Molecular Flashcards
How many times does DNA loop around histone octamer to form a nucleosome
2
What charge do phosphate groups give DNA
Negative
What gives a positive charge to histone
Lysine and arginine
Which phase does DNA and histone synthesis occur in?
S phase
Which phase does Cell Division occur in?
M phase
In what way is Mitochondria’s own DNA different than ours?
It is circular and does not have histones
What is heterochromatin?
Condensed DNA, appearing dark on EM
Is Heterochromatin transcriptionally inactive?
Yes
What are Barr Bodies?
Inactive X chromosomes may be visible on the periphery of nucleus
What’s DNA methylation involved in?
Genetic imprinting, X chromosome inactivation, aging, carcinogenesis
What is DNA methylation?
Methyl group is added to cytosine,
In CG islands
What does DNA methylation do?
It prevents transcription
What does histone acetylation do?
Histone acetylation makes DNA active
What’s nucleoside ?
Base plus (deoxyribose sugar) Nucleoside= S
What’s Nucleotide?
Base plus (deoxyribose sugar) plus phosphate, linked by 3’-5’ phosphodiester bond. NucleoTide= PhosphaTe
What does the 5’ end of incoming nucleotide bear?
Triphosphate hence energy source
Triphosphate bond is the target of?
3’ OH attack
Purines are?
PURe As Gold—> Adenine, Guanine, 2 rings
Pyriminides are?
CUT the PY——> cytosine, uracil, thymine. 1 ring
Thymine has a?
Methyl group
C-G bonds have how many h bonds?
Three
Higher the C-G content, higher the?
Melting temp of DNA, C-G bonds___> Crazy Glue bonds
Deamination of cytosine forms ?
Uracil
Deamination of adenine forms?
Hypoxanthine
Deamination of guanine forms?
Xanthine
Deamination of 5-methlycytosine forms?
Thymine
Methylation of uracil forms?
Thymine
Uracil is found in?
RNA
Thymine is found in?
DNA
Amino acids necessary for purine synthesis?
Cats PUrr until they CAG—-> Glycine, Aspartate, Glutamine
What does unmethylated CG do?
Stimulates immune response
What does bacterial methylation?
Bacteria methylates cytosine and adenine
What does bacterial methylation do?
It protects bacteria from viruses, phages
Non methylated DNA destroyed by endo nucleases. Restriction modification systems
What does histone methylation do?
It makes DNA mute
What is drug induced lupus?
Fever, joint pains, rash after starting drug
What are the lab findings in drug induced lupus
Anti histone antibodies in contrast to
Anti dsDNA in classic lupus
What are the classic drugs for Drug induced Lupus?
Hydralazine, Procainamide, Isoniazid
HPI
What is adenosine deaminase deficiency?
Degradation of adenosine into inosine
dATP increases
Lymphotoxicity
One of the major causes of SCID
What is Lesch Nehan syndrome?
Absent HGPRT
Hence increased uric production
and increased de novo synthesis (prpp, imp increases)
What is the classic presentation of Lesch nyhan
H hyper uricemia (orange sand) G gout Pissed off (aggression, self mutilation) Retardation DysTonia
MALE
What is orotic aciduria?
Defective UMP synthase, increased orotic acid in urine
What are the symptoms of orotic aciduria?
Megaloblastic anemia, you give folate and still it doesn’t get better
What is treatment of orotic aciduria?
You give uridine, bypasses UMP synthase
What are the levels of RBC, MCV, homocysteine and MMA in folate, B12 def?
RBC increases both
MCV increases both
Homocysteine increases both
MMA, only increased in B12
What is the origin of replication?
It is the AT rich pair sequence (found in promotors as well)
Replication fork is the _________ along dna template where _____________
It is the y shaped region
where lagging and leading strands are synthesised
What is the role of helicase?
Unwinds dna template at replication fork
What are single stranded binding proteins?
Prevents strands from re annealing
Stabilisation
Dna topo isomerases can create __________ stranded breaks to ______________
single or double
to add or remove super coils
Which drug inhibits TOP 1 in eukaryote?
Irinotecan/topotecan
Which drug inhibits TOP11 in eukaryote?
Etoposide/teniposide
Which drug inhibits TOP11 and TOP1V in prokaryotes?
Floroquinolones
Primase is enzyme which makes _________ on which ________ can initate replication
Rna primer
Dna polymerase 111
What is the role of DNA polymerase 111?
Only in prokaryotes
Has 5’-3’ synthesising activity and 3’-5’ exonuclease activity
How do drugs block replication?
They have modified 3’OH, thereby preventing addition of next nucleotide (chain termination)
What is the role of DNA polymerase 1?
In prokaryotes only
Remove rna primer, replace it w dna
And have 5’-3’ exo nuclease activity
DNA polymerase delta (in Euko)
What is dna ligase?
Joins Okazaki fragments
What are telomerases?
Eukaryotes only
TTAGGG+AACC 3’ is extended
CCUUGG (has rna template)
DNA polymerase
Fills in remaining gaps on lagging strand
What is the use of telomerases?
Avoids loss of genes after every duplication
What cells have high levels of telomerase ?
Hematopoietic cells, epidermis, hair follicles, intestinal mucosa
What does it mean to have genetic code be unambiguous?
One codon is specific for one amino acid
What does it mean to have genetic code by degenerate/redundant?
One amino acid may be specific for several codons
What is the Wobble hypothesis mean?
It means that the codons may differ in third base, and may code for the same tRNA/amino acid. Specific base pairing is usually required only in the first 2 nucleotide positions of mrna
What are the exceptions of Wobble phenomenon?
Methionine (AUG)
Tryptophan (UGG)
Encoded by one codon