Pedigree Mendelian Genome Trouble Flashcards

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0
Q

Which pedigree type can skip generations?

A

Autosomal recessive

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1
Q

Outsider rules for autosomal dominant and recessive

A

Dominant: unknown parents are assumed to be heterozygous
Recessive: unknown parents are assumed to be homozygous normal

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2
Q

Are males and females equally affected for autosomal recessive disorders? X-linked recessive?

A

Autosomal recessive: yes

Xlinked recessive: females more likely to be carriers than displayers of phenotype

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3
Q

What cell cycle stage does the Mendel’s two laws take place in?

A

Meiosis for both

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4
Q

What is Mendel’s first law of segregation state?

A

At meiosis, alleles separate from eachother so that each gamete receives 1 copy of each allele

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5
Q

What does Mendel’s second law state?

A

Segregation of each set of alleles in meiosis is independent of segregation of other alleles

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6
Q

2 principal factors that determine the inheritance patterns seen in single gene disorders

A
  1. Quality of phenotype

2. Location of gene locus

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7
Q

Penetrance

A

Probability that a gene will have phenotypic expression at all.

“All or nothing”

Gene is expressed or it isn’t.

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8
Q

What is a threat to Penetrance?

A

Age dependent mechanism.

Likelihood manifesting trait dep on age

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9
Q

5 threats to expressivity

A

PMSES

  1. Phenocopies
  2. Modifier genes
  3. Stochastic effects
  4. Environmental factors
  5. Sex influenced/ limitations
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10
Q

Allelic heterogeneity

A

Different Mutations of same gene/locus can similar phenotype

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11
Q

Pleiotropy

A

1 gene mutation/defect can cause multiple phenotypes

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12
Q

What two factors produce phenotype?

A

Genotype and environment

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13
Q

SNP error frequency

A

1 SNP every 1000 bp = each individual ~ 3 mil bp different

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14
Q

Is random variation in genome beneficial/harmful?

A

Almost always harmful

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16
Q

Minisatellite (indel)

A

Type of variation in genome

VNTR (variable # tandem repeats)
Randomly repeated 10-100 bp
Imp for fingerprinting

17
Q

Copy number variation (CNV)

A

Type of variation in genome

Variation in segments of genome from 200bp-2Mbp
Can range from 1 additional copy to many (Ie: A-B-C-C-D)
Primary type of structural variation

17
Q

Categories of genomic DNA sequencing and frequencies

A
  1. Single copy sequences (50%)
  2. Repetitive DNA (40-50%)
  3. Genes (introns, exons, flanking seq) (20-25%)
  4. Translated/protein coding seq (1.5%)
18
Q

Microsatellite (indel)

A

Type of variation in genome

STRP (short tandem repeat polymorphisms)
Di, tri, tetra nucleotide repeats
5x10^4 per genome

19
Q

Types of repetitive DNA that exist in hu genome

A
  1. Tandem repeats

2. Dispersed repetitive elements

20
Q

Types of Dispersed repetitive elements

A
  1. Alu family
    • ie: short interspersed repetitive elements (SINES)
  2. L1 family
21
Q

Tandem repeats

A

aka “Satellite DNA”
Spread throughout the genome
Found on heterochromatic regions on ch 1, 9, 16, y

Ie: alpha satellites

22
Q

Describe estimated number of genes

A

25,000-30,000

23
Q

Retrotransposition

A

These repeats may cause insertional inactivation of genes and may facilitate aberrant recombination events btwn diff copies of dispersed repeats, leading to disease

Ie: nonallelic homologous recombination (NAHR)

24
Q

List diff types of hu genes

A
  1. Protein coding
  2. RNA coding
  3. Pseudogenes
25
Q

1q21.1 duplication and deletions result in what?

A

Dup: macrocephaly, autism
Del: microcephaly, schizophrenia

26
Q

DUF1220

A

a protein domain that cause evolutionary advantage (inc in brain size) -> inc 1q21.1instability -> inc in DUF1220

27
Q

Prior to meiosis, cells complete how many rounds of replication?

A

One (s phase)

28
Q

After initiation of meiosis, cells then undergo how many rounds of chromosome segregation?

A

2 successive rounds

29
Q

Synapsis

A

Homologous ch. align along their lengths and pair at corresponding DNA seq.

30
Q

Bivalents

A

Pair of homologous chromosomes (during Synapsis)

31
Q

Synaptonemal complex does what?

A

Promotes inter homolog intxn

32
Q

Chiasmata

A

Physical links btwn homologs during reciprocal recombination

33
Q

Random segregation of homologous ch gives rise to how many diff possible combinations?

A

8x10^6
or
2^23 (2 homologs of each 23 ch)

34
Q

Nondisjunction

A

Pairs of ch fail to segregate properly

35
Q

Nondisjunction events are related to what two factors?

A

Position and numbers of Chiasmata

36
Q

What happens if recombination occurs too close to centromere? Too far?

A
  1. Cause Spindle attachments, segregation during meiosis 1 -> crossing over less effective -> inc risk of ND
  2. Homologs become entangled -> reduced/absent recombination and inc risk of ND
37
Q

What happens to gametes when ND occurs in meiosis I? Meiosis II?

A

l. All gametes abnormal

II. Half gametes normal, half abnormal

38
Q

Triploidy

A

Extra ch in all 23 pairs ( ie, 69, XXX)