Module 4 - Genetics (Passing on Information) Flashcards
Definition of Genetics
study of inherited variation
Genome = entire genetic complement of an organism (that is inherited) Genes = functional units within a genome which is made up of nucleic acids (was originally all RNA but evolved to DNA as it is more stable for storage) (genes may or may not code for proteins)
Nuclear and extranuclear genomes = DNA found in nucleus and extranuclear DNA found in mitochondria and chloroplasts
Epigenetic states = how information in a genome is expressed
Clonal Inheritance
where genetic material is copied (DNA replication) where copied material is accurately partitioned into daughter cells (horizontal transmission)
(horizontal transmission = movement of genetic information between unicellular or multicellular organisms compared to transmission of DNA from parent to offspring (vertical transmission)
Cell Cycle (eukaryotes)
Interphase
- G1 = cell growth and prepares for DNA replication (organelle production)
- S phase = DNA is replicated and synthesized
- G2 phase = cell finishes replication and prepares for division
Metaphase (mitosis)
Checkpoints at each stage in interphase to ensure accuracy/precision of replication
Checkpoint at G1 = there are growth signals to ensure cell has grown enough and DNA is not damaged
Checkpoint at G2 = where cell must be large enough for cell division and DNA was fully replicated
Checkpoint at metaphase = to ensure chromosome-spindle assembly
Chromosomes
Homologous chromosomes = maternal or paternal pair of chromosomes (share structural features, e.g. size, banding patterns, centromere positions, same genes at same loci BUT NOT NECESSARILY SAME ALLELES)
Chromatid = single strand of chromosome (1 DNA molecule in 1 chromatid) Sister chromatids (homologous chromatids) = pair of chromosomes that are identical (either paternal or maternal)
Mitosis
During interphase, DNA is loosely packed (two copies of it)
PROPHASE - DNA is tight coiled (supercoiled) to form chromosomes and spindle fibres (microtubules made from tubulin) form
spindle fibres attach to centrosomes at pole of cells + centromere of chromosomes
METAPHASE - Microtubules are attached to centromere of chromosomes where they align in the middle of cell
1 identical sister chromatid facing each pole
ANAPHASE - centromeres break apart due to spindles pulling them apart (sister chromatids break apart)
TELOPHASE - nuclear envelop reforms and spindle fibres break down, chromosomes uncoil (1 copy)
Cytokinesis - after nucleus divides, rest of cell divides (division of cytoplasm and organelles)
Genomes and Ploidy
Genomes are all not the same size (not dependent on organisms size)
PLOIDY - number of copies of genome (n)
Haploid - single copy of genome (n)
Diploid - 2n
Triploid - 3n
Ploidy is not static, it can change depending on organism’s life cycle, somatic cells/gametes or evolution
Life cycle: Mold (fungus) is haploid for most of its life but are diploid during zygote development
Fern - it is haploid during germination that form gametes, when gametes join together they form mature fern (diploid)
Somatic cells (every cell type except reproductive cells) vs gametes: when eukaryotes are mostly diploid (2n) but form haploid cells (gametes) but fuse together to form diploid cells
Gametes cannot replicate themselves, only merge to form zygotes (2n, somatic cells)
Zygotes, somatic cells can replicate themselves
Evolution: wheat in ploidy is changed over time
originally, two species (wheat and wild grass) shared a chromatid which was then replicated forming a hybrid plant
Diploid wheat became hybrid which became tetraploid after replication
Tetraploid wheat mated with another species of wild grass having 3 chromatids of each species
After replication, the wheat became hexaploid (mitotic disjunction)
Chromosome infos
Genetic material can be circular (prokaryotes) or linear
Substructures: centromere, telomere, origins of replication
Number of chromosomes ranges in different species (does not depend on genome size)
Genetic material is also found outside of nucleus in organelles (part of genome but exists outside)
PLASMIDS are extra individual genetic material (usually genetic advantages, e.g. antibiotic resistance)
Genes and Alleles
Genes are present in almost all cells besides RBC (RBC have no genetic material as their sole function is transportation) (RBC do have information - mRNA - from original genetic material in order for proteins to function)
Genes in all cells are almost always the same besides in B cells (antibody producing cells)
-the produce specific antibodies by rearranging genes (different arrangement makes specific antibody to match antigen)
ALLELE - a copy of a gene that codes for different variations of a trait, alleles only differ by 1 or a few bases
-diploids have two copies of every gene, thus two alleles (can be identical or different)
Wild type allele - most common allele (mutant allele is other type)
Variance in genes are by:
-location on gene (loci), different possibilities/arrangement of bases, number of chromosome copies, different functions (due to variance)
(rRNA genes are duplicated in our body as we need many of them)
Meiosis (vertical transmission)
-allows for genetic transmission and random assortment
(ploidy has to change during meiosis, as if it remained the same, number of chromosomes will always double)
Chromosomes halves in number during meiosis (n, 4 gametes)
PROPHASE 1 - supercoiling of chromosomes, replicated chromosomes pair up in their homologous pairs to form a bivalent (pair of mixed chromosomes; exchange of material) where crossing over occurs, spindle network of microtubules form and nuclear envelop breaks down
METAPHASE 1 - bivalents line up at the equator, centromere are attached to microtubules (where random assortment occurs)
ANAPHASE 1 - microtubules contract to pull homologous pairs break apart to opposite poles (centromeres DO NOT BREAK) (pair of chromosome in each cell)
TELOPHASE 1 - same as mitosis
PROPHASE 2 - same as mitosis
METAPHASE 2 - chromosomes line up at equator and centromeres are attached to microtubules
ANAPHASE 2 - centromeres break and chromatids pull apart in opposites poles
TELOPHASE 2 - four haploid cells are formed, spindle fibre network breaks down, nuclear envelope reforms and chromosomes uncoil
Genetic exchange results in new combinations of alleles (recombination = crossing over between chromosomes, occurs during prophase 1 of meiosis)
CHIASMA - when crossing over occurs between two non-sister chromatids forming a recombinant
Errors in division of chromosomes
Non disjunction = where a pair of chromosomes do not split up, causing one gamete to have an extra set of chromosomes (3n, triploid) and one gamete having one less set of chromosomes
Aneuploidy - having abnormal number of chromosomes in a cell (45 or 47 chromosomes, instead of 46)
Trisomy of chromosome 21 = down syndrome (due to incorrect division in meiosis 1)
Autosomes and Sex Chromosomes
Autosomes = set of chromosomes that are identical to each other (any set of chromosomes beside sex chromosome)
Sex Chromosomes = determines sex of organism
(sex chromosomes at meiosis act like a pair of homologous chromosomes; gender depends on father’s allele whether it is X or Y chromosome as female’s is always X)
Homogametic = autosomes, same sex chromosomes (e.g. female human, grasshopper, drosphilia)
Heterogametic = different sex chromosomes (e.g. male human, drosphilia, female birds) (chromosomes that have different morphology thus having two different gametes)
Sex Determination
Sex Determination can be:
-Environmentally influenced
Sex in reptiles are determined by incubation of eggs
(lizards/alligators, higher temperature = male
turtles, higher temperature = female)
-Genetic
-Ploidy
Females (workers and queen) are diploid (fertilized eggs), males (drones) are haploid (unfertilised)
-Ratio of sex chromosomes to autosomes
Drosphilia (XY system): female = X/A = 1 ratio, male = X/A = 0.5 ratio
Grasshoppers (XO system): female = XX, male = XO
-Sex determining chromosomes/gene
Mammals = XY system, Y determines maleness
Birds = ZW system, male = ZZ, female = ZW
Sex Determination - Non disjunction of sex chromosomes
TDF gene mutation where it appears on X chromosome instead of Y (X determines maleness)
Non disjunctions at meiosis can occur in syndromes
XO = turner syndrome
XXY = klinefelter syndrome
In drosphilia: ratio determines fertility as well
males = XO (sterile)
XY = fertile
Genes on a chromosome
Genes on a chromosome can be transcribed into forming a polypeptide (genes can be facing different directions even if on the same strand)
Homozygous = the two copies of alleles of a gene are the same
Heterozygous = the two copies of alleles of a gene are different
Hemizygous = only one copy of a chromosome (human male = 1 copy of X chromosome, 1 copy of Y)
Variations that are inherited
Phenotypic variations can be
Naturally occuring
Laboratory induced
Phenotypic variations can be
Monogenic - controlled by one gene
Polygenic - controlled by two or more genes
Phenotypic variations can be affected by the environment
Genotypes and Phenotypes
Genotype - description of genetic composition of an organism
-can derive from 1 individual (mitotic) or from 2 parents (meiotic)
Phenotype - description of morphological, physical, behavioural properties of an organism due to its specific genotype and interaction with the environment
Mendel’s First Law
Gregor Mendel - indentified the principles of inheritance (experimented with pea plants; Pisum sativum)
First law = ALLELES WILL ALWAYS SEGREGATE AWAY FROM EACH OTHER TO FORM GAMETES (individual segregation)
Experiment with pea plants (monohybrid cross; Dominant and recessive)
1 parent = round peas
1 parent = shrivelled peas
Both parents are PURE BREEDING (homozygous; both alleles at the locus controlling the characteristic are the same)
F1 (flial 1) = offspring were all round peas and heterozygous
F2 = 1:2:1 ratio of genotype
phenotypic ratio = 3:1
2 homozygous and 2 heterozygous offspring
Heterozygous pea plants demonstrated round phenotype (dominant)
To get the frequency of an allele pair:
Multiple the frequency of each gamete with each other