Oncogenes and Tumour Supressors Flashcards

1
Q

Recap: What is a hallmark?

A

A characteristic a normal cell has to acquire in order to become a tumour cell

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2
Q

Which two hallmarks of cancer are linked to oncogenes and tumour supressors?

A

Sustaining proliferative signalling = oncogene

Evading growth suppression = tumour suppressor proteins

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3
Q

Summarise the major functional changes which occur in cancer

A
  1. Increased growth (loss of regulation, stimulation of environment promoting growth e.g angiogenesis)
  2. Failure to undergo programmed cell death apoptosis or senescence
  3. Loss of differentiation (including alterations in cell migration and cell to cell adhesion (forms hallmark for metastases)
  4. Failure to repair DNA damage (including chromosomal instability)
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4
Q

What is an oncogene? (Myc + Ras)

A

An oncogene is a mutant form of the normal gene (proto-oncogene) which can promote cell proliferation and are permanently active in cancer

They will normally encode for components of growth factor signalling pathways, when mutated they will produce products at a higher quantities or altered products will act in a dominant manner

(Oncogenes can be counteracted by tumour suppressor genes if they are strong enough)

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5
Q

Describe the historical perspective of oncogenes and their discovery

A
  • Francis Peyton Rous used cell filtrate from a large tumour on chicken chest muscle to induce chicken sarcomas in healthy chickens .
  • Found that the carcinogenic agent was small enough to pass through a filter (which excluded viruses)
  • Concluded that a virus must be responsible
  • Discovered that oncogenic transformation by this virus is caused by an extra gene which is contained in its genome called = oncogene (v-src)
  • The Rous sarcoma viral gene is actually a host gene which has been kidnapped by the virus and transformed into an oncogene
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6
Q

Why does Rous sarcoma virus cause cancer (sarcoma)?

A

The virus contains a proto-oncogene (c-src) which acquires fragments of genes from host integration sites, resulting in the creation of a viral oncogene (v-src).

This causes _oncogenic transformation a_nd abnormal grwoth in host cells.

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7
Q

What is v-src?

A

An oncogene coding for 60kDa intracellular tyrosine kinase which can phosphorylate cellular proteins and affect growth.

(c-src proto-oncogene will acquire fragments of genes from host integration sites = viral oncogene v-src)

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8
Q

How do DNA viruses cause oncogenesis?

A

DNA viruses will cause lytic infection leading to death of the cellular host or replicate their DNA along with that of the host promoting neoplastic formation

DNA viruses will encode various proteins along with environmental factors which can initiate and maintain tumours

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9
Q

How can RNA viruses cause oncogenesis?

A

Integrate RNA copies of their genome into the genome of the host cell and as these contain transforming oncogenes they induce cancerous formation of the host

E.g EBV will produce its own oncogene called latant membrane protein (LMP-1) causing Burkitts Lymphoma, B-cell Lymphoma, Nasopharyngeal carcinoma

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10
Q

How can oncogenes be activated?

A

Oncogenes become activated due to alterations in the proto-oncogene sequence

  • Mutations
  • Insertions
  • Amplification
  • Translocation

These alterations can cause a loss of response to growth regulatory factors (only one allele needs to be altered)

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11
Q

What do proto-oncogenes encode?

A

They are normal signal transduction pathways encoding components of the growth factor signal transduction pathway

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12
Q

What are the products of oncogenes?

A

Proteins involved in the transduction of growth signals

  • Growth factors (EGF)
  • Growth factor receptors (ErbB)
  • Intracellular signal transducers (Ras and Raf)
  • Nuclear transcription factors
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13
Q

What can oncogenic proteins act as?

A

The oncoproteins produced by oncogenes will function as elements of the signalling pathways which regulate cell proliferation and survival (in response to growth factor stimulation)

Oncogene proteins will act as:

  • Growth factors e.g EGF
  • Growth factor receptors e.g ErbB
  • Intracellular signalling molecules e.g Raf and Ras 
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14
Q

What pathway do Ras and Raf activate?

A

Ras and Raf will activate the ERK/MAP kinase pathway leading to induction of additional genes (e.g fos) that encode potentially oncogenic transcription of regulatory proteins

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15
Q

Describe the discovery of the Ras oncogene family

A

Ras genes were identified from two cancer causing viruses -

  • Harvey Sarcoma and Kirsten sarcoma
  • They were originally discovered in rats hence called Rat sarcoma
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16
Q

What are Ras proteins?

A

Small GTPases which are bound to GDP in their inactive state

-

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17
Q

How can mutated Ras proteins cause oncogenesis?

A
  • Ras proteins become mutated through point mutations
    • In codon 12, 13, 61
  • CONSEQUENCE = loss of GTPase activity required to return active Ras to inactive Ras GDP = hyperactive Ras (constitutive activation)
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18
Q

What occurs as a consequence of codon 12 point mutation in Ras?

A

Glycine to Valine = bladder carcinoma

Glycine to Cysteine = lung cancer

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19
Q

Describe the normal RAS mechanism

A
  1. Binding of extracellular growth factor signal
  2. Promote recruitment of Ras proteins to receptor complex
  3. Recruitment promotes Ras to exchange GDP (inactive Ras) with GTP (active Ras)
  4. Activated Ras then initiates the remainder of the signalling cascade (protein kinases phosphorylation)
  5. These kinases will phosphorylate targets (e.g TRANSCRIPTION FACTORS)
  6. This will promote the expression of genes important for cell growth and survival

Ras will normally hydrolyse GTP to GDP fairly quickly (turning itself off) however in mutated form it is hyperactive

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20
Q

Describe the Myc oncogene family

A
  • Myc oncogene family consists of 3 members
    • C-MYC, MYCN and MYCL which encode c-Myc, N-Myc and L-Myc respectively
      • Belong to a family of TF’s which regulate transcription of 15% of the genome
    • These were originally discovered in the avian myelocytomatosis virus (AMV)
21
Q

What are the major effects of Myc?

A

Downstream effectors include

  • Ribosomal biogenesis
  • Protein translation
  • Cell cycle progression + metabolism
  • Survival and immune surveillance
22
Q

What is the role of Myc in cancer?

A

The Myc oncogene will be overexpressed/activated in majority of human cancers by chromosomal translocation.

Myc will come under the control of foreign transcriptional promoters causing it to become activated

= deregulation of the oncogene + drives relentless proliferation

23
Q

How does Myc perform its role?

A

Encodes a helix-loop-helix transcription factor which dimerizes with its partner protein Max, to transactivate gene expression

24
Q

What is the link between burkitts lymphoma and Myc?

A
  • Burkitts lymphoma is associated with Epstein Barr Virus
  • Myc is commonly activated in Burkitt’s Lymphoma
  • All the BL cases carry one of the three characteristic chromosomal translocations
    • Myc gene is under foreign regulation of the Ig heavy chain
      • This causes c-myc expression to be deregulated
  • In all three translocations a region from one of these chromosomes is fused to a section of chromosome 8, switching MYC on
25
Q

Describe another example of chromosomal translocation which is responsible for oncogenes

A
  • CML patients carry the Philadelphia chromosome o t(9;22)(q34;q11) generating the BCR-ABL fusion protein
  • As a result of this translocation the tyrosine kinase activity of the oncogene ABL is constitutive = abnormal proliferation •
  • Therapeutic strategies for CML = Imatinib (Gleevac) 95% remission in early stage patients
    • This is a tyrosine kinase inhibitor
26
Q

What are tumour suppressors genes?

A

A gene whose normal activity prevents formation of cancer (acts like the car brake) usually through inducing cell cycle arrest or apoptosis.

  • This loss of tumour supressor gene function requires 2 hits (one in each allele) to have an effect on the protein and cause the tumour suppressor to lose its function
    • Hence defined as recessive genes
27
Q

Describe the historical perspective of tumour suppressor genes and their discovery

A
  • Fusion of normal cells with tumour cells yielded hybrid cells containing chromosomes from both parents 
  • These cells were not capable of forming tumours 
  • Genes derived the normal parents acted to inhibit and suppress tumour development
  • The first tumour suppressor gene was identified by studies of retinoblastoma – a rare childhood eye tumour
28
Q

What are examples of tumour suppressor genes?

A

Examples of tumour suppressors are known as anti-oncogenes (they can counteract their activity)

Tumour suppressor gene products will act as stop signs to uncontrolled growth, promote differentiation or trigger apoptosis

Therefore they are usually regulators of cell cycle checkpoints E.g RB1, differentiation (APC), or DNA repair (BRCA1)

29
Q

What is retinoblastoma?

A
  • This is a rare childhood cancer that affects 1 in 20,000 children
  • Immature retinoblasts will grow very fast and do not turn into mature retinal cells
30
Q

What does the eye of someone with retinoblastoma appear like?

A
  • An eye which contains a tumour will reflect light back in a white colour
    • This is often called cats eye appearance (technical term leukocoria)
31
Q

What are the two forms of the retinonblastoma disease?

A

There are two forms of the disease

1) Familial/Hereditary (40%)
2) Sporadic (60%)

32
Q

Where is the hereditary mutation for retinoblastoma?

A

The hereditary mutation is on chromosome 13 (13q14), the retinoblastoma 1 gene

33
Q

How does Rb support Alfred Knudson’s 2 hit hypothesis?

A

Most patients will have an inherited mutation (1st Hit) and then acquire a second mutation in the remaining functional copy of the tumour suppressor gene (2nd Hit)

In the sporadic form there is no inheritance, the patient had to acquire two separate hits one in each allele resulting in disease presentation at a later age

34
Q

What are mutations which inactivate tumour suppressor genes called?

A

Loss-of-function mutations

Point mutations or small deletions which will disrupt the function of the protein encoded by the gene

35
Q

What does loss of heterozygosity mean?

A

Term used to describe the process which leads to inactivation of the second copy of the tumour supressor gene

A heterozygous cell will recieve a second hit in its remaining funcitonal copy of the tumour supressor gene = homozygous for mutated patient

36
Q

What is the structure of retinoblastoma?

A
  • The Rb gene family codes three pocket proteins = Rb/(p105/110), p107 and Rb2/p130
  • The large pocket protein will bind E2F
  • Functions in apoptosis and the cell cycle (through stimulation or inhibition of interacting proteins)
37
Q

What is the role of the retinoblastoma protein in the cell cycle?

A

Retinoblastoma will regulate the cell cycle by inhibiting progression to G1/S phase

Normally it binds to E2F preventing it from translocating to the nucleus and transcribing genes required for S phase

38
Q

What is the first cyclin that is synthesised in the cell cycle?

A

Cyclin D is the first cyclin which is synthesised in the cell cycle, it drives progression through G1 together with cdks4/6

39
Q

Explain how retinoblastoma protein activity is regulated?

A
40
Q

How can RB become inactivated?

A

Can be inactivated by phosphorylation, mutations, partial deletions and viral oncoprotein binding

41
Q

What happens when it becomes inactivated?

A

• Viral inactivation found in small DNA tumour viruses mainly disrupt E2F binding or destabilisation of Rb 

  • Adenovirus – E1A 
  • Papilloma – E7 
  • Polyoma – Large T antigen
    • In cancer cells RB phosphorylation is deregulated throughout cell cycle
    • As direct consequences E2F transcription factors can induce deregulation of the cell cycle
    • Without RB on watch, cells will move through G1 into S phase and are not subjected to normal checks
42
Q

What is p53?

  • First tumour suppressor identified
  • Known as guardian of the genome
A

Involved in sensing DNA damage and regulates cell death and apoptosis

  • Speciallises in preventing the appearance of abnormal cells
  • P53 is mutated in 30-50% of cancers
  • Frequent mutation of p53 tumour cell genomes suggests that tumour cells try to eliminate p53 function before they can thrive
43
Q

What is the structure of p53?

A

• Protein has an amino transactivation domain, a central DNA binding domain, a tetramerization domain and a carboxyl regulatory domain • Can bind to around 300 different gene promoter regions-main role as a transcription factor

44
Q

How does MDM2 regulate p53?

A

Normally levels of p53 protein are low in the cells due to MDM2

  1. In unstressed normal cells p53 and MDM2 will move between the nucleus and the cytosol
  2. MDM2 will bind p53 and form a complex in the nucleus
  3. MDM2 modifies the carboxyl terminus of p53 an targets it for degradation by the proteasome
  4. WT p53 has a short half life
45
Q

How is the p53 tumour suppressor activated?

A

Stress signals will activate p53 Signals will be sensed by KINASES which PHOSPHORYLATE p53 Phosphorylation of p53 disrupt interaction between it + MDM2 p53 can this regulate genes involved in DNA damage repair, apoptosis and cell cycle arrest

46
Q

Give a stress signal example of a p53 activation

A

o E.g ionizing radiation signals through two kinases ATM/ATR activate oncogenes e.g Ras induce activity of p14arf responsible for sequestering MDM2

47
Q

Describe how targeting p53 is a efficient therapeutic strategy

A

Mutational inactivation is considered to be one of the most common molecular mechanisms behind p53 dysfunction More than half of tumours have loss of function mutations of p53 Therefore different strategies were aimed at correcting the p53 mutation and restoring wild-type function

48
Q

List some examples of therapeutic strategies

A

Retrovirus could integrate a stable form into the genome of infected cells It has shown that retro-virus mediated gene transfer of wild type TP53 gene into human lung tumour and xenograft models = leads to inhibition of tumour cell growth

49
Q

Give examples of P53 cancer inhibitors

A

 PRIMA-1, Restores mutant p53 by modifying the thiol groups in the core domain of the protein  Nutlin- is a potent MDM2 antagonist  RITA binds to p53 and can restore mutp53 activity  Inhibitors of CRM1 result in nuclear accumulation of p53