side of lesion? Toward?
Away- Paramedian pontine reticular formation (PPRF)
Toward- Frontal eye field (look For lesion)
Cerebral perfusion relies on what gradient? What usually modulates it?
MAP-ICP gradient, generally driven by Pco2 unless severe hypoxia (Po2
Contralateral paralysis and/or sensory loss with the absence of cortical signs suggests a stroke where?
Lenticulostriate artery (internal capsule), usually due to hypertension (lacunar infarct)
What would you suspect with a chronic hypertension patient with thalamus or basal ganglia stroke? (internal structures)
Charcot-Bouchard microaneurysm
Aneurysm where can compress optic chiasm? CN III?
ACA, PCA
Where is the lesion in a stroke patient who has allodynia weeks to months after stroke? What is this called?
Thalamic lesion, Central Post-Stroke Pain Syndrome
Skull fracture can cause what type of hematoma? What do patients look like?
Epidural (talk then die)
What is xanthochromia and what should you be worried about?
Bloody or yellow spinal tap, subarachnoid hemorrhage
What do you suspect in a pt. who had a subarachnoid hemorrhage and 4-10 days later has symptoms of an ischemic infarct (e.g. neural sx). Treatment/prevention?
Vasospasm, nimodipine
When do you see red neurons?
12-48 hours post ischemia
Most likely cause of brain embolism?
Atrial fibrillation (potentially could be a DVT with a patent foramen ovale)
Where do dural venous sinuses empty?
Internal jugular vein
What sinus does the ophthalmic vein drain into?
Cavernous sinus
What is the foramen of monro?
Connects lateral ventricles to 3rd ventricle
Risk factors for idiopathic increase in ICP (pseudo tumor cerebri)
Vitamin A excess, danazol, tetracycline
CN VI palsy without change in mental status
Where does spinal cord end? Where does subarachnoid space end?
L1-L2 border, S2 (lumbar puncture is at L3-L5)
Which type of motor neuron lesion gives you fasciculations?
LMN (twitching due to under stimulation)
What is the difference in poliomyelitis and werdnig hoffman disease?
Polio is asymmetric, WH is symmetric (both are floppy baby)
What enzyme can cause ALS?
Defect in superoxide dismutase 1 (SOD1)
Where does poliovirus replicate before entering CNS?
oropharynx and SI (fecal-oral transmission)
What is the chromosome for Friedreich ataxia? What is the gene? What does the gene do, what dysfunctions as a result?
c9, frataxin (iron-binding protein that leads to mitochondrial dysfunction)
How does Friedreich ataxia present? Cause of death?
kyphoscoliosis in childhood. Also has diabetes and hypertrophic cardiomyopathy which kills them
What are the functions of the superior and inferior colliculi?
Superior- conjugate vertical gaze center
Inferior- hearing
“eyes above ears”
Paralysis of conjugate vertical gaze causes and name?
Parinaud syndrome: pinealoma, stroke, hydrocephalus
Where does the middle meningeal artery exit? CN VII? CN X?
MMA- foramen spinosum
CN VII- internal auditory meatus
CN X- jugular foramen (with CN IX and XI)
What cranial nerve does not have a thalamic relay to cortex?
CN I
What muscle does CN IX innervate?
stylopharyngeus (elevation of pharynx and larynx)
What does “everything wet in the head?” Exception?
Facial nerve with the exception of the parotid gland which is innervated by CN IX
What cranial nerve nucleus does taste?
Nucleus solitarius
Where does the vagus nerve have motor activity? PSNS?
Motor- nucleus aMbiguus- pharynx, larynx, esophagus
PSNS- Dorsal Motor Nucleus- Heart, lungs, upper GI
What reflex is all one nerve? Branches?
Jaw jerk V3 both ways (muscle spindle)
What muscle opens the mouth?
Lateral pterygoid
Does UMN or LMN lesion of facial nerve spare the forehead?
UMN. Nucleus for forehead is innervated by UMN from both sides
Treatment for Bell palsy?
Corticosteroids, acyclovir
Nerve most susceptible to injury in cavernous sinus?
CN VI
What is a cholesteatoma? Due to fat and cholesterol?
Overgrowth of desquamated keratin debris within middle ear space that can erode ossicles and cause conductive hearing loss. Looks like a nasty thing behind eardrum. NOOOOO!
What are the layers on the back of the eye from inner to outer?
Retina, choroid, sclera
What muscarinic fibers are in the eye? What do they do?
M3. Increase outflow via canal of schlemm and constrict the pupil (iris)
What types of drugs decrease the synthesis of aqueous humor? Where is it produced?
Ciliary body, beta blockers, alpha-2 agonists, carbonic anhydrase inhibitors
Hyperopia vs Myopia. Describe relative to where the light focuses.
The light focuses in behind the retina of the hyperopic eye and in front of the myopic eye.
What is presbyopia, what causes it?
Age-related impaired accommodation due to decreased lens elasticity
Progressive peripheral field visual loss? Painful? Painless?
Glaucoma. Open-angle is painless, closed/narrow angle is painful (true emergency if acute)
What race is more predisposed to open-angle glaucoma?
African americans
What drug can you not give with acute closure glaucoma?
Anything that does mydriasis (alpha 1)
What causes loss of central vision?
Age-related macular degeneration
What is ranibizumab? What does it treat?
Anti-VEGF antibody that can treat eye conditions associated with neovascularization causing loss of vision (wet macular degeneration, proliferative diabetic retinopathy)
Flashes and floaters leading to curtain drawn down on vision? What causes it?
Retinal detachment. Separation of neurosensory layer of retina (photoreceptors) from outermost pigmented epithelium
Painless progressive vision loss beginning with night blindness?
Retinitis pigmentosa (inherited retinal degeneration)
What nerve causes pupil constriction?
Edinger-Westphal nucleus–>ciliary ganglion (CNIII)–> short ciliary nerves
What is the relation of CN II to the edinger westphal nucleus?
CN II–> pretectal nuclei–> bilateral EW nuclei (cause of consensual reflex)
What nerve mediates mydriasis?
Long ciliary nerve (sympathetics via ciliospinal center of budge to cervical ganglion)
Light in one eye to the other results in down bilateral constriction. What is the name and what is the cause?
Marcus-Gunn pupil, damage to optic nerve or severe retinal injury
What is the Meyer loop? Parietal or Temporal?
Temporal optic radiation
Which two nerves does the MLF connect? What nerve fires first? What is a defect called? Which eye gets nystagmus?
CN VI to CN III (CN VI first). A defect is called internuclear ophthalmoplegia (often in MS) in which the abducting eye gets nystagmus
Describe senile plaques and neurofibrillary tangles in alzheimers. Intracellular/extra, composition?
Plaques: extracellular beta amyloid
Tangles: intracellular hyperphosphorylated tau protein
What correlates with the degree of dementia in alzheimers? What is this functionally?
Number of neurofibrillary tangles, cytoskeletal elements
What is the composition of the round inclusions in frontotemporal dementia? What are they called?
hyperphosphorylated tau, Pick bodies
Dementia and hallucinations followed by parkinsonian features? What inclusions do you see (composition, location)
Lewy body dementia
Intracellular Lewy Bodies- alpha synuclein primarily in cortex
Startle myoclonus is a symptom of what dementia disease?
CJD
What is the triad with MS? What is the cause? Important findings for diagnosis (2)?
Charcot triad: scanning speech, intention tremor and nystagmus. Autoimmune etiology. Periventricular plaques and oligoclonal bands.
What might you give for spasticity in MS? Acute MS flares?
Baclofen
Steroids
What is acute inflammatory demyelinating polyradiculopathy? What is the CSF finding? What drug do you not use?
Common subtype of GBS Albuminocytologic dissociation (isolated inc. in protein) No role for steroids
Foot deformities, lower extremity weakness and sensory deficits? Cause?
Charcot-Marie-Tooth: autosomal dominant disorder related to defective production of proteins involved in structure and function of peripheral nerves or myelin sheath.
What builds up in Krabbe? Metachromatic leukodystrophy? Difference?
Krabbe: galactocerbroside, peripheral neuropathy, optic atrophy
ML: sulfatides, central and peripheral demyelination
What two antibodies increase risk of reactivating latent JC virus infection? What is this called?
PML- rituximab, natalizumab