Molecular Basis Of Inheritance Flashcards
_____acts as a genetic material in some viruses .
RNA
RNA mostly functions as a __.
Messenger
The determination of complete nucleotide sequence of human genome during last decade has set in a new era of _____.
Genomics
DNA is a long polymer of ___.
Deoxyribonucleotides
The length of DNA is usually defined as _____ present in it .
Number of nucleotides (or base pairs present )
A pair of nucleotides are referred to as ____.
Base pairs
A bacteriophage - phi * 174 has ____nucleotides .
5386
Bacteriophage -lambda hs ____ base pairs
48502
E.coli has _____BASE pairs .
4.6 * 10_6 ( 4600000)
Haploid content of human DNA has __base pairs .
3.3 * 10_9
Which bacteriophage has 5386 base pairs ?
Phi*174
A __has 3 components -a N base , a PENTOSE sugar and a phosphate grp .
Nucleotide
Name the N bases that are purines .
Adenine
Guanine
Name the N bases that are pyrimidine .
Cytosine
Uracil
Thymine
In case of pyrimidines , __is common in both DNA and RNA .
Cytosine
In case of pyrimidines , __is present in RNA ,in place of ____ .
Uracil
Thymine
A N base is linked to the __of __C pentose sugar through a __linkage to form a ___ .
OH
1’ C
N glycosidic linkage
Nucleoside
Name a nucleoside which is exclusively present in DNA and in RNA ?
DNA- deoxythymidine
RNA - uridine
Adenosine and deoxyadenosine are __.
Nucleosides
When a phosphate grp is linked to ____ of ____C of a ____through ____linkage , a corresponding nucleotide is formed .
OH
5’C
Nucleoside
PHOSPHOESTER linkage
2 nucleotides are lined through __ to form a _____ .
3’-5’ phosphodiester linkage
Dinucleotide
A polynucleotide is formed has at one end a __ at 5 ‘ end of sugar , which is referred to as 5’ -end of polynucleotide chain .
Phosphate moiety
At The other end of polynucleotide chain , the sugar has a ____ of 3 C grp which is referred to as 3’ end of the polynucleotide chain .
Free OH
The back bone of a polynucleotide chain is formed due to __and ____ . The ____project from the backbone .
Sugar
Phosphates
N bases
In RNA ,every nucleotide residue has an additional ____ present at ____ position in the RIBOSE .
-OH grp
2’position
Other name of thymine -
5-methyl uracil
DNA as an acidic substance present in the nucleus was first identified by ____in ___ .
Friedrich meischer
1869
Name given by friedrich meischer to DNA .
Nuclein
It was only in ____that ___and ____ based on ____ proposed a very simple but famous double helix model for the structure of DNA .
1953
James Watson
Francis crick
X-diffraction data
X-ray diffraction data was produced by _and _.
Maurice Wilkins
Rosalind franklin
One of the hallmarks of the proposition given by Francis and rick was -
Base pairing btw 2 strands of polynucleotide chains
The proposition given by Francis and crick was based on the observation of _____
Erwin chargaff
Observation of chargaff -
For double stranded DNA ,
Ratios btw ADENINE and THYMINE and GUANINE and CYTOSINE are constant and equals 1 .
The salient features of double helix structure of DNA -
Made of 2 polynucleotide , where backbone is sugar-phosphate and bases project INSIDE .
Chains have anti-parallel polarity
Bases are paired through H-bonds
2 chains are coiled in a right-handed fashion . Pitch of helix is 3.4nm .
The plane of one base pair stacks over the other in double helix .
Adenine forms ____ H-bonds with thymine and cytosine forms ____ H-bonds with guanine .
2
3
Always a purine comes ____To pyrimidine .
Opposite
The pitch of the helix is ____ , and there are __ bp in each turn .
3.4nm
10
The distance btw a bp in a helix is ______ .
0.34nm
Which 2 features confer stability of the helical structure .
1) H-bonding
2) plane of one base pair stacks over the other in double helix
____ proposed the Central Dogma in molecular biology .
Francis crick
What does the central dogma state ?
Genetic info flows from DNA —> RNA —>protein
In some ____ , the flow of info is in the reverse direction , ie from RNA to DNA .
Viruses
Length of DNA double helix -
2.2 m ( 6.6* 109 bp. * 0.34 *10-9 m/bp)
No of base pairs in humanDNA .
6.6 * 10_9 bp
Length of E.coli DNA -
1.36 mm
How is the DNA arranged in a prokaryotic cell such as E. Coli ?
The DNA is not scattered throughout the cell . DNA being negatively charged is held with some proteins (+ve charged ) in a region termed as NUCLEOID .
The DNA in _____ is organised in large loops held by proteins in prokaryotes .
Nucleoid
The type of DNA organisation in eukaryotes -
Complex
There is a set of +ve charged , basic proteins called HISTONES .histones are organised to form a unit of 8 molecules called HISTONE OCTAMER .the -ve charged DNA is wrapped around the +ve histone octamer to form a nucleosome .
The proteins ( which constitute the histone octamer ) acquire charge depending upon the _____
Abundance of amino acids residues with charged side chains .
Histones are rich in ___amino acid residues __and ____ .
Basic
Lysine
Arginine
Amino acid residues , arginine and lysine carry _____charge in their ____.
+ve
Side chains
Histones are arranged to form a unit of ______ molecules .
8
The -ve dna is wrapped around + histone octamer to form a structure called _____.
Nucleosome
A typical nucleosome contains ______ bp of DNA helix .
200
Nucleosomes constitute the repeating unit of a structure in nucleus called ________ .
Chromatin (thread -like coloured bodies seen in nucleus )
The _____ are seen as BEADS ON STRING when viewed under electron microscope .
Nucleosomes ( in chromatin )
The beads on string. Structure(of nucleosome) in chromatin is packaged to form ______ that are further coiled and condensed at _____ of cell division to form _______.
Chromatin fibres
Metaphase
Chromosomes
The packaging of chromatin at higher level req additional set of proteins that collectively are referred to as _______ .
Non-histone chromosomal proteins ( NHC )
In a typical nucleus , some region of chromatin are loosely packed and stains light . They are called _______ .
Euchromatin
The chromatin that is more densely packed and stain dark are called ____.
Heterochromatin
_____is said to be transcriptionally active chromatin , whereas _____is inactive .
Euchromatin
Heterochromatin
Discovery of nuclein By meischer and principles of inheritance by Mendel were almost at the same time but ____ took long to be discovered and proven .
DNA acts as the genetic material
By ____ , the quest to determine the mechanism for genetic inheritance had reached the molecular level .
1926
In ____ , ______ gave the transforming principle .
1928
Fredrick Griffith
Fredrick Griffith in a series of experiments with _____witnessed a miraculous transformation in. The bacteria .
Streptococcus pneumoniae ( bacteria responsible for causing pneumonia )
During the course of Griffith’s experiment , bacteria had changed in ____form .
Physical
When streptococcus pneumoniae are grown in a culture plate , some produce ______ while others produce ______ .
Rough colonies
Smooth shiny colonies
Smooth shiny colonies were produced because the S-strain bacteria have ______while R-strain does not .
Mucous polysaccharide coat
Effect of injecting S -strain , R- strain , S-strain heat killed , S-strain heat killed + R-strain .
S—— mice die
R——mice live
S-heat killed —— mice live
S-heat killed + R-strain ——mice die
Griffith recovered _____from the dead mice .
LIVING S-bacteria ( though he injected heat killed S -strain + Liv R strain )
What did Griffith conclude ?
R-strain bacteria had somehow been transformed by the heat -killed S-strain
According to Griffith , some transforming principle transferred from heat killed S strain , had enabled ____ to _____ and become virulent .
R-strain
Synthesise a smooth polysaccharide coat
__was not defined from Griffith’s experiments .
Biochemical nature of genetic material
Prior to the work of __, ____and ____ , the genetic material was thought to be a protein .
Oswald Avery
Colin Macleod
Maclyn McCarty
Avery , Macleod and McCarty worked to determine the ____.
Biochemical nature of ‘transforming principle “ in Griffith’s experiment .
Avery , Macleod and McCarty worked in the year ___.
1933- 1944 ( after Griffith - 1928)
What did Avery , macleod and McCarty do ?
They purified biochemicals (proteins ,DNA and RNA ) from heat-killed S-cells to see which ones could transform live R cells into S- cells .
Avery , Macleod and McCarty discovered that DNA alone from ____ caused ____ to become _____ .
S-bacteria
R-bacteria
Transformed
Avery , Mac and Mac also discovered that ___and ____ did not affect transformation .
Protease (protein -digesting enzyme )
RNase ( RNA digesting enzyme )
Digestion with ______ did inhibit transformation .
DNase
The unequivocal proof that DNA is the genetic material came from __ in the year ____ .
Hershey and chase
1952
Alfred Hershey and Martha chase worked on _____ .
Bacteriophage ( viruses that infect bacteria )
Hershey and chase worked to discover whether it was __or ___ from ___ that __.
Protein
DNA
Viruses
Entered the bacteria
In Hershey’s experiment , the ___attaches to the bacteria and its genetic material enters _____ , which treats the viral genetic material as if ______ and subsequently manufactures more viruses .
Bacteriophage
Bacterial cell
It was its own
Hershey and chase grew some viruses on a medium that contained _____ and some others on medium containing ___>
Radioactive phosphorus
Radioactive sulphur
Viruses grown in presence of radioactive phosphorus contained ___but not __ becoz ____ . And viruses grown on radioactive sulphur Contained _________ but not ___.
Radioactive DNA Radioactive proteins DNA contains P but protein does not . Radioactive Protein Rad DNA
After radioactive labeling of DNA and proteins in chase’s exp , the next step was -
Infection
Radioactive phages were allowed to attach to E.coli bacteria
What were the 3 steps in Hershey and chase’s exp ?
1) infection - radioactive phages were allowed to attach to E.coli
2) blending - the viral coats were removed from the bacteria by agitating them in a blender .
3) centrifugation - the virus particles were separated from bacteria by spinning in a centrifuge
______ indicated that DNA was the genetic material that passed from virus to bacteria in Hershey and chase’s exp .
Bacteria which was infected with virus that had radioactive DNA were radioactive .
In chase and Hershey’s exp , bacteria that were infected with viruses that had radioactive protein were _____.
Not radioactive
In _____, RNA is the genetic material .
SOME viruses
Give a few examples of viruses where RNA is the genetic material .
TMV
QB bacteriophage
A molecule that can act as a genetic material must fulfill the following criteria -
1) able to generate its own replica ( replication )
2) stable chemically and structurally
3) must provide the scope for slow changes (mutation) that are req for evolution .
4) able to express itself in the form of Mendelian chars
__ has the ability to direct its duplication (1st criteria of genetic material ) . __fail to fulfill this criteria .
Both DNA and RNA
Proteins
_____as one of the properties of genetic material was very evident in Griffith’s transformation principle ‘ itself that ______ .
Stability
Heat which killed the bacteria did not destroy some of the properties of genetic material
The 2 strands of DNA being complementary if separated by heating come together when appropriate conditions are provided . T/F
T
____grp present at every nucleotide in RNA is a reactive grp and makes RNA LABILE and EASILY DEGRADABLE .
2’-OH
RNA is also known to be ____ , hence reactive .
Catalytic
DNA as compared to RNA is chemically __and structurally _____ .
Less reactive
More stable
______confers additional stability to DNA .
Presence of thymine at the place of uracil
__is able to mutate .
Both DNA and RNA
__DNA /RNA mutates at a faster rate .WHY ?
RNA
Being unstable
Viruses having __and ____ mutate and evolve faster .
RNA genome
Shorter lifespan
____can directly code for the synthesis of PROTEINS ., hence can easily express the characters .
RNA
_is dependent on ____for synthesis of proteins .
DNA
RNA
_has evolved around RNA .
Protein synthesizing machinery
DNA being ____ is preferred for ____ . For ____ RNA is better .
More stable
Storage of genetic info
Transmission of genetic info
___Was the first genetic material . __evolved around it
RNA
Essential life processes ( metabolism , translation , splicing )
RNA being ___ was unstable . Therefore DNA has evolved from RNA with chemical modifications that make it more stable .
Catalytic
DNA being _____ further resists changes by evolving a process of repair .
Double stranded and having complementary strand
“ it has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material “ . This statement was given by ____ in the year ___ .
Watson and crick
1953
It is now roved that DNA replicates ____.
Semiconservatively
Semiconservative nature of DNA replication was shown in ___ and subsequently in ____ , such as ____ and ______ .
E. Coli
Higher organisms
Plants
Human cells
_____and _____ performed the exp to prove semiconservative nature of DNA replication n the year ____ .
Mathew messelson
Franklin. Stahl
1958
Meselson and stahl grew E.COLI in a medium containing ___ as the only __source for many generations . The result was ____ .
15-NH4Cl ( 15-N is the heavy isotope of N)
N2
15-N was incorporated into newly synthesised DNA (as well as other N containing compounds )
The heavy DNA molecule in meselson and Stahl’s exp could be distinguished from the normal DNA by ____ in ____ .
Centrifugation
CsCl ( cesium chloride ) density gradient
N-15can be separated from N-14 only based on _____ . Why ?
Only based on densities .
Becoz it is not a radioactive isotope
The 2nd step in meselson’s exp -
Transferred the cells into a medium with normal 14-NH4Cl and took samples at various definite time intervals as the cells multiplied and extracted the DNA that remained as double-stranded helices .
The various samples were separated independently on CsCl gradients to measure the densities of DNA .
In meselson’s exp , DNA that was extracted from the culture one generation after the transfer from 15N to 14N medium (ie,. After 20 mins ) had a _density .
Hybrid or Intermediate
DNA extracted from the culture after another generation , after 40 mins was composed of _____ .
Equal amts of hybrid DNA and of ‘light’ DNA
Exp similar to meselson and stahl’s were performed by ______ in ____ .
Taylor and colleagues
1958
Exp similar to meselson’s involving use of ____ to detect distribution of newly synthesised DNA in the chromosomes was performed on ____ by TAYLOR .
Radioactive thymidine Vicia faba ( faba beans )
In living cells , such as E. Coli , the process of replication requires a set of ____ .
Catalysts ( enzymes )
The main enzyme used for replication is called -
DNA dependent DNA polymerase
Why is the main enzyme of replication called - DNA dependent DNA polymerase ?
Since it uses a DNA template to catalyse the polymerisation of deoxynucleotides
DNA dependent DNA polymerase is a __enzyme as it has to catalyse polymerisation of a large number of nucleotides in a very short time .
Highly efficient
E .coli that has only _____ bp completes the process of replication within ____ minutes . Which means avg rate of polymerisation has to be approx __.
4.6*10_6
18 mins
2000bp/s
These polymerase have to be highly ___ becoz any mistake during replication would result into ____.
Accurate
Mutations
Energetically ,replication is a __process .
Very expensive
___serves dual purpose in replication .
Deoxyribonucleoside triphosphate
Which 2 purposes does depxyribonucleoside triphosphate serve in replication ?
1) acts as the substrate
2) provide energy for polymerisation rxn ( the 2 terminal phosphates in a deoxynucleoside triphosphates are high energy phosphates , same as case of ATP )
In addition to DNA dependent DNA polymerase , many additional enzymes are also req to complete replication . T/F
T
For __DNA molecules , since the 2 strands of DNA cannot be separated in its entire length due t ___ , the replication occurs within a small opening of the DNA helix , referred to as _____ .
Long
Very high energy requirement
Replication fork
The DNA dependent -DNA polymerase catalyse polymerisation in _directions . Which ?
Only in 1 direction
5’—-> 3’
____creates an additional complication at the replication fork . What is its consequence ?
1 direction polymerisation by DNA dependent DNA polymerase ( 5’—>3’)
On one strand , the replication is continuous and on the other it is discontinuous .
Replication is continuous on template strand with polarity ____ and discontinuous on template strand with polarity ___.
3’—>5’
5’—>3’
The discontinuously synthesised fragments are later joined by the enzyme _____.
DNA ligase
The ___on their own cannot initiate the process of replication .
DNA polymerases
The replication initiates randomly at any place in DNA . T/F
F
The definite region in E.coli DNA where the replication originates are -
Origin of replication
It is because of the req of ori that a piece of DNA if needed to be propagated during recombinant DNA procedures , req a ____ .
Vector
The vectors provide _____ .
Ori
In eukaryotes , the replication of DNA takes place at ___ of the cell cycle .
S-phase
A failure in cell division after DNA replication results into ___ . Therefore _and ____ must be highly cocordinated .
Polyploidy ( a chromosomal anomaly )
DNA replication and cell division cycle
The process of ___ from one strand of __into ___ is termed as TRANSCRIPTION .
Copying info
DNA
RNA
The principle of ____ governs the process of transcription . Exception to this is ___ .
Complementarity
Adenosine complements now forms base pair with uracil instead of thymine .
Major Difference btw replication and transcription -
Replication -total DNA gets duplicated
Transcription-only a segment of DNA and only one of the strands is copied into RNA .
Defining the boundaries is necessary to demarcate the region and the strand of DNA in transcription/replication .
Transcription
Similarity btw transcription and replication .
Complementarity governs both processes
But in transcription , adenosine forms bp with uracil
Why both the strands are not copied during transcription -
1) if both strands act as template , they would code for RNA molecule with diff sequences , and in turn if they code for proteins , the sequence of amino acids in the proteins would be diff .
Hence, one segment of DNA would be coding for 2 diff proteins , complicating the genetic info .
2) the 2 RNA molecules if produced simultaneously would be complementary to each other , hence would form a DOUBLE STRANDED RNA . This would prevent RNA from being translated into proteins and the exercise of transcription would become futile .
What would happen if the 2 RNA’s are produced simultaneously ?
They would be complementary to each other , hence forming double stranded RNA . This would prevent RNA from being translated into proteins , thus the whole process of transcription would become futile .
A transcription unit in DNA is defined primarily by the 3 regions in the DNA :
A promoter
The structural gene
A terminator
The strand that has polarity __Acts as the template , and is also referred to as template strand .
3’—>5’
The strand which has polarity ___ coding strand .
5’—>3’
Why is there a convection in defining the 2 strands of DNA ?
Since the 2 strands have opposite polarity and the DNA -dependent RNA polymerase also catalyses polymerisation in only one direction , ie. 5’—> 3’ , one strand acts as template and the one with opposite polarity acts as coding .
The DNA dependent RNA polymerase catalyses polymerisation in ___ direction .
Only 1
5’—>3’
Which strand has the sequence same as RNA (except thymine at the place of uracil ) ?
Coding
Which strand is displaced during transcription ?
Coding
The strand which does not code for anything is called -
Coding strand
All the reference point while defining a transcription unit is made with ___ .
Coding strand
The ____and____flank the structural gene in a transcription unit .
Promoter
Terminator
The promoter is said to be located towards the __End of the ___gene . ( wrt coding strand )
5’ - upstream
Structural gene
It is the ___that provides binding site for RNA polymerase and it is the presence of a ____ in a transcription unit that also defines the template and coding strands .
DNA sequence
Promoter
By switching the position of ____with ____ , the definition of coding and template strands could be reversed .
Promoter
Terminator
The terminator is located towards the __end of the coding strand and it usually defines the ____ of the process of transcription .
3’ end -downstream
End
The ____ is located upstream and____downstream of the coding strand .
Promoter
Terminator
There are additional regulatory that may be present further upstream and downstream to the _____.
Promoter
A ___is defined as the functional unit of inheritance .
Gene
The DNA sequence coding for ____or ____also define a gene .
tRNA
rRNA
By defining a cistron as a segment of DNA coding for polypeptide , the structural gene in a transcription unit could be said as ___ or ____.
Monocistronic
Polycistronic
Monocistronic gene is found mostly in __and polycistronic gene is found mostly in _____ .
Eukaryotes
Prokaryotes or bacteria
In eukaryotes ,the monocistronic structural genes have ____ coding sequence - the genes in EUKARYOTES are ______ .
Interrupted
Split
The coding sequences or EXPRESSED sequences are defined as _____.
Exons
Exons are said to be those sequences that appear in _____.
Mature or processed RNA
The exons are interrupted by _____.
Introns
___do not appear in mature or processed RNA .
Introns
The ___arrangement further complicates the definition of a gene in terms of a DNA segment .
Split gene
Inheritance of a char are also affected by _____and ____sequnces of a structural gene .
Promoter
Regulatory
Sometimes the regulatory sequnces are loosely defined as ____ though they do not code for any RNA or proteins .
Regulatory genes
In bacteria , there are _major types of RNA .
3
M-RNA
T-RNA
R-RNA
All the 3 RNAs are needed to synthesise a ___ in a cell .
Protein
The ___provides the template , __brings amino acids and reads the genetic code , ___ play structural and catalaytic role during translation .
mRNA
tRNA
rRNA