Section 5: Cell Processes Flashcards
Plasma membrane structure
A thin, 8nm flexible and sturdy barrier that surrounds cytoplasm of a cell
2 back-to-back layers of 3 types of lipid molecules; glycolipid and cholesterol, which are scattered among a double row of phospholipid molecules
Fluid mosaic model
Describes membrane structure
‘sea of lipids in which proteins float’
What makes up the membrane? (%)
50% lipid and 50% protein, held together by H bonds
Lipid is barrier to entry/exit of polar substances
Proteins are ‘gatekeepers’ - regulate traffic across lipid bilayer
Why is the plasma membrane critical for cellular function and evolution?
DNA, mitochondria and cytoplasm can’t be freely floating around in primordial suit and must be contained in a membrane so there’s a difference between the inside and outside of the cell
What is the ‘outside’ for a single cell
The outside world, so must have a barrier which enables it to partition itself from the outside world
Phospholipids - lipids
Comprises 75% of lipids
Phospholipid bilayer
2 parallel layers of molecules
Phospholipid - amphipathic
Phospholipids will orient themselves to provide the lowest energy structure
Each molecule has both a polar and non-polar region
Non-polar hydrophobic tails face each other and exclude water so water is outside of lipid bilayer
Water interacts with polar head groups - excluded from hydrophobic core
Membrane fluidity
Membranes are fluid structures and lipids can move around within the plane of the membrane leaflet and allow lateral diffusion of proteins within the lipid bilayer
Lipids rarely flip flop between membrane leaflets –> lipid composition of leaflets can be asymmetric
Fluidity of membrane is determined by…
Lipid tail length: longer tail = less fluid
No. of double bonds: more double bonds = increased fluidity
Amount of cholesterol: more cholesterol embedded = decreased fluidity
What does fluidity determine
Properties of lipid bilayer - how many molecules can get through it
Can maintain differences in lipid composition - diff on one side of membrane facing inside and membrane facing outside
e.g. water diffusion
Membrane fluidity - double bonds
Introduces kinks in the tail, which allows them to pack less tightly to give more fluidity –> membrane is less stable
Types of membrane proteins
Integral proteins
Peripheral proteins
Integral proteins
AKA transmembrane protein
Amphipathic
Extend into / completely across cell membrane - able to sense molecules on outside and inside of cell for movement across membrane
Peripheral proteins
Attached to either inner or outer surface of cell membrane and are easily removed from it (by changes in ionic strength)
Peripheral membrane proteins - cytoskeleton proteins
Linked to membrane proteins embedded in lipid bilayer, which can bend and change shape of membrane or hold membrane proteins in a particular place
Can easily break these interactions by exposing membrane to an ionic solution to break chemical bonds and strip peripheral proteins from membrane
Integral proteins - hydrophobic regions
Have hydrophobic regions that span hydrophobic core of lipid bilayer
Usually consist of non-polar amino acids coiled into helices to form a protein
Integral proteins - hydrophilic ends
Interact with aqueous solution
Removal of an integral protein
Must break interactions between hydrophobic lipids and hydrophobic amino acids
To break the lipid, use detergent to dissolve lipid and stabalise membrane –> isolate integral membrane proteins
Membrane proteins can act as…
Receptor proteins - sense signals, e.g. from blood, and bind those receptors and transfer signals inside the cell
Cell identity markers - can be a sense of ‘self’
Linkers - provide links to other cells, sheets of tissue, or parts of CT e.g. tendons and BM
Enzymes - on surface of membrane, can catalyse enzymatic activity, e.g. break down glucose
Ion channels and transporter proteins - move molecules across cell membrane
Ion channels vs transporters
Transport diff things and use diff forces to do the transferring
Membrane - selective permeability
Membrane allows some substances to cross but excludes others because of the way specific molecules interact with lipid bilayer
What is the lipid bilayer (im)permeable to
Permeable to:
- nonpolar, uncharged molecules (O2, N2, benzene)
- lipid soluble molecules (steroids, fatty acids, some vitamins)
- small uncharged polar molecules (water, urea, glycero, CO2)
Impermeable to:
- large uncharged polar molecules (glucose, amino acids)
- ions (Na+, K+, Cl-)
Why are ions impermeable
Although they are small, they have an electric charge and so will be repelled by non-polar hydrophobic core of lipid bilayer - can only be moved through integral proteins
Diffusion
The random mixing of particles in a solution as a result of the particle’s kinetic energy
More molecules move away from an area of high conc to an area of low conc until conc across the membrane is equal
Factors affecting rate of diffusion
Greater diff in conc between 2 sides of membrane = faster rate
Higher temp = faster rate
Larger size of diffusing substance = slower rate
Increased SA available for diffusion = faster rate
Increased diffusion distance = slower rate
Thicker membrane = slower rate
Diffusion - size limit
Rate of diffusion sets limit on size of cells of about 20μm
What diffuses down concentration gradient
Non-charged molecules diffuse down conc gradients
Electrical gradient
Membrane potential
Electrochemical gradient
Movement of ions will be influenced by the electrochemical gradient
Passive transport
If there is a conc gradient and membrane is permeable, molecules will rapidly move until they reach an equal conc on both sides of membrane
Membrane charge
Across the cell membrane, there is a membrane charge which determines how molecules move across the cell
Movement of ions influenced by…
Sum of electrical and chemical (electrochemical) gradient
Selective permeability - conc gradient
Selective permeability of membrane enables a difference in conc (gradient) across the membrane to be established
Cells can maintain a difference in charged ions between the inside and outside of membrane, establishing gradient / membrane potential
Membranes - capacitors
Membranes mimic capacitors and can separate and store charge
Cytoplasm: -vely charged
ECM: +vely charged
Why is it important that the lipid bilayer is not permeable to ions
If membrane had holes in it that allows ions to diffuse down, you could never have a conc gradient
Crucial for establishing conc differences across the membrane
What do ion gradients represent
Stored charge and energy
Extracellular ion concentrations
High Na+: 150 millimoles
Low K+: 5 millimoles
High Cl-: 150 millimoles
Cytoplasmic ion concentrations
Low Na+
High K+
Low Cl-
How much resting energy do cells use to maintain conc and electrical gradients
~30% of resting energy
Accumulation of ions on one side of a membrane creates a…
Concentration difference
Electrochemical gradient - Na+
Product of conc gradient
Directed into the cell where there is a -ve membrane potential so electrical and conc gradient of Na+ will always be directed inside the cell
Na+ always want to move into cell down its electrochemical gradient
Osmosis
Diffusion of water across membranes
Net movement of water through a selectively permeable membrane from an area of high water conc to an area of lower water conc
When does osmosis occur
Only occurs if membrane is permeable to water but not to certain solutes, e.g. biological membranes
If an osmotic gradient exists…
Water will want to move to eliminate it
Electrochemical gradient - K+
K+ moves out of cell and down conc gradient until electrical gradient puts a brake on and slows it down –> reaches electrochemical equilibrium
Electrochemical gradient - Cl-
One vector with high Cl- conc wanting to pull it into the cell, but inside the cell is a -ve membrane potential - not attracted –> 2 opposing vectors; conc wanting to push in and electrical gradient wanting to push out
If membrane potential becomes less -ve than norm (-80mV), it depolarises and Cl- comes into cell. if it hyperpolarises, Cl- will leave the cell
What is used to establish gradients
Energy of metabolism, Na/K ATPase used to establish gradients and put in chemical work to create gradients that can then create other forms of energy to do numerous cellular processes
Membrane permeability to water (Pw)
Pw = Pd + Pf Where Pd = through lipid bilayer Pf = through water channel Pf > Pd Pf mediated by aquaporins (9 isoforms) Cells have diff Pw because they express diff aquaporin isoforms
Membrane permeability to water - properties
Pd:
Small
Mercury insensitive
Temp dependent (lipid fluidity)
Pf:
Large
Mercury sensitive
Temp independent
Osmotic pressure
The pressure applied by a solution to prevent inward flow of water across a semi-permeable membrane
Hypersmotic solution –> hyperosmotic solution
Types of transport across plasma membrane
Non-mediated transport
Mediated transport:
Passive transport
Active transport
Vesicular transport
Why are there a variety of processes for transport across plasma membrane
Lipid bilayer has certain permeability to diff molecules so there will be diff ways to get molecules across lipid bilayer
What type of transport do ions undergo
Non-mediated transport, as they don’t involve a transport protein
Why don’t non-mediated transport need integral membrane proteins
They’re permeable across hydrophobic core / bilayer
Non-mediated transport
Does not directly use a transport protein
Always passive diffusion
Important for absorption of nutrients and excretion of waste
Soluble, non-polar, hydrophobic molecules, e.g. O2, CO2, fatty acids
Diffusion through ion channels - speed
Ions don’t bind to channel pore, therefore transport is very fast (passive diffusion)
Diffusion through ion channels - process
Within the ion channel there are many charged (hydrophilic) amino acids, creating a pathway for ions to get through hydrophobic core
Channel forms a water-filled pore that shields ions from hydrophobic core of lipid bilayer
Water in ions flow through channel across bilayer down electrochemical gradient
Ionic selectivity
Large diversity of ion channels specific for a particular ion
Specific amino acids lining pore determine selectivity of channel to ions
By being selective to a particular ion, the channel can harness energy stored in diff ion gradients
Ionic selectivity - factors
Individual amino acids in protein backbone with a -ve charge effectively repel -ve ions going through the channel Shape of selectivity filter can discriminate between diff ions based on size of ions and amount of water they have around them --> specific filter that allows only one class of ions to go through it
If there was no lipid bilayer with a hydrophobic core…
Ions would be allowed to go through it and there wouldn’t be an ion gradient
Channels - gating
Channels contain gates that control opening and closing of the pore
Diff stimuli can control gate channel opening and closing
Channels - gating - stimuli
Voltage - a change in membrane potential can open an ion channel and cause generation of an action
Ligand binding - a molecule from blood binds to channel, causing it to open
Cell volume - can be sensed by cytoskeleton, causing it to stretch and open channel
pH - can change through differences in metabolism; if O2 deficit, can go into anaerobic metabolism –> can open ion channel
Phosphorylation - phosphorylate ion channels and open them to change properties of cells
Channels - open gate
Allows ions to flow down electrochemical gradient
Patch clamp technique
Used to measure ion channel function
Isolates a small patch of membrane that contains one of the channels - can see current flowing through channel
Patch clamp technique - current
Diffusion of > 1 million ions / sec through a channel generates a measurable current
Flow of ions is a pA (10^-12 amp) current
Current fluctuations represent conformational changes in channel structure associated with channel gating
Patch clamp technique - binding pocket
When molecule (e.g. acetyl choline) binds to closed channel, it causes it to open --> current starts to flow When molecule is removed, channel closes
Carrier mediated transport
Substrate to be transported directly interacts with transporter protein
For a molecule to be transported from one side to the other, must first bind to binding pocket, which induces a change in structure of that protein (e.g. binding of ion to protein)
Carrier changes its conformation and allows molecule to go across the membrane
Carrier mediated transport - rate
Since transporter undergoes a conformational change, transport rates are slower than those obtained for channels
Carrier mediated transport - properties
Similar to those of enzymes
Specificity - fits into binding pocket - specific for shape of a specific molecule
Inhibition - if inhibit/change the binding pocket of transporter, can block transport across - can be competitive or non-competitive
Competition - if 2 diff molecules can fit in binding pocket, it slows down rate of transport as they will compete for binding pocket
Saturation (transport max) - limited no of binding pockets; after a while if you keep increasing conc gradient, no effect
Do transport proteins catalyse chemical reactions
No, they mediate transport across cell membrane at a faster than normal rate
Mediated transport can be…
Passive (facilitated) or active
Glucose transport - saturation
Occurs until all binding sites are saturated
Facilitated diffusion of glucose - steps
- Glucose binds to transport protein (GLUT) - NOT a glucose channel or electrochemical gradient
- Transport protein changes shape. Glucose moves across cell membrane (down conc gradient)
- Kinase enzyme reduces glucose conc inside cell by transforming glucose into glucose-6-phosphate - conversion maintains conc gradient for glucose entry
Active transport
Uses energy to move molecules and ions against their concentration or electrochemical gradients
Forms of active transport
Primary:
- energy directly derived from hydrolysis of ATP
- typical cell uses 30% of energy (ATP) on primary active transport
- establishes ion gradients
Secondary:
- energy stored in an ionic conc gradient is used to drive active transport of a molecule against its gradient
Work together to do active transport
Primary active transporters: Na/K ATPase - overall mechanism
3 Na+ ions removed from cell as 2 K+ brought into cell
Pump generates a net current and is electrogenic
Primary active transporters: Na/K ATPase - steps
- Na+ binds to binding pocket (carrier). Binding converts ATP –> ADP, leaving a phosphate on the ion channel, so ATPase part of carrier protein attaches a phosphate group to it
- Phosphate has a -ve charge, so changes conformation of protein so sodium binding sites are opened up to outside of cell –> Na+ pushed out
- K+ binds, causing phosphate molecule to fall off –> changes conformation back to resting state where binding sites are now inside membrane –> K+ pushed in