PDC and TCA Cycle Flashcards

1
Q

What reaction for TCA cycle?

A

Acetyl CoA + 3 NAD + FAD + GDP + P + 2 H20 –> CoA + 2 CO2 + 3 NADH + 3H + FADH2 + GTP

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2
Q

Where do most of the potential energy for the cell come from in the TCA cycle?

A

reduced co enzymes, you get 3 NADH (6e) and 1 FADH2 (2e)

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3
Q

What are the direct source of energy from the TCA cycle?

A

direct GTP

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4
Q

Where is NAD+ is derived from?

A

Niacin; the nicotinamide portion does the redox chemistry

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5
Q

How does pyruvate get into the mitochondrion?

A

because its polar and charged, it cannot get through passively so it must use a mitochondrial pyruvate arrier

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6
Q

How does the structure of the mitochondria aid in the exchange of metabolites?

A

the inner membrane has components of the ETC where the reduced coenzymes are fed directly in

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7
Q

How does the cell use the potential energy in reduced coenzymes to fuel ATP synthesis?

A

the reduced coenzymes need to be oxidized (oxidative phosphorylation) which will make a protein gradient to help fuel ATP synthesis

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8
Q

What is the structure of the Pyruvate dehydrogenase complex (PDC)?

A

three complexs that are non covalently associated (proximity and orientation so rate of product formation increases)

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9
Q

What are the 5 cofactors of the pyruvate dehydrogenase?

A

coenzyme A (coA), Lipoamide (lipoic acid), TPP, NAD+, FAD

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10
Q

Lime soaked corn

A

releases protein bound niacin upon heating so allows allows for absorption into the body

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11
Q

What is FAD derived from?

A

dietary Riboflavin (the flavin does the redox chemistry)
-in reduction there is a radical intermediate

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12
Q

Where does COA come from?

A

CoA dervied from dietary pantothenic acid

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13
Q

Where does TPP come from?

A

dietary thiamine (fruits and veggies
polished rice is thiamine deficient and whole rice is thiamine rich

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14
Q

What kind of molecule is acetyl-CoA?

A

its a thioester; high energy molecule because hydrolysis products result in much lower energy level than reactants

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15
Q

Is pyruvate dehydrogenase complex a near or far from eq rxn?

A

FAR

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16
Q

What is the first reaction of the PDC enzyme?

A

-2 C group from pyruvate is transferred onto TPP to yield a Hydroxyethyl-TPP intermediate; CO2 is released and will be dissolved and carried through blood as bicarbonate
-group transfer

17
Q

What is the second reaction of the PDC enzyme?

A

the 2C group of Hydroxyethyl-TPP is transferred onto the lipoamide to make acetyl-dihydrolipoamide

18
Q

What is the third reaction of the PDC enzyme?

A

-CoA is a cofactor that comes in and the 2C group with carbonyl attaches to the CoA making acetyl CoA
-the lipoamide emerges as a fully reduced (needs 2e- and 2 H+ to be with drawn to repeat process)

19
Q

What cofactor transfer is involed in the third enzyme of the PDC enzyme

A

NAD+ –> NADH + H+

20
Q

What is the overall reaction of PDC Complex?

A

Pyruvate + NAD+ + CoA –> Acetyl CoA + CO2 + NADH + H+