Respiratory Viruses Flashcards

1
Q

Lower respiratory infections were the _____ global cause of deaths in 2016

A

4th

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2
Q

Lower respiratory infections were the _____ global cause of deaths in low income countries in 2016

A

1st

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3
Q

Leading infectious disease deaths in 2019

A

Lower Respiratory Infections
Diarrhoea
HIV/AIDS
Malaria

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4
Q

Leading causes of death in children <5 years old, 2019

A

Lower Respiratory Tract Infectious
Neonatal preterm birth
Neonatal asphyxia & trauma
Diarrheal diseases
Congenital birth defects

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5
Q

Leading causes of death in children
<5 years old - 1990 vs 2019

A

LRTI, diarrheal diseases, neonatal preterm death, measles all greatly decreased
Scientific breakthroughs have diminished affects of infectious diseases

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6
Q

Principle viral aetiological agents of LRI

A

Influenza A,B, (C)
RSV A & B
Human metapneumovirus (hMPV)
Human parainfluenza virus types 1-3
Adenovirus
Picornavirus
Coronavirus
Bocavirus

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7
Q

Characteristics of Viral Respiratory Infections of Known Aetiology

A

Coryza
Sore throat
Headache
Cough
Activity restriction
Lower respiratory symptoms
(NOT SPECIFIC)

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8
Q

What family do Influenza A, B, C, D, Thogovirus and Isavirus belong to

A

Orthomyxoviridae

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9
Q

What are the usual epidemic strains of influenza?

A

H1N1
H3N2

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10
Q

What percentage of the US population get the flu and how many are hospitalised?

A

3-11%
380,000

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11
Q

High risk groups for influenza

A

People ≥ 65
Nursing home residents
Children 6-23 months
Chronic heart or lung diseases
Immunodeficiencies

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12
Q

Influenza symptoms

A

fever (usually high)
headache
extreme tiredness
dry cough
sore throat
runny or stuffy nose
muscle aches (myalgia)
Stomach symptoms, such as nausea, vomiting, and diarrhea, children>adults

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13
Q

Influenza complications (3)

A

Primary viral pneumonia
Pneumonia dehydration
Worsening of chronic medical conditions (eg congestive heart failure, asthma, diabetes)

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14
Q

Transmission of influenza

A

person to person - respiratory droplets from coughing and sneezing
touching infected surfaces and then mouth or nose

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15
Q

When is influenza infectious

A

1 day before - 5 days after symptoms

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16
Q

Incubation period of influenza

A

24 hours to 4-6 days

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17
Q

Disease duration of influenza

A

7-14 days
Up to 3 weeks

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18
Q

Reservoir of influenza A viruses

A

Ducks?
Don’t kiss pigs
Fowl, horse, whales, seals (birds -> mammals -> humans?)

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19
Q

What responses are induced following infection and which cells?

A

T cell response
CD4+
CD8+

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20
Q

What is T cell role in protection against influenza?

A

High CD8+ T cells
Good protection against re-infection with same strain - life long immunity
Little resistance to 2nd infections with new variants - virus can mutate

21
Q

Mechanisms of influenza disease(2)

A

Systemic
Local

22
Q

_______ is essential for virus infectivity

A

haemagglutinin cleavage

23
Q

Influenza differential pathology due in part to_______

A

Haemagglutinin cleavage site

24
Q

Timeline of human flu pandemics

A

1918 - Spanish flu (H1N1) 20-50 million dead
1957 - Asian flu (H2N2)
1968 - Hong Kong flu (H3N2)
1977 - Russian flu (H1N1)
1997 - first Avian flu
2009 - Swine flu (H1N1)

25
Antigenic Drift
Genetic mutations HA gene changes -> antigen it encodes changes shape -> antibodies that normally bind to it no longer can RNA polymerase = error prone :( Exposed to new strains - virus more fit to replicate => endemic
26
Antigenic shift
Genetic change - reassortment +/- genetic mutations - that enables flu strain to jump from one animal specifies to another => Pandemic
27
3 ways antigenic shift can occur
1) Aquatic bird passes strain to intermediate host, human passes strain of same virus to pig. Genes from both strains mix and form new strain which can spread from intermediate host (like shuffling a deck of card). Genome segments mix 2) Bird strain can jump directly to human without undergoing genetic change 3) Bird strain can jump directly to intermediate host to human without undergoing genetic change
28
Avian Flu
1997 - avian influenza passed directly from birds to humans Hong Kong 1997 variant - avian H5N1 virus - infected 18 people, killed 6 (high mortality rate) ~ 30% Virus was poorly transmissible between humans
29
Clinical features of confirmed human cases of avian influenza A (H5N1)
Fever Cough Pulmonary infiltrates Exposure to ill poultry Shortness of breath Diarrhoea Headache Myalgia
30
Influenza pandemic preparedness
Sentinel diagnostic labs worldwide Anti-viral stockpiling - Oseltamivir, Zanamivir (limited supplies) Vaccine stockpiling - Only 8 countries with manufacturing facilities
31
Swine Flu Pandemic 2009 - strain
A/H1N1
32
Swine Flu Pandemic 2009 - transmission
Unusual cocktail of avian, swine and human viruses Pigs harbour several flu viruses, they act to form new strain. Transmission via inhaling **viral particles**
33
Swine Flu Pandemic 2009 - symptoms
High fever Cough Breathing difficulties Loss of appetite
34
Pandemic
2 or more WHO regions affected (Spread not severity is decisional criterion) **Government must respond**
35
Swine Flu Pandemic 2009 - High risk groups (5 chronic diseases + 5 others)
chronic lung, heart, kidney, liver, neurological disease immunosuppression diabetes mellitus patients who have had drug treatment for past three years pregnant women people aged 65 and older
36
Epidemic vs pandemic
Epidemic - disease that affects a large number of people within a community, population, or region Pandemic - disease that's spread over multiple countries or continents
37
What sort of epidemic is influenza?
Seasonal
38
Immune Response to Influenza
Virus attacks cilia in LRT Innate response Interferon response Virus eliminated 6-10 days Antibody response Antibodies prepare body for re infection of same strain
39
Systemic Infection
Can affect many organs Enzyme found on all cells High pathology
40
Local infection
Affects local organs e.g respiratory and GI in birds Enzyme only in cells of the lungs and GI tract Low pathology
41
HA cleavage site cleaved by _______ from HA0 to one of HA1-HA11
Cellular protease
42
Influenza virus morphology
**Envelope virus** - derived from infected cell membrane **Surface glycoproteins** - **Neurominidase** (tetramer), **HA** (homotrimer) **Negative strand RNA** **M2 protein** - forms pore between cell membrane and viral envelope **8 genomic segments** - replication and survival **Matrix protein** - gives morphology/shape **RNA dependent RNA polymerase complex** made up of PB1, PB2 and PA **HA** is surface cell receptor; 18 types **NA** cleaves terminal sal acid; 11 types Influenza is endocytosed -> reduces pH -> change in HA -> movement to juxtaposition of endosomal membrane -> Viral envelope able to fuse with cell membrane - M2
43
Pattern of infection
No prior antibodies = surge = pandemic People build resistance but virus may mutate Epidemics occur Pandemic again
44
Interpandemic period
Time between 2 pandemics
45
Define endemic
Infection is constantly present or maintained at baseline
46
Incubation period
Period between infection and display of symptoms, in which the virus is replicating.
47
Effect of Covid-19 lockdown on other respiratory viruses
Implementation of masks, social distancing and lockdown led to a dramatic decrease n cases of influenza.
48
Define epidemic threshold
Indicates the level of incidence above which a disease requires an urgent response.
49
Reye’s syndrome
Reye’s syndrome, a complication of influenza in children <16 years, however its neurological and thought to be associated with high-dose aspirin