polypeptide hydrolysis Flashcards
proteases
digestive enzymes that catalyze the hydrolysis of peptide bonds
nucleophile
an atom with a lone pair of electrons available to share, “nucleus lover”
electrophile
electron-deficient groups which accept electrons from nucleophile to create bond, “electron lover”
what makes a nucleophile strong or weak
Strong: bases, negatively charged molecules, more lone pairs
weak: acids, few lone pairs
How can an atom use its lone pairs if it has them?
- H-bond acceptor
- base if it captures H+
- nucleophile when it shares a lone pair with another electron deficient atom to make a new bond
nucleophilic substitution / displacement
incoming nucleophile X attacks target atom C to displace leaving group Y
nucleophilic addition
nucleophile X is added to C-Y to form X-C-Y
leaving group in nucleophilic displacement of amino acids
atom that is displaced from the main part of molecule, must be able to accept electrons
curly arrows
represent movement of electron pair, draw arrows in the direction electrons are moving
transition state
intermediate configuration of a molecule where the potential energy has a maximum value
Basis of chemical reactivity in hydrolysis
arises from unbalanced valence electrons, polar molecules