Mitochondria and peroxisomes Flashcards

1
Q

Name 3 diseases mitochondria can be linked to

A

Cancer, cardiovascular disease, dementia

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2
Q

What does the endosymbiotic theory suggest?

A

All existing mitochondria can be traced back to one original prokaryotic cell. The prokaryotic cell was then engulfed by a primitive form of a eukaryotic cell. They formed a symbiotic relationship. The prokaryote divided inside its host, producing daughter cells for when the host cell divided.

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3
Q

Describe and explain the evidence for endosymbiotic theory

A

From phylogenetics

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4
Q

Name the membrane and membrane related structures of the mitochondria

A

Double membrane - Inner, outer
Between - Inter membrane space
Within inner membrane - Mitochondrial Matrix, where metabolic reactions occur

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5
Q

Where are the protein complexes responsible for oxidative phosphorylation

A

Inner membrane

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6
Q

What is the evidence that mitochondria exists from a prokaryotic ancestor

A

Presence of two membranes, presence of small circular genome (own DNA)

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7
Q

Name the other parts of the architecture of the mitochondria

A

ATP synthase particles
Cristae
Ribosome
Granules

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8
Q

How are mitochondria organised in skin fibroblast cells?

A

Interconnected, forming dynamic networks, mitochondria constantly moving in cell.

Individual mitochondria can separate, divide and fuse (fission/fusion)

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9
Q

How are mitochondria organised in cardiac cells

A

Highly abundant in distinct zones. Subcellular populations perform zonal specific functions

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10
Q

How do mitochondria move

A

Requires motor proteins dynein and kinesin, mitochondria must bind to them

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11
Q

What two adapter proteins does mitochondria have on its surface and what do they do

A

Milton and Miro - Bind to kinesin and dynein

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12
Q

Why is transport of mitochondria in neuronal axons for example important

A

Required for neuronal signalling and function in synapses

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13
Q

How are new mitochondria made

A

Grow the mass of existing mitochondria, which then undergo fission to produce new mitochondria.

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14
Q

What happens when as a result of time macromolecules such as DNA in mitochondria are damaged

A

Mitochondria undergo mitophagy to restore overall cellular health.

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15
Q

Name some functions briefly of the mitochondria

A
  1. ATP synthesis (oxidative phosphorylation)
  2. Central hubs of metabolism, not just energy metabolism (Anabolic synthesis of nucleotides for example, used in DNA replication)
  3. As a result of 2, mitochondria can be used in cancer therapy
  4. Calcium homeostasis for muscle contraction
  5. Production of amino acids e.g. glutamate, neurotransmitters.
    6.Apoptosis - Mechanism of cell death/suicide
  6. Immune respones - protein receptors detect viral RNA molecules, located on outer membrane of mitochondria. Activates innate immune response.
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16
Q

Name some functions briefly of the mitochondria

A
  1. ATP synthesis (oxidative phosphorylation)
  2. Central hubs of metabolism, not just energy metabolism (Anabolic synthesis of nucleotides for example, used in DNA replication)
  3. As a result of 2, mitochondria can be used in cancer therapy
  4. Calcium homeostasis for muscle contraction
  5. Production of amino acids e.g. glutamate, neurotransmitters.
    6.Apoptosis - Mechanism of cell death/suicide
  6. Immune response - protein receptors detect viral RNA molecules, located on outer membrane of mitochondria. Activates innate immune response.
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17
Q

What is the citric acid cycle

A

Final common pathway for oxidation of fuel molecules (carbohydrates, fatty acids and amino acids)

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18
Q

What happens to acetyl-coenzyme A in the citric acid cycle

A

Completely oxidised to carbon dioxide

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19
Q

Name the important functions of the citric acid cycle

A

Produce electron donors - NADH and FADH2

Which are then used to synthesise ATP in oxidative phosphorylation

(Catabolic state - breaking into smaller molecules)

  1. To provide biosynthetic precursors for the biosynthesis of fatty and amino acids (Anabolic state - synthesising bigger molecules)
20
Q

Describe first reaction of the citric acid cycle

A

Acetyl-CoA (2C) combines with oxaloacetate (4C) to make citrate (6C), catalysed by citrate synthase

21
Q

What happens to citrate after it is formed in the citric cycle

A

Citrate isomerised into first cis-aconitase then isocitrate, catalysed by aconitase

22
Q

What happens to isocitrate in the citric cycle

A

Isocitrate (6C) oxidised into alpha-ketoglutarate (5C) catalysed by isocitrate dehydrogenase

One molecule of NAD reduced to NADH, and one molecule of CO2 produced.

23
Q

What happens to alpha-ketoglutarate

A

Converted into succinyl-CoA (4C) by alpha ketoglutarate dehydrogenase. NAD reduced to NADH, CO2 produced

24
Q

What happens to succinyl-coenzymeA

A

Converted to succinate by succinyl coenzyme A synthetase, GTP molecule produced

25
What happens to succinate
Converted to fumarate by succinate dehydrogenase, a molecule of FADH2 is produced
26
Where is the succinate dehydrogenase found, why is this different
Inner membrane of mitochondria. The other citric acid cycle enzymes are soluble enzymes in the mitochondrial matrix
27
What happens to fumarate
Converted to malate by catalyst fumarase
28
What happens to malate
Converted to oxaloacetate (4C) through malate dehydrogenase, and 1 NADH formed.
29
What are the overall products of the citric cycle
3xNADH 1xFADH2 2xCO2 1xGTP
30
What are the NADH and FADH2 used in
Electron transport chain to produce ATP.
31
What two steps make up oxidative phosphorylation
1. Generation of a proton motive force (ETC/Respiratory chain) 2. Chemiosmosis (ATP synthase)
32
Which membrane embedded protein complexes are involved in oxidative phosphorylation
NADH dehydrogenase Succinate dehydrogenase Cytochrome-BT1 complex Cytochrome-C oxidase ATP synthase (number I-V) Proteins 1-4 are involved in transfer of electrons and generation of motive force. They are part of the ETC. Respiratory chain complexes.
33
What do ubiquinone and cytochrome C do in oxidative phosphorylation
Small electron carriers
34
How is NADH used in oxidative phosphorylation
Electrons from NADH enter at complex I. NADH -> NADP+ Complex I becomes charged, protons transported from matrix side to inter membrane space. A transmembrane potential is generated, the intermembrane space becomes positive to the matrix's negative charge.
35
How is FADH2 used in oxidative phosphorylation
Enters ETC at complex II. FADH2 -> FAD Complex II does not pump protons, does not contribute to motive force.
36
What happens to electrons after they enter complexes I and II
Electrons transported to ubiquinone, then to III, then to IV through cytochrome C, both III and IV pump protons and contribute to motive force.
37
What happens in the last step of the electron transport chain
At complex IV, the electron is donated to the terminal acceptor oxygen, which is then reduced to water.
38
What happens aftre the electrochemical gradient is formed between the matrix and the intermembrane space (protons/electrons)
Protons flow back into the matrix through complex V, harnessing the energy from proton flow to synthesise ATP through the phosphorylation of ADP with Pi.
39
What is the sum of ATP generated from NADH and FADH2
2.5 molecules of ATP from NADH 1.5 from FADH2
40
Describe the structure of peroxisomes
Single membrane bilayer Do not have own DNA
41
State main functions of the peroxisome
Fatty acids broken down inside peroxisomes through B-oxidation. Breaks down even long chain fatty acids. Detoxification of the hydrogen peroxide - Reactive oxygen species which can damage macromolecules e.g. DNA, protein, which could cause cellular dysfunction and contribute to ageing.
42
State some other functions of peroxisomes
Metabolism of bile acids, important in digestion and synthesis of cholesterol
43
What is the enzyme that detoxifies hydrogen peroxide called
Catalase
44
How do peroxisomes replicate
Peroxisomal fission
45
State proteins involved in peroxisomal and mitochondrial fission
DNM1L, FIS1
46
State some shared features of mitochondria and peroxisomes
Important in cellular metabolism (fatty acids) Can divide Proteins required for division on outside of both organelles Anti-viral signalling (MAVs complex present on both outer membranes)
47
Why are mitochondrial diseases complex
Some are caused by mutations in mitochondrial DNA, which affect oxidative phosphorylation.