Morphology and Biology of Viruses Flashcards

1
Q

describe the main criteria for virus classification

A
  • Type and organisation of genome: DNA/RNA, single or double stranded, genome relatedness
  • Viral replication strategy: eg does it go through reverse transcription?
  • Structure and size of the virion: envelope, most viruses also icosahedral
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2
Q

Describe further criteria for viral classification

A

Host range
Tissue tropism
Pathogenicity
Mode of transmission
Physiochemical properties
Antigenic properties of the virion

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3
Q

Describe HIV

A

Envelope
Viral gp120 & gp41
2 copies of RNA
Reverse transcriptase
Integrase
Protease

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4
Q

Describe the hep viruses and the current vaccines for them

A

A: Enteric transmission
B, C, D: Non enteric transmission, persistent
E: Non enveloped, Icosahedral, single stranded + sense RNA
There are vaccines for Hep A and B
There is a Hep E vaccine used in china
Hep B vaccine is also used for hep D
Currently hay trials for therapeutic + prophylactic hep C vaccines

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5
Q

Describe Hep A in detail

A

Most common viral hepatitis
Picornaviridae family
Naked (no envelope), icosahedral
Single stranded RNA
+ve sense
Incubation (days): 15-45, mean 25
Onset: Acute, mainly infects children, young adults
Transmission: Foecal-oral
Sexual: possible but less likely

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6
Q

Describe Hep B in detail

A

Hepadnaviridae family, enveloped, 42nm
Icosahedral nucleocapsid
Circular DNA partially double stranded
Complete virus and incomplete particles
Tubular filaments & spherical particles composed of envelope proteins – hep B surface antigen
Incubation (days): 30-150, mean 75
Onset: Insidious or acute
Age preference: Young adults, babies, toddlers
Transmission: Faecal-oral, Percutaneous, Perinatal, Sexual
Can cause chronic and acute infection
Most people can fully recover in a few months.

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7
Q

Using percentages good clinical and epidemiological features of hepatitis B

A
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8
Q

Describe hepatitis D

A

Single stranded, negative sense, circular RNA
Viral envelope is made of HBAg
The virus requires Hep B virus to be present in the cell for its replication.
Infection can occur simultaneously or after hep B infection.
Transmission: contact with blood or other body fluids. Mother to child transmission at birth can also occur.

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9
Q

Describe hepatitis C

A

Flaviviridae family, enveloped, icosahedral
Single stranded RNA
NS1 non structural protein 1
E proteins are major envelope proteins of the virus
Incubation (days): 15-120, mean 50
Onset: Insidious, more common in adults
Transmission: Fecal-oral, though can also be Percutaneous, Perinatal, Sexual (though less likely)

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10
Q

Describe norovirus

A
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11
Q

Describe Rotavirus

A

GI infection: vomiting, diarrhea, abdo pain, fever
Most common in infants and young children
Once exposed symptoms take approx 2 days
No antivirals, but vaccines available – live oral vaccine

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12
Q

Describe the structure of rotavirus

A
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13
Q

What are the viral proteins for rotavirus and how does it replicate?

A

Structural proteins: VP1-VP7. Non structural: NSP1-NSP6
Infects and replicates in intestinal epithelial cells
Outmost layer has VP7 and VP4
These are important in virus attachment and entry

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14
Q

Describe the replication cycle for rotavirus.

A

Virus binds to receptors and enters cell by endocytosis
Virus loses its outer layer
Within virus structure dsRNA can replicate
This is because virus has a protein VP6 that acts as a channel and allows movement of RNA
Inside virus core there are VP1, VP2 and VP3
These are involved in transcription
Viral proteins are made in infected cell cytoplasm
Core assembly of single and double shelled particles in cytoplasm

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15
Q

Describe measles symptoms

A

Very contagious, spread by droplet infection
Fever, cough, runny nose, red eyes, sore throat
2 days later small white (Koplik’s) spots may appear in the mouth.
3-5 days after symptoms start: rash on face and spreads to neck, trunk, arms, legs, and feet.
When the rash appears, a person’s fever may spike
After a few days, the fever subsides and the rash fades.

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16
Q

Describe the structure of measles virus

A

Enveloped
RNA single stranded
Negative sense
Paramyxoviridae family
Pleomorphic (meaning occurs in many forms)
100-300nm

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17
Q

Describe mumps

A
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18
Q

Describe the structure of the mumps virus

A

Paramyxovirus
pleomorphic
enveloped
helical nucleocapsid
ss RNA linear genome

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19
Q

Describe Rubella

A

Togavirus family, enveloped
single stranded RNA, icosahedral
An acute viral disease causes fever and rash
mild disease in children and young adults
Rash/fever for 2-3 days
Spread by coughing and sneezing

20
Q

Describe Rubella

A

Togavirus family, enveloped
single stranded RNA, icosahedral
An acute viral disease causes fever and rash
mild disease in children and young adults
Rash/fever for 2-3 days
Spread by coughing and sneezing

21
Q

What is congenital rubella?

A

Birth defects if acquired by a pregnant woman, esp early pregnancy:
Deafness
Cataracts
heart, liver and spleen defects
Damage to foetal brain

22
Q

Describe adenoviruses

A

Different serotypes exist, most cause resp illness
May also cause gastroenteritis, conjunctivitis, cystitis, rash.
No envelope, icosahedral
DNA double stranded, linear

23
Q

Describe papillomavirus

A

No envelope, icosahedral
Circular, double stranded DNA
Papovaviridae family
Different serotypes
Some cause infections in the genital tract or cervical cancer

24
Q

Describe the structure of parovirus

A

Non-enveloped, single stranded DNA
small 22nm
Nucleocapsid icosohedral
Incubation period between 10-21 days
The virus has a receptor which allows it to attach to erythrocyte progenitor cells
Parvovirus B19 inhibits erythropoesis
Shortened life span of RBCs <120 days, viraemia present (virus in blood)

25
Describe the clinical manifestations of parovirus
"slapped-cheek" rash, red rash on trunk and limbs. May have a low-grade fever, malaise a few days before the rash breaks out. Rash may itch. Resolves in 7-10 days Gloves and socks syndrome Arthropathy Transient aplastic crisis Chronic red cell aplasia Neutropenia, thrombocytopenia and pancytopenia
26
How is paro virus transmitted?
Respiratory route mother to the foetus transmission - this is more of a concern in the first trimester and if the mother does not have IgG antibodies against the virus No specific drug to treat Parvovirus B19 infection.
27
Describe influenza
Airborne virus producing feverish illness Causes serious illness in immunocompromised Orthomixoviridae (family) lipid envelope derived from host cell membrane.
28
Label and describe this influenza structure
These are embedded in the lipid bilayer of the viral envelope. Matrix protein 2, M2= ion channel protein The ribonucleoprotein complex comprises viral RNA segments associated with the viral proteins. The matrix (M1) protein is associated with both ribonucleoprotein and the envelope.
29
Describe the influenza subtypes
Type A - Most serious, affects mammals and birds Genetic cross-over between strains can lead to pandemic Subtyped according to its surface Ags- (HA) and (NA) Type B: affects humans, minor outbreaks C: affects humans, endemic, similar to common cold
30
Describe the replication cycle of influenza
Uses haemagglutinin to attach to sialic acid, enters by endocytosis Virus envelope fuses w endosome, triggering uncoating Viral nucleocapsid released into cytoplasm Copies of viral RNA and mRNA made, mRNA translated in cytoplasm Early viral proteins required for replication/transcription are transported back to the nucleus. Late in infection cycle, M1 and NS2 proteins facilitate nuclear export of newly made viral ribo nuclear proteins. RNA segments assembled within nucleocapsid and bud at plasma membrane
31
How does the influenza virus mutate?
Surface Ags of Influenza A mutate rapidly bc: Viral RNA polymerase involved in replication has low selectivity and no proof reading mechanism Therefore mutants are generated and spread rapidly. Two patterns of mutation: antigenic drift and antigenic shift
32
Describe antigenic drift associated with influenza
Continual viral mutation Mutations are often minor with no effect on function Changes accumulate to create new “drifted strains” Drifted strains produce illness Some strains co-exist Occurs in around 2 to 8 years
33
Describe antigenic shift associated with influenza
Type A only Genetic reassortment: mixing genetic material between strains, when they infect the same host Creates novel strains ppl dont have immunity to. Rapid spread - pandemic Mixed strains from diff species= mas virulent/fuera control
34
What is the current strategy in dealing with the different strains of influenza?
Global Influenza Network estimate the strain of virus before the following season and recommend vaccines Limitations: errors in the estimate manufacturing difficulties time constraints, lack of resources antigenic drift continues (vaccine mismatch)
35
Explain how HIV infects and replicates inside a host cell.
HIV Gp120 protein binds to CD4. CCR5 T co receptor binds Gp120, enabling HIV to enter the T helper cell. Reverse transcriptase copies viral RNA-> double stranded proviral DNA, which then undergoes ps. Virus envelope proteins are also translated, transported in the G.app.Virus envelope proteins incorporate onto cell membrane. Virus particle buds from the host cell, becoming wrapped in the cell membrane, producing a new viral envelope.
36
What are the options for a primary viral infection?
Replication at the site of entry Remain at the site of entry Examples: Influenza, Rhino virus Replicate at site of entry then spread, eg VZ virus
37
Describe secondary infections
Infection with a 2nd organism, eg Candida albicans (thrush) if patient given antibiotics that have removed the protective flora 2* infections can also happen following an infection eg HIV that compromises immunity Bacterial pneumonia can also happen after viral respiratory tract infections in a healthy individual.
38
Outline the types of viral entry
Faecal oral route: Norovirus, Rotavirus Blood: HIV, Hepatitis B and C Body fluids: Epstein Barr virus Resp tract: Influenza, Rhinovirus, VZ virus Skin cuts: Papilloma, Mol.contagiousum (Poxvirus) Sexual: Papilloma, Herpes simplex virus, HIV Animal/insect bites: Lassa fever
39
Which viruses cause acute and which viruses cause chronic disease?
Acute: Rabies, Rhinovirus, Influenza, Rotavirus Chronic: Hep B and C, but in some cases infection can be cleared
40
How can prenatal viruses be more pathogenic?
Vertical transmission: Foetus unable to mount immune response. Mode of entry also via placenta eg rubella can be transmitted--> congenital rubella Parvovirus infection in pregnancy – most of us have Abs to Parvovirus B19. Infection can show slapped cheek appearance – during early stages of pregnancy risk of hydrops fetalis.
41
Describe the ways in which viruses can avoid detection by the immune system
Latency: After primary infection, enter sites eg dorsal root ganglia, remain latent. Don't replicate fully, evade detection. Replicate in privileged sites: HIV. Cytomegalovirus: downregs MHC I, hinders Ag presentation Release decoy particles: diverts response, eg Hep B
42
Describe Papillomavirus
Non-enveloped Circular double stranded DNA More than 100 HPV types identified High risk: HPV 16, 18, 31, 45 Linked to development of cervical carcinoma and other malignancies
43
How does HPV infect our cells
Virus infects epithelial cells, which have dif layers and differentiate As cells leave basal layer and move up they stop dividing- If cell is not replicative virus may struggle to replicate So, virus infects basal layers, migrates to cell nucleus Genome established, replication can occur
44
Describe the cancer-causing mechanism with HPV
HPV encodes early genes(E2,6,7) + late genes(L1,2) E6 interferes w P53 tumour suppressor protein E7 interferes w retinoblastoma tumour suppressor E2 inhibits E6 and E7 (cancer causing) expression As HPV integrates into host genome, E2 viral gene splits E2 ya no functions, E6 and 7 expression not inhibited Uncontrolled E6/E7 oncoproteins=epithelial cells cannot leave the cell cycle E6 also activates the telomerase gene Cancer cells make telomerase which keeps telomere intact. Cells do not age and continue to divide
45
Describe Zika
Flaviviridae family Enveloped, single strand +sense RNA Small – 50nm Transmitted by mosquitoes Number of infants born with microcephaly high in areas where Zika virus was first reported- first trimester at greatest risk.