QF-PCR Flashcards

1
Q

QF-PCR

A

Quantity Fluorescence-PCR:

  • newborn screening for aneuploidies
  • different coloured fluorophores attached to different STR
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Aneuploidy

A

Gain or loss of a chromosome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Monosomy

A

Loss of a chromosome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Disomy

A

Two copies of a chromosome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Trisomy

A

Three copies of a chromosome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Non-disjunction

A
  • failure of one or more pairs of homologous chromosomes or sister chromatids to separate normally during nuclear division
  • usually resulting in an abnormal distribution of chromosomes in the daughter nuclei
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Turner Syndrome

A
  • Monosomy X
  • karyotype: 45, X
  • viable fetus = female phenotype
  • webbed neck, loss of ovarian function
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Klinefelter Syndrome

A
  • Disomy
  • Karyotype: 47, XXY
  • Viable fetus = phenotype as male
  • small testes/ penis, breast growth
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Trisomy X

A
  • Karyotype: 47, XXX
  • most common female sex chromosome aneuploidy
  • taller than average females
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

XYY syndrome

A
  • Karyotype: 47, XYY
  • viable fetus = phenotype as male
  • tall, enlarged head, learning disability
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Patau Syndrome

A
  • Trisomy Syndrome
  • Karyotype: 47, XX+13 or 47, XY+13
  • cleft palate, heart and CNS defects
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

3 Trisomies that are most compatible with life

A

Patau Syndrome (trisomy 13)
Edwards Syndrome (trisomy 18)
Down Syndrome (trisomy 21)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Edwards Syndrome

A
  • Karyotype: 47, XX+18 or 47, XY+18
  • partial trisomy (half extra chromosome) is less severe than full trisomy
  • feeding and breathing problems
    ~90% die within a year
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Downs Syndrome

A
  • Karyotype: 47, XX+21 or 47, XY+21
  • characteristic craniofacial abnormality
  • childhood leukemia
  • early onset Alzheimer’s disease
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

D8S1179

A
  • “microsatellites” or short-tandem repeats
  • on chromosome 8
  • TCTA can be repeated 7-20 times
  • has >14 alleles
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

How can STR be used for paternity ?

A

Mom: 12 TCTA allele/ 7 TCTA allele

Dad: 11 TCTA allele/ 9 TCTA allele

=

Child: 7 TCTA allele/ 9 TCTA allele

17
Q

QF-PCR results of monosomy

A

One peak with regular height

18
Q

QF-PCR of monoallelic disomy

A

One peak that is twice as high (2 copies of the same allele)

19
Q

WIP QF-PCR of diallelic disomy

A

Two peaks with regular heights (different copies of

20
Q

QF-PCR results for TAF9L control

A
  • On chromosomes 3 and X

Female: 2 peaks on chromosome 3 and 2 peaks on chromosome X = 1:1

Male: 2 peaks on chromosome 3 and 1 peak on chromosome X = 2:1

21
Q

QF-PCR results for AMEL control

A
  • On chromosomes X and Y encodes for amelogenin

Female: 1 peak

Male: 2 peaks

22
Q

QF-PCR results for SRY

A
  • indicates presence of Y chromosome

Female: no peak

Male: 1 peak