Pharmacogenetics Flashcards

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1
Q
A
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2
Q

What is meant by the term “genomics”?

A

relating to the genome

i.e. total DNA/RNA

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3
Q

What is the difference between pharmacokinetics and pharmacodynamics?

A

pharmacokinetics:

this is what the body does to the drug

pharmacodynamics:

this is what the drug does to the body

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4
Q

What is the difference between stratified medicine and personalised medicine?

A

stratified medicine:

selecting therapies for groups of patients with shared biological characteristics

personalised medicines:

therapies are tailored to the individual

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5
Q

What is the difference between the terms “germline” and “somatic”?

A

germline:

another word for hereditary

somatic:

acquired and not hereditary as it is not in germline cells

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6
Q

What is meant by ‘pharmacogenetics’?

A

the study of inherited genetic differences in drug metabolic pathways which can affect an individuals response to drugs

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7
Q

Why is pharmacogenetics important in medicine and patient care?

A

differences in drug metabolic pathways may result in a positive response to a drug therapy or an adverse drug reaction

it also plays an important role in offering a stratified approach to improve patient care

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8
Q

What are the genetic variations that may affect drug metabolism?

What is the outcome?

A
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9
Q

What is meant by a single nucleotide polymorphism?

A

a common type of genetic variation that may change protein structure/activity

e.g. missense changes

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10
Q

What types of patterns of inheritance are seen in genetic variations that affect drug metabolism?

A

autosomal recessive:

  • most severe side effects are seen in those homozygous for the variant
  • heterozygote is less affected or unaffected

autosomal dominant:

  • a single copy of the variant is enough to cause the problem

X-linked recessive:

  • males are carriers of the variant at risk

mitochondrial inheritance:

  • inherited from the mother only
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11
Q

What 5 areas of drug metabolism are affected by genetic variation?

A
  1. absorption
  2. activation
  3. altered target
  4. catabolism (break down)
  5. excretion

drugs have complex metabolic pathways and single genes are unlikely to explain all variability

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12
Q

What are the consequences of giving someone the “wrong” drug?

A
  1. the drug may remain inactive and there will be a poor/no response
  2. the drug may be over-active and excess toxins lead to an adverse reaction
  3. financial costs to health services
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13
Q

What is a problem relating to pharmacogenetics and cancer treatment?

A

most cancer drugs have response-rates of 20% due to genetic variation in the tumour of the patient

many patients receive toxic treatments without benefit

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14
Q

How can genetics help in prescribing drugs?

A

if predictive biomarkers are analysed, treatment response can be predicted

this leads to allocation of the ideal treatment the first time round

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15
Q

What are the benefits of using genetics to determine a patient’s response to a particular drug?

A
  1. change dose of drug where appropriate
  2. use a different drug that works better and/or has reduced toxicity
  3. guide new targeted drug development
  4. reduce financial costs of inappropriate treatment
  5. allow for stratified and personalised medicine
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16
Q

How does thiopurine methyltransferase interact with some drugs?

A

TPMT inactivates certain drugs:

azathioprine:

  • immunosuppressant used in organ transplantation and autoimmune disease

6-mercaptopurine & 6-thioguanine:

  • used in chemotherapies
17
Q

How do thiopurine methyltransferase gene polymorphisms affect protein activity?

A

TPMT gene polymorphisms reduce TPMT protein activity

severe toxicity if both copies of the gene have the variant

18
Q

What causes cystic fibrosis?

What is the purpose of Ivacaftor therapy?

A

biallelic mutation of the CFTR gene

Ivacaftor therapy can significantly improve symptoms

e.g. lung function, reduce sweat chloride concentrations

19
Q

How does Ivacaftor therapy affect CFTR channel activity?

In what genotype is improvement seen with this therapy?

A

therapy enhances CFTR channel activity , i.e. increases probability of an open channel

significant improvement seen in patients with G551D genotype (hetero- or homozygous)

no improvements are seen in homozygous F508del

20
Q

What is the use of succinylcholine?

A

it is related to the poison curare

it is a muscle relaxant used in anaesthesia (to stop breathing) and usually wears off after a few minutes

21
Q

In which patients should succinylcholine not be given to?

A

Rare BCHE gene variant homozygotes have reduced butyrylcholinesterase activity

the effects of succinylcholine may last for an hour or more and there is a risk of death if artificial ventilation is not continued

22
Q

What is the role of mitochondrial MT-RNR1 gene?

A

it encodes mitochondrial 12s rRNA

23
Q

What is aminoglycoside induced hearing loss?

What mutation is present?

A

G > A mutation at nucleoside position 1555 causes non-syndromic hearing loss at later ages

mutation changes the structure of the rRNA to resemble E-coli 16S rRNA

aminoglycosides are more likely to bind to patients rRNA, leading to an increased risk of hearing loss at a younger age

24
Q

How is aminoglycoside induced hearing loss inherited?

A

through maternal inheritance

this accounts for 30% of tendency to aminoglycoside toxicity

25
Q

What is the use of Warfarin?

What happens if the dose of warfarin is too low or too high?

A

it is an oral anticoagulant that is used to reduce embolism/thrombosis

it decreases the availability to vitamin K

dose too low - patients remains at risk

dose too high - risk of haemorrhage

26
Q

How does the optimum warfarin dosage vary between individuals?

A

optimum warfarin dosage varies 20x between individuals

27
Q

What genes are involved in the genetic variabilty of warfarin activity?

A

CYP2C9 (cytochrome p450 family)

VKORC1 (vitamin K oxidoreductase complex-1)

these genes explain 50% of genetic variability of warfarin activity

28
Q

How can cancer treatment and pharmacogenetics be used in the future?

A

cancers contain genetic variations that are not present in germline DNA

these variations are potential targets

this would increase overall response rates and survival and reduce treatment failure and toxicities

29
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A
30
Q

What cancer is HER2 associated with?

What treatment do these patients benefit from?

A

20% of breast cancers have over-expression of HER2 (human epidermal growth factor receptor 2)

these patients benefit from trastuzumab (herceptin) - a monoclonal antibody to the HER2 receptor

31
Q

What type of cancer is notoriously resistant to chemotherapy treatment?

What mutation is commonly present?

A

melanoma

50% of melanomas have a somatic mutation in the BRAF gene

32
Q

What is the new treatment for melanoma and how effective is it?

A

a new targeted therapy Vemurafenib shows a 48% response rate compared with 5% for standard chemotherapy

It is a BRAF inhibitor

33
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A