Microbiology - Bacteria Flashcards
Acinetobacter baumannii
Gram - coccobaillus
Non-lactose fermenting (non-pink colonies on MacConkey agar)
Can cause nosocomial pneumonia, bacteremia, wound infections, esp with war, UTIs
Actinomyces israelii
Gram + rods in filamentous chains
Obligate anaerobe
Molar colonies, yellow sulfur granules → stains purple with H&E (see picture)
a/w poor dentition, lumpy jaw (oral/facial abscesses), pulmonary actinomycosis a/w aspiration
“Israel has yellow sand”
Tx: penicillin
Bacillus anthracis
Gram + boxcar rods in chains
Spore-forming
Polypeptide capsule of D-glutamate
EF (edema factor) mimics adenylate cyclase → ↑ cAMP
LF (A toxins) PA (B toxin)
Cutaneous: boil-like lesions with black eschar
Pulmonary: inhales spores → flu-like symptoms, fever, pulmonary hemorrhage, mediastinitis → widened mediastinum, shock
Gastrointestional
Treat with ciprofloxacin
Bacillus cereus
Gram + rod
Spore-forming
Beta hemolytic
Causes food-borne illness, endopthalmitis (post-surgical, hematogenous)
Emetic type from preformed cereulide toxin (esp. from reheated rice)
Diarrheal type
Bartonella bacilliformis
Gram - rod Sand fly-borne Limited to Andes in Peru Causes Carrion’s disease Phase 1: Oroya fever with hemolytic anemia Phase 2: verruga peruana
Bartonella henselae
Gram - rod
Flea-born
Cat reservoir
Causes cat scratch fever or bacillary angiomatosis (biopsy reveals neutrophilic inflammation)
Bartonella quintana
Gram - rod Body louse-bore Causes trench fever, bacillary angiomatosis
Best media to grow Neisseria?
Thayer-Martin or VPN media
Vancomycin inhibits gram +
Polymyxin inhibits non-Neisseria gram -
Nystatin inhibits fungi
Bordetella pertussis
Gram - coccobacilli
Encapsulated
Requires fatty acid for culture (Bordet-Gengou agar or Regan Lowe charcoal with horse blood) → “Bordet for Bordetella”
Pertussis toxin → overactivation of adenylate cyclase increases cAMP by disabling Gi → impaired phagocytosis
Causes pertussis (whooping cough)
DTaP vaccine for children, Tdap for adults
Borrelia bergdoferi
Lyme disease
Deer tick (Ixodes)
Mice are natural reservoir
Spirochete Stage 1: erythema migrans (expanding bulls-eye rash), fever, lymphadenitis
Stage 2: annular skin lesions, meningoencephalitis, Bell’s palsy, arthritis, carditis
Stage 3: arthritis, neuropathy, 3rd degree heart block
Treat with doxycycline
Borrelia hermsii
Soft-shelled tick Spirochete Endemic relapsing fever
Borrelia recurrentis
Spirochete
Transmitted by body louse
Epidemic relapsing fever
Brucella
Gram - coccoid rod
Facultative intracellular, lives in RES
Consumption of infected milk or milk products, exposure to cattle, pigs
Causes undulant fever/brucellosis
Campylobacter jejuni
Gram - rod (gull-shaped, comma-shaped)
Oxidase +
Grows in 42°C (“Campylobacter likes the campfire”)
Transmitted from puppies, livestock, ingestion of undercooked meat
Intestinal invasion
Causes inflammatory diarrhea, especially in children
Complications include Guillain-Barre syndrome and Reiter’s syndrome (reactive arthritis)
Capnocytophagia canimorsus
Gram - rod Dog > cat bite Resistant to TMP/SMX, aminoglycosides
Causes of VDRL false positives:
Viruses (mono/EBV, hepatitis)
Drugs
Rheumatic fever
Lupus and leprosy
Chlamydia pneumonia
Atypical pneumonia in young adults
Intracellular
Lacks muramic acid in cell wall
Tx: azithromycin or doxycycline
Chlamydia trachomatis
Gram - coccus or rod
Obligate intracellular pathogen (elementary bodies [infective part] and reticulate bodies)
Serovars A, B, C cause infectious keratitis (trachoma)
Serovars D-K cause STIs: cervicitis, urethritis with a clear discharge, reactive arthritis, PID, neonatal conjunctivitis (unilateral), neonatal pneumonia
Serovars L1-L3 cause lymphogranuloma venereum –> tender regional lymphadenopathy that ulcerates to form buboes
Diagnose with nucleic acid amplification test
Treat with azithromycin, doxycycline, tetracycline
Chlamydophila psittaci
Causes Psittacosis
Transmitted from parrots/birds
Clostridium botulinum
Gram + rod
Spore-forming
Obligate anaerobe
Botulinum toxin (pre-formed, heat labile) is a protease that cleaves SNARE proteins and prevents release of acetylcholine at neuromuscular junction
Flaccid paralysis, floppy baby syndrome (honey)
Clostridium difficile
Gram + rod
Obligate anaerobe
Spores resistant to heat, alcohol-based antiseptics
Toxin A (enterotoxin) binds to brush border of gut and toxin B (cytotoxin) depolymerizes actin → psueomembranous colitis → diarrhea → toxic megacolon
Risk factor include older age, Caucasian female, recent hospitalization, recent antibiotic use (esp. clindamycin, ampicillin)
Tx: metronidazole, oral vancomycin, fidaxomin, fecal transplant
Clostridium perfringens
Gram + rod
Obligate anaerobe
Spore-forming (resistant to heat and alcohol-based antiseptics)
Alpha-toxin/lecithinase/phospholipid C splits phospholipids, hemolyzes RBCs
Myonecrosis (gas gangrene), food poisoning
Clostridium tetani
Gram + rod (tennis racket)
Spore-forming
Obligate anaerobe
Tetanospasmin toxin is a protease that cleaves SNARE proteins → prevents release of GABA and glycine → decrease in inhibitory neurotransmitters → increased activation of motor nerves → spastic paralysis, risus sardonicus, trismus (lock jaw)
Toxin travels from wound → motor neuron axons → spinal cord
Corynebacterium diphtheriae
Gram + rod arranged in “Chinese letter” clumps
Catalase +
Contains cytoplasmic granules that stain with aniline dyes like methylene blue
Grow on Tellurite agar or Loffler medium
Causative agent of diphtheria (pseudomembrane), myocarditis → arrhythmias, lymphadenopathy
The toxin can be cleaved into a fragment that catalyzes the NAD+ -dependent ADP-ribosylation of elongation factor 2, thereby inhibiting protein synthesis
Treat with horse antitoxin
Prevent with DTaP vaccine (toxoid)
Coxiella burnetii
Gram - rod
Obligate intracellular
Spore-forming
Aerosol
Contact with goats, sheep, or cattle
Q fever, atypical pneumonia
Eikenella corrodens
Gram - rod
Anaerobic
Human bite wounds
Smells like bleach
Enteroaggregative E. coli (EAEC)
Gram - rod
Oxidase -
Glucose fermenter
Lactose fermenter → colonies turn pink on MacConkey agar
Dauses diarrhea in infants and adults
Enterobacteria
Gram - rod
Lactose fermenter (fast)
a/w endocarditis with abdominal or pelvic surgery
Enterococcus faecalis/faecium
Gram + cocci
Catalse -
Gamma/Non-hemolytic → Group D
Salt and bile-tolerant
Causes complicated UTI, biliary tract infections, subacute endocarditis following GI/GU procedures
Enterohemorrhagic E. coli (EHEC)/Shiga Toxin-producing E. coli (STEC)
Gram - rod
Oxidase -
Glucose fermenter
Lactose fermenter → colonies turn pink on MacConkey agar
Does not ferment sorbital
Causes hemorrhagic colitis, hemolytic uremic syndrome (“H for hold the antibiotics, hamburger, and HUS”)
Shiga-like toxin inactivates 60S ribosome by removing adenine from rRNA
Most common serotype if O157:H7
Enteroinvasive E. coli (EIEC)
Gram - rod
Oxidase -
Glucose fermenter
Lactose non-fermenter
Causes bacillary dysentery
Invades intestinal mucosa (shigella-like) but does not produce shiga toxin
Enteropathogenic E. coli (EPEC)
Gram - rod
Oxidase -
Glucose fermenter
Lactose fermenter → colonies turn pink on MacConkey agar
Causes diarrhea in infants (“P for pediatric”)
Pedestal formation
Adheres to apical surface → flattens villi → prevents absorption
Enterotoxigenic E. coli (ETEC)
Gram - rod
Oxidase -
Glucose fermenter
Lactose fermenter → colonies turn pink on MacConkey agar
Causes watery diarrhea in travelers (“T for traveler”) and children
LB (heat labile) toxin is cholera toxin-like→ overactivates adenylate cyclase → ↑ cAMP → ↑ Cl- and H20 secretion in gut
ST (heat stable) toxin → overactivates guanylate cyclase → ↑ cGMP → ↓ resorption of NaCl and H20 in gut
Erhlichia chaffeensis
Gram -
Obligate intracellular in hematopoetic cells
Lone star tick
Human Monocytic Erhlichiosis
Cytoplasmic mulberry inclusion in leukocytes (see picture)
Escherichia coli
Gram - rod
Lactose fermenter → colonies turn pink on MacConkey agar
Colonies show green metallic sheen on EMB agar
Oxidase -
Encapsulated
Most common cause of UTI
fimbriae → cystitis, pyelonephritis
K capsule → pneumonia, neonatal meningitis
LPS endotoxin → septic shock
Escherichia coli K1
Gram - rod Lactose fermenter Sialic acid capsule Can cause meningitis, bacterimia in newborns
For what organisms do you use Sabouraud agar?
Fungi
Franciscella tularensis
Gram - coccobacilli
Facultative intracellular pathogen lives in macrophages
Requires cysteine in grow
Acquired via exposure to ticks, rabbits, deer fly
Causes tularemia
Fusobacterium nucleatum
Gram - rod Anaerobic Causes periodontal disease, pleuropulmonary infection, linked to colorectal cancer
Gardnerella vaginalis
Gram variable rod
β-hemolytic
Elevated in bacterial vaginosis –> thin, grayish/white discharge and fishy odor with KOH
Diagnose with elevated pH (>4.5), Whiff test, clue cells
Treat with metronidazole or clindamycin
Group B Streptococci
Gram + cocci Catalase - Beta-hemolytic CAMP test + Bacitracin resistant Common cause of meningitis, bacteremia in newborns
HACEK
Haemophilus parainfluenzae, Aggregatibacter acetomycetemcomitans, Cardiobacterium hominis, Eikenella corrodens, Kingella kingae a/w endocarditis with negative blood cultures
Haemophilus ducreyi
Gram - coccobacillus
Culture with enriched agar (factors X and V + CO2)
Causes painful ulcers (chancroid) and possibly inguinal lymphadenopathy
Haemophilus influenzae
Gram - coccobacilli
Oxidase +
Culture on blood agar requires factors X (hematin, heat stable) and V (NAD+, heat labile) to grow; S. aureua supplements NAD+
Type b (Hib) is encapsulated (polyribose-ribitol phosphate) and causes meningitis in infants, epiglottitis, cellulitis, pneumonia (secondary, COPD)
Non-typable/non-encapsulated causes conjuctivitis, otitis media, sinusitis
IgA protease cleaves IgA to colonize respiratory mucosa
Tx mucosal infections: amoxicillin ± clavulanate
Tx meningitis: ceftriaxone; prophylaxsis for close contacts with rifampin
Hib vaccine (conjugated)
Helicobacter pylori
Gram - spiral rod (comma-shaped)
Catalase +
Oxidase +
Urease +
Silver stain
Type I carcinogen
Causes gastritis, ulcers, adenocarcinoma, and MALT lymphoma
Contains urease, VacA, CagA
Protective against asthma, active TB, esophageal cancer
Dx: urea breath test, fecal antigen test
Tx: triple therapy (PPI + clarithromycin + amoxicillin or metronidazole)
Hemolytic uremic syndrome
a/w EHEC (shiga-like toxin producing E. coli)
S&S: anemia, thrombocytopenia, acute renal failure
Toxin damaged endothelium → microthrombi form (↓ platelets) → mechanical hemolysis (schistocytes) + decreased renal blood flow
How do superantigens cause toxic shock syndrome?
Toxins (TSST-1 for staph, exotoxin A for strep) bring MHC II and TCR in proximity to outside of antigen binding site to cause overwhelming release of IFN-γ and IL-2
S&S: fever, rash, shock
Klebsiella pneumoniae
Gram - rod
Lactose fermenter (fast) → mucoid colonies turn pink on MacConkey agar
Encapsulated
Urease +
Thick mucoid capsule –> current jelly suputum
Pneumonia in malnourished, alcoholics, diabetics, nosocomial UTI
Lactobacilli (L. acidophilus)
Gram + rod Converts lactose to lactic acid Normal oral flora that can cause dental caries
Legionella pneumophila
Gram - rod, primarily intracellular
a/w water aerosols
Doesn’t gram stain well → silver stain
LPS can be detected in a urine sample
Culture on charcoal yeast with iron and cysteine
Causes high fever + GI symptoms + pneumonia (typical and atypical), hyponatremia
Treat with macrolide or quinolone