Pathogenesis Models Flashcards

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1
Q

Describe the structure of Corynebacterium diphtheriae. What type of pathogen is this? (viral, bacterial, fungal, protozoan, Gram-negative, Gram positive, mycobacteria, enveloped, naked, etc)

A

Corynebacterium diphtheriae is usually associated with this disease diphtheria which is a very severe disease. Caused by gram positive bacteria.

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2
Q

Where does Corynebacterium diphtheriae colonize the human body?

A

They normally colonize the nose. They are also sometimes found on the skin and they do not make spores. They are aerobic bacteria.

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3
Q

Name the 2 virulence factors that Corynebacterium diphtheriae possesses. Explain how each is necessary to cause disease.

A

The pili/fimbriae allow them to attach to the cells in the human pharynx. Once they’ve attached there, they start secreting a toxin which causes the disease.
The toxin kills the cells and it triggers an immune response from the body that results in a structure called a pseudo membrane. This pseudo membrane grows, usually in the upper airway and the back of the throat, and when it grows large enough it can block the upper airway completely. (DTx- the toxin that’s produced by this disease.) So this toxin is the second virulence factor.

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4
Q

Which organs and tissues are damaged during a classical Corynebacterium diphtheriae infection?

A

The toxin that’s being produced by these bacteria attack the heart, they attack the brain and they attack the kidneys. It also attacks the cells of the throat.

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5
Q

What is fibro-fatty infiltration?

A

When the toxin starts killing the heart muscle cells, the dead cells get replaced with scar tissue–what we call fibro fatty infiltration. Where now instead of contractile pink muscle cells, we have white fibrous extracellular material and sometimes some extra fat cells, some adipocytes. And so that’s why they call that fibro fatty infiltration. And it’s a type of scar tissue.

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6
Q

Describe what the term AB exotoxin means in detail.

A

The AB part refers to that there are two functional components to the toxin. The B part means a portion of the toxin that binds human cells. The B portion is necessary for this toxin to bind the human cell like a human heart cell. And the A portion is the part that is a catalyst, an enzyme that will damage human cells. the A part of the toxin, is the part that stops protein synthesis and this results in the death of the cell. The cell dies.

Down here in this diagram, the double black line represents the plasma membrane of a human cell. Think heart cell, but it could be brain or kidneys. And on the surface of that cell is a protein.
The diphtheria toxin is symbolized by this (T-Domain- red, C-Domain- green, R-Domain -blue).
One part of the protein attaches to the protein in the human membrane. And so now the toxin has attached to the plasma membrane of a human cell. After a period of time induced endocytosis will occur and a piece of that membrane gets pulled inward. During that endocytosis process, there’s usually hydrogen ions pumped into the endosome and that triggers the protein, the toxin to change shape. The red region forms a little channel through the endosome membrane and then allows the green region, the catalytic domain, to move out of the endosome and into the cytosol of the cell. So basically this toxin can sense when it’s been pulled into an endosome because of the acid that gets pumped into the endosome. And that acid then triggers the toxin to put part of itself in the cytosol, and that portion cuts itself free and diffuses over to cellular molecules called EF 2. EF2 is a protein that human cells have. EF2 is vital for the process of translation, for protein synthesis.

The enzyme part of the toxin inactivates the protein EF 2. When EF2 has been attacked by the toxin, the EF2 cannot attach to the ribosome and the ribosome can’t make proteins. When EF2 has been attacked by the toxin, the EF2 cannot attach to the ribosome and the ribosome can’t make proteins. So what we see here in the bottom right is another way of looking at that. This is NAD. The target protein here would be EF2. An enzyme is going to take those two things and react them together and that’s going to produce a target protein with this junk attached to it. The target protein is now inactive.

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7
Q

How is diphtheria prevented?

A

Diphtheria is prevented by vaccine, a toxoid. It has reduced incidence of Diptheria in our population significantly since it was administered nation wide. However, vaccination doesn’t prevent asymptomatic carriage.

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8
Q

How do bacteriophages relate to the 2 diseases called diphtheria?

A

Corynebacterium diphtheriae is an example of a bacteria that only becomes dangerous if it carries a lysogenic bacteriophage. Remember a bacteriophage can sometimes infect a bacterial cell, and then the DNA from the bacteriophage inserts into the bacterial cell’s chromosome. This special type of bacteriophage called beta phage can bring a gene that teaches the bacterial cells how to make the toxin. If they make the toxin they cause disease.

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9
Q

What does diphtheria toxin do once it enters a target cell? What are its target cells?

A

As far as diphtheria toxin goes the cells that this binds to are mostly heart, kidney, and brain cells. It also attacks the cells of the throat. It’s not actually that good at attacking the cells of the throat, but they’re so much closer to the bacteria than the other cell types that they get a fairly high dosage of the toxin. The catalyst stops protein synthesis in a target cell.

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10
Q

How does the diphtheria vaccine work? What is the name for all vaccines that work in similar ways?

A

The way the toxoid in specific works, is the toxoid stimulates the production of antibodies in the human body and those antibodies bind to diphtheria toxin. This antibody binds to diphtheria toxin and it allows the body to then neutralize diphtheria toxin. A toxoid is a type of vaccine that’s useful for intercepting a toxin.

Any vaccine that has a D in it, usually means it has the diphtheria toxoid, like TDaP or just DT or DTP or TD.

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11
Q

How is the diphtheria vaccine different from an antitoxin? What is an antitoxin?

A

An antitoxin is antibodies against a toxin that are formed, and then injected. But a toxoid is different, a toxoid isn’t directly injecting the antibodies, it’s stimulating antibody production.

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12
Q

Compare and contrast cutaneous diphtheria with classical diphtheria.

A

Cutaneous diphtheria

C. diphtheriae- wound/skin lesion infection

Slow-healing ulcer

Toxin stays local, damage limited

Disease depends on route of exposure and site of infection

The disease that Corynebacterium diphtheriae causes is determined by its route of
exposure and its site of infection. If you breathe in the droplets, that’s your route of
exposure. If it infects your throat, it’s going to cause the classic diphtheria, which could
be deadly.

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13
Q

The diphtheria vaccine does not prevent people from carrying Corynebacterium diphtheriae. Why not?

A

Vaccination against this toxin does not prevent asymptomatic carriage.

Non-toxigenic Corynebacterium spp. causes less severe disease and is not vaccine-preventable, as diphtheria toxin is the antigen for all diphtheria vaccine formulations.

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14
Q

A true pathogen or strict pathogen must meet 2 criteria. State them.

A

Obligate parasite- typically causes disease when present in/on a human. It’s obligatory to cause disease. An obligate parasite is one that must be a parasite to survive. It must damage its host in order to live.
Specialist on humans- does not grow on other hosts

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15
Q

What does the term facultative parasite mean?

A

A facultative parasite is one that has a life cycle where it doesn’t necessarily damage its host; it may not even have a host. And so it can switch into becoming a parasite when it gets on or in a person, but outside of that specific set of circumstances, it doesn’t cause disease. And so that is an example of an opportunistic pathogen.

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16
Q

Define: commensal opportunist.

A

That pattern where you have micro flora and some anatomic site that gets displaced or overgrows to a new site, so a new place in the body, and causes disease; that pattern is called commensal opportunist. Staphylococcus epidermidis is a type of commensal opportunist.

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17
Q

Where is Staphylococcus epidermidis normally found? In other words, what is its reservoir?

A

On the skin. Dominant microflora of the skin. 90% of the skin microbes are staphylococcus epidermidis.

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18
Q

Describe the structure of Staphylococcus epidermidis. What type of pathogen is this? (viral, bacterial, fungal, protozoan, Gram-negative, Gram positive, mycobacteria, enveloped, naked, etc)

A

Staphylococci are Gram positive cocci that grow in these clusters. Staphylococcus means cluster of round cells and the staphylococci are all Gram positive, at least the genus Staphylococcus is all Gram positive. Coagulase negative staphylococci

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19
Q

Describe 2 diseases that Staphylococcus epidermidis causes. HINT: you might not think of one of these types of infections as a disease, since it is usually minor and self-limited.

A

A local infection that most people would look at and call a boil. The technical term for this is furuncle if it’s relatively minor or if it’s multiple regions right next to each other in the skin is sometimes called a carbuncle.

Infective endocarditis- If the bacteria were to attach in the heart valves and trigger an inflammatory response, the bacteria would damage these valves and the immune system would also damage these valves, and so the valve would no longer function. If the bacteria destroy the heart valves, then the heart becomes a lot less efficient. Every time the heart contracts ejects the blood, when it relaxes some of that very same blood comes right back into the heart. And so it’s not moving anywhere.

20
Q

List 7 virulence factors of Staphylococcus epidermidis and describe how each contributes to pathogenicity (infectivity and damage).

A

Biofilm- it’s pretty good at forming biofilms on medical devices that are inserted into the body. Sometimes we see Staph. epidermidis forming a biofilm inside the body and that can lead to a disease. Staph. epi makes a capsule. It makes a capsule out of an exopolymer that’s not polysaccharides. Capsules fight phagocytosis and capsules allow for biofilms to form. And so when Staph. epidermis is growing inside of a person’s heart they could be attaching using this exopolymer. They’re resisting the white blood cells of the immune system with this capsule, and they’re forming multiple layers on that heart tissue using the capsule to make a biofilm.

They also attach to human tissues with proteins called adhesins.

They make a series of proteins called staphyloferrin, which are iron binding proteins. These are siderophores. These are proteins that they use to grab up any iron so that they can pull the iron into their cells.

They make a protein called C5 protease.

They make toxins that attack white blood cells, that damage neutrophils and damage the cells that they’re growing next to. Those toxins are called cytolysins. So these cytolysins are proteins that cause lysis of cells.

One of our defenses on our skin is a set of proteins called antimicrobial proteins, and they make digestive enzymes that attack our antimicrobial proteins. So we’re always trying to reduce the number of microbes on our skin with these AMPs and they make an enzyme that digests our AMPs called AMP protease.

Since these are part of our microflora, there are many antibiotic resistant strains of staphylococcus epidermisYou can imagine these are on your skin.
Then you take antibiotics. The only Staph. epidermis that survives are the ones that are resistant. And every time you take antibiotics you are selecting from more resistant strains. There are many strains of Staph. epi that have lots of antibiotic resistance genes.

21
Q

What does a heart valve normally do?

A

They prevent blood from moving the wrong direction when the heart relaxes. When the heart contracts, blood is ejected out of the heart when it relaxes, we don’t want the blood that just left to come back in, because that would be pointless. The valves are one way valves that prevent the backflow of blood.

22
Q

What is the endocardium? What does endocarditis mean?

A

The endocardium is the lining of the hollow spaces inside the heart, where the heart makes contact with blood. Endocarditis is inflammation of that lining, including the valves.

23
Q

Staphylococcus epidermidis is found on the skin of every human being. People injure their skin with minor cuts, abrasions, and burns many times over the course of their lives. Yet, Staphylococcus epidermidis only very rarely causes serious infections. What does this suggest about the overall pathogenicity of Staphylococcus epidermidis? Which factors might make it more likely that a person develops a serious Staphylococcus epidermidis infection?

A

This is Staph. epidermis. This is normal microflora, but it’s not harmless. Perhaps these virulence factors are necessary for it to survive on the skin, but when it gets into the body, these virulence factors turn our microflora into a deadly pathogen.

24
Q

Summarize the complement system of proteins.

A

Complement is a set of about 30 proteins found in the blood/plasma. They destroy microbes, they attack microbes. Now, if a microbe can survive this, that’s called serum resistance. ​​Staph. epidermis makes an enzyme (C5 protease) that attacks a key complement protein (C3, C5, C9, etc…). Protease is an enzyme that digests proteins. C5 protease digests the C5 complement protein. And the protease of that, would attack and neutralize that complement protein. And once you take away that complement protein, the complement system doesn’t work so well because that turns out to be a key protein in the 30 proteins of the complement system.

25
Q

Define: environmental opportunist. Describe the metabolic lifestyles of environmental opportunists.

A

Pseudomonas aeruginosa is an example of an environmental opportunist. An environmental opportunist is a micro organism that normally grows outside of any host. For example, a soil organism, a saprophytic organism that normally eats dead organic matter. Some saprophytes are such generalists that if they find themselves inside the human body or in a human tissue, they can reproduce and cause an infection.

26
Q

Describe 3 places where you might come in contact with Pseudomonas aeruginosa.

A

Pseudomonas aeruginosa normally found in the soil.
Because of its pretty high chlorine resistance, it can also be found anywhere that there’s water (hot tubs).
In the drain of a sink, down in the pipes or the entry of the sink drain.

27
Q

Describe the structure of Pseudomonas aeruginosa. What type of pathogen is this? (viral, bacterial, fungal, protozoan, Gram-negative, Gram positive, mycobacteria, enveloped, naked, etc)

A

This is an organism that is a gram negative rod and it has flagella; the flagella are not that important for its virulence. It’s an aerobic bacteria, meaning it uses oxygen, it actually can’t do any fermentation. It is an environmental opportunist.

28
Q

What color does Pseudomonas aeruginosa appear when growing in culture? What makes it turn this color? How can this fact be used to identify Pseudomonas aeruginosa infections?

A

It produces a green pigment. Pseudomonas aeruginosa struck out on agar and the colonies have this greenish color and the green pigment is diffusing out of the colonies. It does not do photosynthesis. It’s just some kind of weird pigment and it might be a factor in its virulence.

The quats no longer work at all. The hexachlorophene doesn’t work at all. The O-phenylphenol doesn’t work at all, and even the chlorine only attacks the bacteria successfully very close to the disk, where the concentration is high. Pseudomonas aeruginosa is relatively resistant to chlorine. There are some examples of some infections caused by Pseudomonas aeruginosa.

Pseudomonas aeruginosa is a common cause of what’s known as swimmer’s ear, which is usually a relatively minor infection of the outer ear canal. Right. There’s the ear canal that extends from the outside world towards the eardrum, inside. And any of that outer part of the canal can get infected. And when that happens, we often call it swimmers’ ears because swimmers sometimes get these infections from spending so much time in the water. Pool water that people swim in is generally chlorinated but if it isn’t chlorinated perfectly, then there’s a chance for exposure to Pseudomonas. And that Pseudomonas doesn’t always cause disease, but if you swim every day and get exposed to Pseudomonas every day, maybe eventually, it would infect your ear canal.

29
Q

The LPS chains of Pseudomonas aeruginosa are longer and more densely packed than the LPS chains of E. coli and other similar organisms. Describe 2 ways that long, dense LPS chains affect the ability of Pseudomonas aeruginosa to cause disease.

A

So P. aeruginosa have longer polysaccharides packed closer together. And this makes these bacteria really tough. Their LPS starts to function, similar to a capsule. They have dense polysaccharide. They’re really good at establishing a biofilm. In addition to their dense lipopolysaccharide, they can make capsules and they can attach to all kinds of things.

30
Q

In addition to LPS, list 5 virulence factors of Pseudomonas aeruginosa and describe how they contribute to pathogenicity (infectivity and damage).

A
  • Pseudomonas aeruginosa makes use of its fimbriae to attach to human cells, which is an important part of establishing an infection.
  • Neuraminidase- an enzyme that makes the fimbriae work better. This enzyme will digest the sugars found on the surface of human cells. And when that happens, it makes it so that the pili can attach to our human cells better.
    • Exotoxins;
  • biofilm; blue-green pyogenic pigment (pyocyanin)
  • It has lipopolysaccharide that is dense and that has long O antigens and this is
    thought to be one of the reasons why it resists many disinfectants.
  • Bacteremia- present of bacteria in the blood in large/culturable numbers.
31
Q

Name 6 different anatomical locations where Pseudomonas aeruginosa commonly causes infections. Which factors put a person at risk for developing each of these Pseudomonas aeruginosa infection types.

A

It can colonize the skin, on moist skin. It’s mostly associated with the skin around the genitals or around the anus. Sometimes the armpits.
•Hot tub folliculitis (skin, pustules, self-limiting)
•Swimmer’s ear (otitis externa)
•Wound infections
•Urinary tract infections (biofilms on urinary
catheters)
•Lung infections in cystic fibrosis patients
•Burn infections
•Endocarditis (usually artificial valve or IVDU)
•Bacteremia

32
Q

Define: zoonosis, zoonotic pathogen (yes, this is review).

A

Rabies virus is a classic example of a zoonotic pathogen and the disease that the zoonotic pathogen causes is called a zoonosis. A zoonotic pathogen is an organism that usually infects some non-human vertebrate. When it gets transmitted into a human, if it can still cause disease, we call it a zoonotic pathogen. Rabies virus causes rabies. Rabies virus is the zoonotic pathogen. Rabies is the zoonosis. This is a rapidly mutating virus and it is transmitted, usually by the bite of an infected vertebrate.

33
Q

What is another name for a neuron? What are the functions of a neuron? What is the name of the narrow gap found between neurons?

A

The nerve cells are very long. They’re called neurons; they’re very long, but they have these little junctions with other nerve cells inside the spinal cord. These little junctions, these little gaps where signals jump from one cell to the next, those little gaps are called synapses. Neurons can hide the rabies virus from the immune system. It tries to carry the virus to the brain.

34
Q

Name the 2 main organs of the central nervous system. Where is the peripheral nervous system found and what does it do?

A

The brain and spinal cord are considered the central nervous system. They’re directly connected to each other and they are coated with a layer of protective membranes called the meninges. The peripheral nervous system is located throughout the body. It’s the electrical wires carrying information to and from the organs to the brain and spinal cord.

35
Q

Consider a virus inside a human cell that is not reproducing inside that cell. Explain how this virus is hidden from the 2 main weapons of the adaptive immune system, CD8 T cells and antibodies.

A

Viruses that are in a latent phase of their life cycle can hide from the immune system by staying inside of the cell hidden from antibodies. While in the latent phase, no proteins are produced since they are not growing, so CD8 T cells can’t detect them.

36
Q

How is the rabies virus usually transmitted to a person? Consider both the US and the world in general.

A

In the US, there’s very little rabies in dogs. So in the US, transmission of rabies virus into people is usually from the bite of a fox or a skunk or a raccoon, or sometimes a bat. That bite carries the virus into skeletal muscle tissue. Carried in the saliva of the infected host. Worldwide, it’s mostly dogs that transmit this virus, through the saliva of a dog, but in the United States we have vaccinated most of our dogs against rabies. And we have a pretty good veterinary health program. So our vets are keeping people safe by making sure that dogs don’t have rabies. Many parts of the world don’t have the infrastructure to do rabies vaccines on dogs. There are parts of the world where there are large packs of wild dogs. Those dogs can bite people and transmit the virus through their saliva.

37
Q

Describe all of the steps in a rabies virus infection, from transmission to final outcome. Explain what the virus is doing at each step and what the consequences are for the person who is infected.

A

a person who gets bitten by a raccoon, a fox, a skunk or a dog that is already infected with the rabies virus. The saliva carries the virus into the muscle tissue around the bite wound. The virus reproduces in the skeletal muscle cells and then moves into the peripheral neurons. Once it enters one of those very long skinny neurons, it’s inside that neuron, it is now hidden from the immune system. The virus particles, the virions get carried up in the neuron towards the spinal cord, towards the central nervous system. When that peripheral somatic neuron makes contact with the spinal cord, there’s a synapse. It’s at that synapse that the virus jumps into the next cell, a cell of the central nervous system. Once it’s inside that central nervous system neuron, it moves up the spinal cord to the brain. And once it’s in the brain, it triggers encephalitis, inflammation of the brain tissue. It also moves into various other organs of the body such as the salivary glands.

38
Q

At what point during the infection described in #37 can the immune system possibly intercept the virus? What does the immune system need in order to do this?

A

At the moment that the virions jump from the peripheral nervous system to the central nervous system, at that moment where they’re exposed in the synapse, there is a chance for the immune system to intercept the virus.

Long incubation period creates the opportunity to prevent disease after transmission–post-exposure prophylaxis. We could intercept those virions, if our immune systems were just ready and waiting for it.

39
Q

Define in general terms post-exposure prophylaxis. Name 2 viral infections where a strategy of post-exposure prophylaxis is employed. What do these 2 viral diseases have in common that makes post-exposure prophylaxis a possibility? What is given to the patient in each example of post-exposure prophylaxis?

A

When a person gets bitten and exposed to a rabies virus, we have this up to 10 day incubation period to do a treatment called post exposure prophylaxis (PEP). Post exposure prophylaxis means that you know that the person has been exposed to the pathogen. The virus is on board but you are going to prevent disease. Prophylaxis means prevention. So we’re already exposed to the pathogen, but somehow stopping disease.
In the world of HIV, where you could prevent the development of HIV after a person gets infected, you can prevent the development of AIDS, I should say, after a person gets infected with HIV. Well, here we’re looking at rabies. We’re preventing the development of rabies after a person gets infected with the rabies virus. And when we do that two ways.
Silver haired bat rabies virus. This virus can infect the deep cells of the skin, the dermal layers of the skin.

antibodies are given to the patient or an weakened or attenuated virus is given to the person for their immune system to make antibodies.

40
Q

Microbe that grows in coastal ocean waters and which can enter a wound to cause serious infections

A

Environmental opportunist

41
Q

Microbe that is only transmitted from people to people and which is almost always associated with disease.

A

Strict, human pathogen

42
Q

Microbe that is commonly found in birds and which occasionally infects bird-owners.

A

Zoonotic pathogen

43
Q

Microbe that is found in many people’s bodies and which can sometimes cause disease when it overgrows or moves to a normally sterile anatomic site.

A

Commensal opportunist

44
Q

Name a pathogen discussed in lecture that matches each of the the following terms:
Commensal opportunistic

A

Staph. epidermis

45
Q

Name a pathogen discussed in lecture that matches each of the the following terms:
Zoonotic pathogen

A

rabies virus

46
Q

Name a pathogen discussed in lecture that matches each of the the following terms:
Strict, human pathogen (true pathogen)

A

DTx

47
Q

Name a pathogen discussed in lecture that matches each of the the following terms:
Environmental opportunist

A

P. aeruginosa