Nucleus Flashcards

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1
Q

What is the nucleus

A
  • A memebrane bound organelle in eukaryotic cells containing DNA
  • And the cells control centre
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2
Q

Define eukaryote

A
  • An organism whose cells have a memebrane-bound nucleus
  • Including animals, plants, fungi and othe unicellular organisms
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3
Q

What is part of the structure of the nucleus

A
  • Contains DNA arranged in chromosomes
  • Surrounded by the nuclear envelope/membrane
  • Nuclear lamins support the nuclear membrane
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4
Q

Define DNA

A
  • A polymer composed of two polynucleotide chains that coil around each other to form a double helix
  • Carries genetic instructions for development, functioning, growth, and reproduction
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5
Q

What is the nuclear envelope/membrane

A
  • It is made up of a phospholipid bilayer that surround the nucleus
  • Which encloses the genetic material
  • Outer membrane is continuous with rough ER
  • Inner membrane contains proteins that act as anchoring sites for chromatin and for the nuclear lamina
  • The space inbetween the membranes is called perinuclear space, where proteins made get transported to
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6
Q

What is nuclear lamina

A
  • It is in the nuclear side of the inner nuclear membrane
  • Meshwork of interconnected protein subunits called nuclear lamins
  • The lamins are intermediate filament proteins plymerised into 2D lattice
  • Gives shape and stability to envelope
  • attached to nuclear pore complexes NPC and integral proteins on the inner membrane
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7
Q

Why does the nuclear envolope contain pores

A
  • To control the movement of substances in and out of the nucleus
  • E.g. RNA is selectively transported into the cytoplasm
  • Proteins are selectively transported into the nucleus
  • Regulating gene expression
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8
Q

Why is the nucleus important

A
  • Separates fragile chromosomes from cell contents – crucial for proper function of cell
  • DNA replication, transcription and RNA processing - all in the nucleus
  • Separates RNA transcription in the nucleus from translation machinery in the cytoplasm
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9
Q

What is the nucleolus

A
  • When one or more nucleoli are found inside the nucleus
  • Most prominent in cells that are synthesising large amounts of protein
  • Sites at which ribosomes are reassembled and ribosomal RNA is transcribed
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10
Q

What happens to the nuclear envelope during mitosis

A
  • Nucleus disassembles, lamina depolymerises & NPCs disperse in cytosol (phosphorylation of lamins and NPC proteins)
  • Some NPC proteins bound to nuclear import receptors – important in reassembly of NPCs at end of mitosis
  • Nuclear envelope membrane proteins disperse throughout ER membrane
  • Later in mitosis, nuclear envelope reassembles close to surface of daughter chromosomes (dephosphorylation of lamins)
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10
Q

What is around and inside nuclear pores

A
  • Nuclear basket
  • Inside are proteins called neoporins that create eightfold rotaional symmetry
  • Inside the neoporins is filled with numerous repeats of unstructured phenylalanine-glycine proteins that create a mesh inside the NPC
  • The mesh acts as a sieve - restricting diffusion of large macromolecules but smaller ones can pass through
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11
Q

How do large macromolecules go through NPCs

A
  • They need import or export signals
  • Other proteins contain both nuclear localisation signals (NLS) and nuclear export signals (NES)
  • Relative rates of import and export determine steady-state localisation
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12
Q

What are nuclear localisation signals

A
  • Responsible for the selectivity of active nuclear import process
  • Most commonly - 1 or 2 short sequences rich in lysine and arginine (+ charge) in aa - sequence varyies for different proteins
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13
Q

What are nuclear import receptors

A
  • They are karyopherins (proteins that are involved in transporting molecules between the cytoplasm and the nucleus)
  • Nuclear localization signals must be recognized by nuclear
    transport receptors (import or export receptors) to get in or out
  • Receptors can use adaptor proteins that form an import
    receptor/NLS bridge (for proteins that dont fit into an import receptor)
  • Have FG binding sites
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14
Q

What happens in the NPC when cargo has to go through

A
  1. Nuclear import receptors recognise nuclear localisation signals on the cargo proteins and bind (or use an adaptor protein to bind)
  2. The FG (phenylalanine and glycine) binding sites on the import receptors bind to FG repeats found in the NPC mesh
  3. This binding disrupts interactions between the repeats dissolving the mesh
  4. Allowing the receptor-cargo complex to diffuse into the NPC pore
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15
Q

What are nuclear export signals

A
  • Same as nuclear localisation signals but required for exporting cargo
16
Q

What direction do import and export receptors move cargo proteins

A
  • Import receptors bind their cargo molecules in the cytosol, release them in the nucleus, and are then exported to the cytosol for reuse
  • Export receptors bind cargo in nucleus, release them in cytosol, then go back into nucleus
17
Q

What does Ran-GTP and Ran-GDP do

A
  • Ran-GTP binds to the nuclear import receptor in the nucleus (after delivering cargo) to allow the receptor to go back into the cytosol for reuse
  • Once back in the cytosol Ran-GTP is hydrolysed into Ran-GDP (by Ran GAP) and as a result dissociates from the receptor
  • Then the import receptor is ready for another cargo protein to join
18
Q

What deos a DNA nucleotide consist of

A
  1. Nitrogenous base
  2. Five carbon sugar (deoxyribose)
  3. Phosphate group
19
Q

Which bases are prymadines

A
  1. Cytosine
  2. Thymine
  3. Uracil
20
Q

Which bases are purines

A
  1. Adenine
  2. Guanine
21
Q

What are the differences between RNA and DNA

A
  1. Ribose sugar vs deoxyribose sugar
22
Q

How do nucleotides join together

A
  • By consensation reactions
  • Creating phosphodiester bonds
  • Between 5’ triphosphate and 3’ hydroxyl group on adjacent carbons
23
Q

Characteristics of double helix

A
  • Nucleotides are covalently linked
  • Hydrogen bonds between bases
  • Strands run anti-parallel
24
Q

Base pairing

A
  • 2 H bonds between A and T
  • 3 H bonds between G and C
  • Purine is paired with a prymidine because it is most energetically favourable
25
Q
A
26
Q

What are chromosomes

A
  • 23 pairs of chromosomes
  • Single linear DNA molecule + proteins the fold the DNA into compact structure
27
Q

What is a centromere

A
  • The middle of a sinlge chromosome and where sister chromatids join together
  • Keeps chromosomes properly aligned during cell division
28
Q

What are telemeres

A
  • Repetitive stretches of DNA located at the ends of linear chromosomes
  • Protect the ends of chromosomes to keep them from unravelling
  • Telomeres lose a bit of their DNA every time a cell divides. When all of the telomere DNA is gone, the cell cannot replicate and dies
  • WBC and other rapidly dividing cells have an enzyme (Telomerase) that prevents their chromosomes from losing their telomeres – cells live longer
29
Q

What is heterochromatin

A
  • Chromatin regions that are condensed during interphase and transcriptionally active
  • Found in the nucleus
30
Q

What is euchromatin

A
  • Chromatin regions that are decondensed and DNA sequences are being transcribed into RNA
31
Q

What are histones and what do they do

A
  • It is a complex of eight histone
    proteins
  • A histone octamer forms a protein core around which the
    double-stranded DNA is wound
32
Q

What are looped domains

A
  • Folded chromatin fibre are attached to proteins forming a chromosome scaffold
  • Looped domains can unwind for gene expression or for histone-modifying emzymes, chromatin remodelling complexes or RNA polymerase
33
Q

What structures and functions do we have to protect our DNA

A
  1. Telomeres - prevent degredation
  2. Nuclear pores - controls/monitors what passes through the nucleus
  3. Nuclear localisation signal - contols what cones in and out of nucleus
  4. Condensation of chromatin - controls what section of DNA gets transcribed
34
Q

What structure is responsible for making ribosomes

A

Nucleolus

35
Q
A