Module 04: Enzymes (Stoker) Flashcards
They act as a catalyst for biochemical reactions. They can be denatured and activity is dramatically affected by alterations in pH, temperature and other protein denaturants
Globular Proteins (Enzymes)
These are exceptions and ribonucleic acids with catalytic activity.
Ribozymes
Enzymes are not consumed in the reactions; they are ______________.
Regenerated
What is the effect of enzymes on equilibrium constant (Keq) along with retention factor (Rf) and Rb values?
It has no effect on Keq, increase both Rf and Rb reactions at same rate. It can increase rate a 10^3 to 10^6 fold
What are the general characteristics of enzymes?
(1) Regulation (allosteric enzymes) activities of allosteric enzymes can be controlled or modulated by allosteric effectors
(2) Location: found in specific sites or organelles within the cell. Reason why enzymes are used as clinical markers for certain diseases.
What are the two (2) types of enzymes?
(1) Simple Enzymes
(2) Conjugated Enzymes
These are composed only of protein (amino acid chains).
Simple Enzyme
These types of enzymes has a non-protein part in addition to a protein part.
Conjugated Enzyme
This is the protein part of a conjugated enzyme (inactive).
Apoprotein
This is a nonprotein part of a conjugated enzyme.
Cofactor
These are constituted of an apoenzyme and co-factor. And is known to be the biochemically active conjugated enzyme
Holoenzyme (cofactor)
This is important for the chemically inactive enzymes and are small organic molecules or Inorganic ions
Cofactors
Cofactors are also known as ___________ or __________.
Coenzymes or substrates
Coenzymes/cosubstrates are derived from “__________.”
dietary vitamins
What are the typical metal ion cofactors?
Zn2+, Mg2+, Mn2+, and Fe2
What are the typical non metallic ion cofactors?
Cl-
Inorganic ion cofactors derived from “___________.”
dietary minerals
The nomenclature of an enzyme is based on what factors?
(1) Type of reaction catalyzed
(2) Identity of the substrate
This is the is the reactant in an enzyme-catalyzed reaction. This is the substance upon which the enzyme “acts.”
Substrate
What are the three important factors of the naming process?
(1) Suffix -ase identifies it as an enzymes. Exception: The suffix -in is still found in the names of some digestive enzymes, E.g. trypsin, chymotrypsin, and pepsin
(2) Type of reaction catalyzed by an enzyme is often used as a prefix
(3) Identity of substrate is often used in addition to the type of reaction
What are the six major classes (classification) of enzymes?
(1) Oxidoreductase
(2) Transferase
(3) Hydrolase
(4) Lyase
(5) Isomerase
(6) Ligase
What type of reaction does Oxidoreductase catalyze?
Oxidation-reduction
What type of reaction does Transferase catalyze?
Functional group transfer reactions
What type of reaction does Hydrolase catalyze?
Hydrolysis reaction
What type of reaction does Lyase catalyze?
Reactions involving the addition to a double bond or removal of groups forming a double bond
What type of reaction does Isomerase catalyze?
Isomerization reactions
What type of reaction does Ligase catalyze?
Reactions involving bond formation coupled with ATP hydrolysis
This is an enzyme catalyzes an redox reaction:
Oxidoreductase
What does Oxidoreductase require?
coenzyme that is either oxidized or reduced, e.g. NAD+, FAD, FMN
This pertains to the decrease in valence along with the gain of H or loss of O. This is undergone by oxidizing agent.
Reduction
This pertains to the increase in valence along with the loss of H or the gain of O. This is undergone by reducing agent.
Oxidation
This undergoes reduction, gain of e- or gain of H
Oxidizing Agent
This undergoes oxidation, loses e-/donor of H
Reducing Agent
This is an enzyme that catalyzes the transfer of a functional group from one molecule to another
transferase
These catalyze transfer of an amino group to a substrate, catalyze transamination reaction
Transaminases
This catalyze transfer of a phosphate group from adenosine triphosphate (ATP) to a substrate
Kinase
This is a reaction of an amino acid and a-keto acid to form a new a-keto acid and a new amino acid
Transamination
This is an enzyme that catalyzes a hydrolysis reaction
hydrolase
What does hydrolase involve?
The reaction involves addition of a water molecule to a bond to cause bond breakage
What are the three integral hydrolysis reactions in the process of digestion?
(1) Carbohydrase
(2) Proteases
(3) Lipases
These hydrolyze glyosidic bonds in oligo- and polysaccharides
Carbohydrase
These effect the breaking of peptide linkages in proteins,
Proteases
These effect the breaking of ester linkages in triacyclglycerols (TAGs) or fats.
Lipases
This is an enzyme that catalyzes the addition of a group to a double bond or the removal of a group to form a double bond in a manner that does not involve hydrolysis or oxidation
lyase
This effects the removal of the components of water forming a double bond
Dehydratase
These effects the addition of the components of water to a double bonds
Hydratase
These catalyze synthesis (joining of molecules) without use of ATP
Synthase
This is an enzyme that catalyzes the isomerization (rearrangement of atoms) reactions.
Isomerase
What does an isomerase involve?
Interconversion between D and L amino acid, between an aldose and a ketose or internal rearrangement.
This is an enzyme that catalyzes the joining of two molecules involving ATP hydrolysis as a source of energy
Ligase
What does a ligase require?
ATP hydrolysis is required because such reactions are energetically unfavorable (Require the simultaneous input of energy obtained by a hydrolysis of ATP to ADP.)
This is the relatively small part of an enzyme’s structure that is actually involved in catalysis:
Active Site
What are some of the characteristics of the active site?
(1) Place where substrate binds to enzyme
(2) Formed by groups from different parts of protein, brought by folding and bending of the protein.
(3) Usually a “crevice like” location in the enzyme
True or false: Some enzymes have more than one active site.
True
What is the formula for the Enzyme Substrate Complex?
S + E ————–> <—————–ES ——–> P + E
How do enzymes increase the rate?
Enzymes increase the rate by providing alternate route with lower energy of activation.
This is the intermediate reaction species formed when substrate binds with the active site
Enzyme Substrate Complex
What are the two models for Substrate Binding to Enzyme?
(1) Lock-and-Key Model
(2) Induced Fit Model
In this model of substrate binding, enzyme has a pre-determined shape for the active site. In this, only substrate of specific shape can bind with active site
Lock-and-Key Model
In this model of substrate binding, substrate contact with enzyme will change the shape of the active site. This allows small change in space to accommodate substrate
Induced Fit Model
What are the Forces That Determine Substrate Binding (non covalent interactions?
(1) H-bonding
(2) Hydrophobic interactions
(3) Electrostatic interactions
What kind of specificity does the Lock & key model explain?
absolute specificity
What kind of specificity does the Induced fit model explain?
broad specificity
This is the ability to discriminate between 2 competing substrate
Enzyme Specificity
This acts on only one substrate. In this, an enzyme will catalyze a particular reaction for only one substrate
Absolute Specificity
This is most restrictive of all specificities (not common)
Absolute Specificity
In this, an enzyme acts only on a particular stereoisomer. Moreover, it can distinguish between stereoisomers. For example, an L-Amino-acid oxidase - catalyzes reactions of L-amino acids but not of D-amino acids.
Stereochemical Specificity
In stereochemical specificity, this is inherent in an active site.
Chirality
This acts on structurally similar compounds that have the same functional groups.
Group Specificity or broad
This acts on 2 or more substrate containing a particular type of bond irrespective of the structural features in the vicinity of the bond
Linkage Specificity
This is considered most general of enzyme specificities
Linkage Specificity
What is the relationship between temperature and the rate of activation?
Higher temperature results in higher kinetic energy which causes an increase in number of reactant collisions, therefore there is higher activity.
This is the temperature at which the rate of enzyme catalyzed reaction is maximum
Optimum temperature
Optimum temperature for human enzymes is ______________.
37ºC (body temperature)
Increased temperature (high fever) leads to: “_________”
decreased enzyme activity
Drastic changes in pH can result in “_________________”
denaturation of proteins
pH at which enzyme has maximum activity
Optimum ph