Patterning + Differentiation (lec 2/3/4) Flashcards

1
Q

What are the two major types of cleavages?

Briefly describe them

A

1) Holoblastic: complete; whole embryo involved

2) Meroblastic: incomplete; cleavage occurs at certain regions; not the whole embryo

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2
Q

What are the two types of holoblastic cleavages?

Briefly describe them.

A

A) Isolecithal - Sparse, evenly distributed yolk
B) Mesolecithal - Moderate vegetal yolk disposition

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3
Q

What are the two types of meroblastic cleavage?

A

A) Telolecithal - Dense yolk throughout most of cell
B) Centrolecithal - yolk in center of egg

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4
Q

What are the four types of isolecithal cleavages?

A

1) Radical cleavage
2) Spiral cleavage
3) Bilateral cleavage
4) Rotational cleavage

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5
Q

What are the two types of telolecithal cleavages?

A

1) Bilateral cleavage
2) Discoidal cleavage

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6
Q

Match the different types of movements to their descriptions:

1) Invagination
2) Involution
3) Ingression
4) Delamination
5) Epiboly

A) Migration of individual cells from the surface into the embryo’s interior. Individual cells become mesenchymal (i.e., separate from one another) and migrate independently.

B) Movement of epithelial sheets (usually ectodermal cells) spreading as a unit (rather than individually) to enclose deeper layers of the embryo. Can occur by cells dividing, by cells changing their shape, or by several layers of cells intercalating into fewer laters; often, all three mechanisms are used.

C) Infolding of a sheet (epithelium) of cells, much like the indention of a soft rubber ball when it is poked.

D) Spitting of one cellular sheet into two more or less parallel sheets. While on a cellular basis it resembles ingression, the result is the formation of a new (additional) epithelial sheet of cells.

E) Inward movement of an expanding outer layer so that it spread over the internal surface of the remaining external cells.

A

Invagination: Infolding of a sheet (epithelium) of cells, much like the indention of a soft rubber ball when it is poked.

Involution: Inward movement of an expanding outer layer so that it spreads over the internal surface of the remaining external cells.

Ingression: Migration of individual cells from the surface into the embryo’s interior. Individual cells become mesenchymal (i.e., separate from one another) and migrate independently.

Delamination: Spitting of one cellular sheet into two more or less parallel sheets. While on a cellular basis it resembles ingression, the result is the formation of a new (additional) epithelial sheet of cells.

Epiboly: Movement of epithelial sheets (usually ectodermal cells) spreading as a unit (rather than individually) to enclose deeper layers of the embryo. Can occur by cells dividing, by cells changing their shape, or by several layers of cells intercalating into fewer layers; often, all three mechanisms are used.

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7
Q

What are the three major primary axes?

A

1) Midsagittal plane
2) Horizontal plane (lateral)
3) Transverse plane (cross section)

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8
Q

Match the different germ layers (+cells) to what they develop into:

1) Ectoderm (outer layer)
2) Mesoderm (middle layer)
3) Endoderm (internal layer)
4) Germ cells

A) digestive tube (stomach cell), pharynx (thyroid cell), respiratory tube (lung cell)

B) outer surface (skin), central nervous system, neural crest (pigment cell)

C) male (sperm), female (egg)

D) dorsal (notochord), paraxial (bone tissue), intermediate (tubule cell of the kidney), lateral (red blood cells), and head (facial muscle)

A

Ectoderm (outer layer): outer surface (skin), central nervous system, neural crest (pigment cell)

Mesoderm (middle layer): dorsal (notochord), paraxial (bone tissue), intermediate (tubule cell of the kidney), lateral (red blood cells), and head (facial muscle)

Endoderm (internal layer): digestive tube (stomach cell), pharynx (thyroid cell), respiratory tube (lung cell)

Germ cells: male (sperm), female (egg)

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9
Q

(T/F) The cells that form gill supports in fish form the middle ear bones in mammals.

A

True!

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10
Q

In adult fish, PHARYNGEAL ARCH (branchial arch) cells form the _________ jaws and ______ arches.

In amphibians, birds, and reptiles, these same cells form the _______ bone of the _______ jaw and the _______ bone of the ______ jaw.

In mammals, the _______ has become internalized and forms the ______ of the middle ____. The ________ bone retains its contact with the _______, becoming the _______ of the middle ear.

A

hyomandibular; gill

quadrate; upper, articular; lower

quadrate; incus; ear
articular; quadrate; malleus

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11
Q

(T/F) Edwin Conklin mapped the fates of early cells of the tunicate (styela partita) using the fact that in embryos of this species many of the cells can be identified by their different-colored cytoplasms. Yellow cytoplasm marks the cells that form the red blood cells.

A

False!

Yellow cytoplasm marks the cells that form the trunk muscles.

*at the 8-cell stage, two of the eight blastomeres contain the yellow cytoplasm, which were present in the newly formed trunk muscles at the early larval stage.

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12
Q

An older cell fate mapping technique is using the vital dye staining. Briefly describe this process.

A

Agar chips with dye are implanted in different parts of the embryo (in the example given, it was an amphibian embryo).

This allowed the the dyed cells to be traced through the developmental phases of the embryo.

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13
Q

A more recent cell fate mapping technique is using a fluorescent dye. Briefly describe this process using the zebrafish embryo example.

A

In zebrafish embryo, specific cells were injected with a fluorescent dye that does NOT DIFFUSE FROM THE CELLS. The dye was THEN ACTIVATED BY LASER in a small region (~5 cells) of the late-cleavage-stage embryo.

After formation of the CNS had begun, the cells that contained the activated dye were VISUALIZED BY FLUORESCENT LIGHT. The fluorescent dye was seen in cells that generate the forebrain and midbrain.

*In this process, the animals can be GMO and make their own dyes at certain times.

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14
Q

Genetic markers can be used as cell lineage tracers (fate mapping). Briefly describe this process using the quail and chick example.

A

Cells from a particular region (that produces cells that populate the neural tube) of a 1-day QUAIL embryo have been GRAFTED into a similar region of a 1-day CHICK embryo. After several days, the quail cells can be seen by using an ANTIBODY TO QUAIL-SPECIFIC PROTEINS.

The neural crest cells that gave rise to the pigment migrated into the wing epidermis and feathers of a chick resulting from transplantation of a trunk neural crest region from an embryo of a PIGMENTED STRAIN OF CHICKENS into the SAME REGION of an embryo of an UNPIGMENTED STRAIN.

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15
Q

How can chick and quail cells be distinguished besides using antibodies for quail/chick specific proteins?

A

They can be also distinguished by the heterochromatin of their nuclei.

Quail cells have single large nucleus, while chick cells have a diffused nuclei.

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16
Q

Fate mapping with transgenic DNA shows that the _______ ____ is critical in making the gut neurons.

How was this discovered?

A

Neural Crest

A chick embryo contained an active gene for green fluorescent protein, causing it to express GFP in every cell. The region of the neural tube and crest was excised and transplanted into a similar position in an unlabelled wild-type embryo. The neural crust cells (that expressed the GFP) were near the foregut.

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17
Q

(T/F) The vertebrates—fish, amphibians, reptiles, birds and mammals—all start development very differently because of the enormous differences in the size of their eggs. They remain different throughout the whole process.

A

False!

Though they all start development very differently because of the enormous differences in the size of their eggs, there are certain stages where their embryos are VERY SIMILAR as the organs developed then have critical functions.

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18
Q

(T/F) Animals in adult form can look very different from one another, but look very similar during embryogenesis.

A

True!

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19
Q

Barnacles and shrimp both exhibit a distinctive ______ stage (the nauplius) that underscores their common ancestry as _________ __________.

Before this discovery, barnacles were classified as ___________, which are sedentary, differing in body form and lifestyle from the free-swimming adult shrimp.

A

Larval; crustacean arthropods.

Mollusks

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20
Q

Tunicates are also known as _____ _______.

Larval stage of ascidian tunicate, C. intestinalis, reveal its common ancestry with other __________ as they had a dorsal ______ _____ and a _____________.

Before this, they were grouped as ________.

A

sea squirt

chrodates; nervous sytem; notochord

mollusks

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21
Q

What have phylogenetics first confirm and then demonstrate about sea squirts?

What does this mean for tunicates?

A

Phylogenetics first confirmed that sea squirts were chrodates and then demonstrated that they are the closest invertebrate relative to verterbrates!

This means that tunicates lost SOMITES, which cephalochordates and vertebrates have.

22
Q

What distinctive features did a late jurassic (~150mya) fossil of Archaeopteryx show?

A

A reptilian skeleton and avian feathered wings!

23
Q

What was the first animal that was first hypothesized to walk on land?

How many years ago?

What characteristics do its fossils and reconstructions reveal?

A

Tiktaalik roseae

375 mya

They reveal characteristics of both fish fins and amphibian forelimbs, among other characteristics.

24
Q

(T/F) The tree of life is an illustration of the major branches of life.

A

True!

25
Q

Describe homology and analogy using human arm, seal limb, bird wing and bat wing.

A

Homology: Human arm, seal limb, bird wing, and bat wing were all derived from a COMMON TETRAPOD ANCESTOR and thus are homologous as forelimbs.

Analogy: The adaptations of bird and bat forelimbs to flight EVOLVED INDEPENDENTLY of each other, long after the two lineages DIVERGED FROM THEIR COMMON ANCESTOR. Thus, the wings are analogous!

26
Q

What are the similarities and differences between the development of bat and mouse forelimbs?

A

Both limbs start as WEBBED APPENDAGES, but the webbing between the mouse’s digits dies (APOPTOSIS) at embryonic DAY 14! The webbing in the bat forelimb does not die and is sustained as the fingers grow!

*bat has 5 homologous digits like mouse

27
Q

Why is the differentiation of trochoblast (ciliated) cells of the snail PATELLA starting at 16-cell stage a great example of autonomous specification?

A

Even when a trochoblast cell is isolated from the 16-cell stage and cultured in vivo, it divides and becomes ciliated correctly.

They don’t have a micro environment and they still become what they would be in the presence of a micro environment!

28
Q

Match the following terms to their definition:

1) Autonomous specification
2) Conditional specification
3) Syncytial specification

A) Transcription factors form gradients within a large cell that contains many nuclei. The nuclei express genes depending on the ratios of these TFs.

B) Transcription factors localized in cytoplasm and are inherited by the cells containing that cytoplasm

C) Cells are influenced by their neighbours. Paracrine factors from one cell are received by another cell and activate transcription factors in that cell.

A

Autonomous specification: Transcription factors localized in cytoplasm and are inherited by the cells containing that cytoplasm (not influenced by neighbouring cells)

Conditional specification: Cells are influenced by their neighbours. Paracrine factors from one cell are received by another cell and activate transcription factors in that cell (non-autonomous).

Syncytial specification: Transcription factors form gradients within a large cell that contains many nuclei. The nuclei express genes depending on the ratios of these TFs (no cellularization yet; just a big cytoplasm).

29
Q

While autonomous specification predominates in ____________, conditional predominates in ___________ and a few ___________, syncytial predominates in most __________ classes.

The cleavages seen in autonomous are _____________, while the cleavages seen conditional and syncytial are ___________ (what does it mean?).

A

Invertebrates; vertebrates and a few invertebrates; insect (there’s lots of exceptions to this - they are not strict rules!)

Invariant; variant

invariant: unchanging - predictable + consistent
variant: random

30
Q

(T/F) In syncytial specification, the nucleus divides with the membrane, producing daughter cells. After cellularization, only autonomous specification is seen.

A

False!!

The nuclei divide first and then the membranes form.

After cellularization, both autonomous AND conditional specification are seen.

31
Q

(T/F) In autonomous specification, cell type specification occurs before any large-scale embryonic cell migration. While, massive cell rearrangements and migrations occur before or with specification in conditional specification.

A

True!

32
Q

(T/F) With autonomous specification, you can trace the lineage of cells.

A

True!

For example at the 8-cell stage of the embryo of the tunicate (styela partita), all of the tissues and layers are already specified in what they are becoming. By using a linear version of the S. partita fate map which shows the fates of each cell of the embryo, you can track the lineage of cells.

33
Q

(T/F) When the four blastomere pairs of the 8-cell tunicate embryo are dissociated, each forms the structure it would have formed had it remained in the embryo (AUTONOMOUS). No exceptions!

A

False! There is one exception: tunicate nervous system is CONDITIONALLY SPECIFIED.

Rest all are autonomous!

34
Q

For the tunicate embryo 8-cell stage, a4.2 and b4.2 turns into __________, while a4.1 turns into _________ and b4.1 turns into ____________.

A

Ectoderm; notochord/endoderm; muscle/mesenchyme/endoderm

35
Q

What does the macho gene of the tunicate regulate?

A

Muscle development

36
Q

The macho transcript is localized to the _______-most end of the tunicate egg and differentially expressed only in the _______ blastomere.

A

Vegetal; B4.1

37
Q

1) Knockdown of macho function (in tunicates) by injection of targeting antisense oligonucleotides causes:

2) Ectopic mis-expression of macho in other blastomeres causes:

A

1) REDUCTIONS in muscle differentiation

2) EXPANDED muscle differentiation

38
Q

1) What happens when normal back cells of a tadpole blastula is transplanted into belly regions?

2) What happens if the back cells are just removed and not transplanted anywhere?

Hint: They follow conditional specification.

A

1) What a cell becomes depends on its position in the embryo. Its fate is determined by interactions with neighbouring cells. Thus, the back cells in the belly become belly cells!

2) If cells are removed from the embryo, the remaining cells can compensate for the missing part. Thus, normal development of embryo would occur. (if this was autonomous specification, there would be a chunk of missing cells in the back).

39
Q

(T/F) In conditional specification, as the cells become more and more differentiated, they stop being as conditional as they were once before. There are deadlines to conditional specification.

A

True!

40
Q

Briefly describe Driesch’s demonstration of conditional specification using sea urchin embryo.

A

An intact 4 cell sea urchin embryo generates a normal pluteus larva.

But when one removes the 4-cell embryo from its fertilization envelope and isolates each of the four cells, each cell form a smaller, but normal, pluteus larva!

41
Q

(T/F) The larvae generated from single cells of 4-cell sea urchin embryo are identical.

A

False! They are not identical, despite their ability to generate all the necessary cell types.

42
Q

Syncytial specification is seen in __________ _________.

Cellularization only happens at cycle ____, while there is a global wave of nuclei division during cycle ____!

_______ are dynamically ordered within the syncytium of the early embryo, holding their positions using _______ elements associated with them (‘_________’).

A

Drosophila melanogaster

14; 13

Nuclei; cytoskeletal; asters.

43
Q

How do the nuclei of Drosophila Melanogaster multiply in a common cytoplasmic space?

A

The nuclei undergo S-phase (DNA replication) and sister chromatids get pulled apart and re-assembled into nuclei containing full sets of homologous chromosomes, but CYTOKINESIS DOES NOT OCCUR.

44
Q

Match the nuclear cycles of Drosophila early development to their definitions:

1) Cycles 8-9
2) Cycles 10-13
3) Cycle 14

A) Cellularization interphase
B) Nuclear migration toward cortex
C) Syncytical blastoderm cycles

A

1) Cycles 8-9: Nuclear migration toward cortex

2) Cycles 10-13: Syncytical blastoderm cycles

3) Cycle 14: Cellularization interphase

45
Q

Which one of the statements regarding morphogen gradients during syncytical specification in Drosophila Melanogaster is false?

1) Anterior-posterior specification originates from morphogen gradients in the egg cytoplasm, specifically of the transcription factors Bicoid and Caudal.

2) The amounts of each morphogen (ratio) differentially activate transcription of various nuclear genes that specify the segment identities of the larval and the adult fly.

3) While bicoid is the “tail morphogen” of the fly, caudal is the “head morphogen”.

A

Statement 3 is false!

Bicoid (anterior) is the “head morphogen” while caudal (posterior) is the “tail morphogen”.

46
Q

What happens if there is a bicoid deficient mutant in Drosophila melanogaster?

A

Since bicoid is responsible for the anterior parts of the fly, there would be a lack of anterior body parts (acron, head, and the thorax).

There would also be a tail forming in the anterior side.

47
Q

How is cell fate studied? Briefly describe the process.

A

Cell fate can be studied using scRNAseq (single cell RNA sequence).

Staged embryos –> Dissociate –> Single cell isolation –> scRNAseq –> Gene expression space

This process allows to study the transcripts of every cell in the embryo and each transcript is sequenced.

48
Q

(T/F) In a visualization of a full gene expression landscape with representative cell states over the course of the first 24 hors of zebrafish embryonic development, the earliest time points are at the image’s center while the more differentiated cells emerge outward to epidermal, mesendodermal and neural lineages.

A

True!

49
Q

(T/F) The central dogma of biology contains key levels of molecular regulation for development.

A

True!

50
Q

How was Dolly, the sheep produced?

A

Dolly was derived by fusing a mammary gland cell nucleus (adult somatic cell) with an enucleated oocyte, which was then implanted in a surrogate mother (of a different breed sheep) that gave birth to Dolly.

Dolly also could reproduce and she was genetically identical to the nuclear donor and not the egg donor.

This just shows us how powerful the genome is!

51
Q

Autonomous specification results in ______ development (cells cannot change fate if a blastomere is lost), while conditional specification results in _________ development (cells can acquire different functions).

A

Mosaic; regulative