part 4 of day II Flashcards

1
Q

Receptors that are kinases
serine/threonine kinase receptors
TGF-beta signaling

A

Binding of TGF-beta (a type of cytokine) alters the receptor so it can bind to a second receptor and phosphorylate it at serine/threonine residues.

The second receptor is then able to bind a protein, R-Smad, and
How do plasma membrane receptors transmit signals?
How do signaling pathways change gene expression?
phosphorylate it

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2
Q

TGF-beta signaling

A

1) TGF-Beta binds to type II receptors
2) Type II receptor phosphorylates type I receptors
3) activated type I receptor phosphorylates R-Smad
4) R-Smad complexes with Cp-Smad and migrates to the nucleus

The phosphorylation of R-Smad allows it to interact with a Co-Smad protein.

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3
Q

R-Smad

A

regulatory Smad

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4
Q

Receptors that bind to and activate kinases

A

Jak-Stat signaling

unlike other receptors, these receptors are not kinases

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5
Q

Jak-Stat signaling

A

Binding of a cytokine activates the receptor to dimerize and bind Jak proteins, which are then activated to phosphorylate each other and the receptor

Stat proteins then bind and are phosphorylated by Jak proteins. This triggers the Stats to dissociate from the receptor and dimerize.

The dimerized Stats move to the nucleus, bind to genes, and alter their rate of transcription

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6
Q

Jak-Stat signaling

detail

A

1) receptors bind cytokines, dimerize, and bind JAKs
2) JAKs phosphorylate each other and the receptors
3) Receptors binds and phosphorylates STATs
4) STATs dissociation from receptors, dimerize, translocate to nucleus

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7
Q

Jak-Stat signaling

drug target

A

Inhibitors of the Jak kinases are approved for the treatment of
psoriasis, myelofibrosis, and rheumatoid arthritis.

Jak-Stat signaling is abnormally activated in some cancers. Jak inhibitors are being evaluated in clinical trials for treatment of leukemia and Stat inhibitors are under development.

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8
Q

Heptahelical or G-protein-coupled receptors (GPCRs)

A

GPCRs have 7 membrane-spanning, a-helices.

They associate with heterotrimeric (3 subunit-a,b,g) G-proteins in
How do plasma membrane receptors transmit signals?
the absence of their ligand.

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9
Q

GPCRs are bound by

A

There hundreds of different GPCRs that are specifically bound by hundreds of hormones or neurotransmitters.

Examples: Epinephrine, serotonin, eicosanoids (prostaglandins, leukotrienes), histamine, glucagon

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10
Q

Heptahelical or G-protein-coupled receptors (GPCRs)

response

A

Binding of the ligand to the receptor triggers a cellular response through changes in production of second messengers.

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11
Q

What is a second messenger

A

A second messenger is a small, diffusable signaling molecule, the production of which is altered in response to a stimulus. They regulate effector proteins within the cell to exert a cellular response.

Examples: cAMP, cGMP, diacylglycerol (DAG), inositol triphosphate (IP3), calcium ions, nitrous oxide (NO)

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12
Q

Different GPCRs

A

Different GPCRs associate with distinct G-protein complexes which differ in their alpha subunit.
- Different alpha subunits regulate the production of different second messengers

Ga(s) – increases cAMP production
Ga(i/o) – inhibits cAMP production
Ga(q/11) – increases DAG, IP3, and calcium

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13
Q

example: GPCR bound to a G protein complex with Ga(s)

A

1) The G protein complex breaks apart and away
from the receptor upon binding of ligand
2)The alpha subunit exchanges its bound GDP for GTP
3) The GTP-bound Ga(s) binds adenylate cyclase and activates it to make cAMP.
4) Eventually Ga(s) hydrolyzes the bound GTP to GDP, inactivates itself, and reassociates with receptor and the b,g subunits.

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14
Q

What happens to the second messenger

A

Once the second messenger is produced it diffuses through the cytoplasm and binds specific proteins.

Example: cAMP signaling
cAMP binds Protein Kinase A (PKA) and
activates it
PKA phosphorylates transcription factors and activates them to bind genes and alter their transcription.

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15
Q

Key concept of what happens to the second messenger?

A

Key concept: Proteins bound by second messengers alter gene expression through regulation of transcription factors.

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16
Q

Cellular response
Key concept

signaling pathways change gene expression?

A

Key concept: Signaling pathways regulate transcription factors to alter gene expression and elicit a cellular response`

17
Q

Transcription factors contain

signaling pathways change gene expression?

A

Transcription factors contain a DNA binding domain that recognizes a particular DNA sequence.

18
Q

The DNA sequence recognized

The DNA sequence recognized

A

The DNA sequence recognized is specific for each transcription factor and depends on the amino acid sequence of the DNA binding domain.

19
Q

What factors DNA binding domains?

A

Structures of different transcription factor DNA binding domains

Example:

  • zinc fingers
  • leucine zipper
  • helix-turn-helix
  • helix-loop-helix
20
Q

regulation of genes that contain the DNA

A

Transcription of genes that contain the DNA binding sequence for a given transcription factor will be regulated by that transcription factor and the signaling pathway(s) that target it.

21
Q

regulatory regions of genes

A

Transcription factors bind to DNA in the regulatory regions of genes.

22
Q

Regulatory regions of a gene are

A

enhancers and the promoter.

23
Q

promoter

A

The promoter is just upstream to the start site of transcription and is where RNA polymerase binds the gene to begin transcription.

24
Q

enhancer

A

Enhancers can be upstream or downstream of the gene body or even in intron regions. They act to strengthen the promoter’s ability to attract RNA polymerase.

25
Q

Transcription factors change the rate

A

Transcription factors change the rate of transcription by increasing or decreasing the ability of RNA polymerase to bind the promoter and copy the gene to make RNA.

26
Q

Some transcription factors increase the rate of transcription while others decrease it.

A

Activators vs. Repressors

27
Q

Signaling pathways can regulate

A

Signaling pathways can regulate a variety of transcription factors in a cell.

Thus, in eliciting a cellular response, signaling pathways activate expression of some genes while repressing others.

28
Q

organism to maintain homeostasis

A

In order for a cell, organ, organism to maintain homeostasis, activated signaling pathways need to be turned off.

29
Q

Signal transduction can be terminated in a variety of ways

A

The chemical messenger (hormone/neurotransmitter) ceases to be released or is degraded.

Receptor levels decrease due to internalization and/or degradation

Phosphatases remove activating phosphorylation from receptors, signaling intermediates, and transcription factors
-Development of cancer is sometimes associated with mutation of a gene encoding such a phosphatase (PTEN)

Second messengers are degraded
- Viagra (sildenafil) targets an enzyme that degrades a second messenger

30
Q

DNA has

A

exon and intron

Then enzyme come in and remove the introns