Microbiology Bacteria Flashcards
Which bacterial structure protects against osmotic pressure?
Peptidoglycan (also gives rigid support)
What is peptidoglycan made of?
Backbone = sugar
Side chains = peptides
*you can remember this because transPEPtidases link the side chains, so the side chains must be protein
What is the major surface antigen of gram +? gram -? For each of these types of bacteria, what STRUCTURE induces the host response?
SURFACE ANTIGENS
Gram +: Cell wall
Gram -: Outer membrane
INDUCTION OF TNF and IL-1:
Gram+: Lipoteichoic acid
Gram-: Lipid A (LPS = O saccharide + lipid A)
Where do oxidative and transport enzymes of bacteria reside?
In the PLASMA membrane… which is below the cell wall in gram +’s, and below to outer membrane and little bits of peptidoglycan in gram -‘s
T or F: Both gram + and gram - have peptidoglycan
True! But gram positive have more.
Which ribosomal subunits do bacteria use? Humans?
Bacteria: 50S and 30S –>70S
Humans: 60S and 40S –> 80S
*memory: Eukaryotes are EEEven, prOOkaryotes are Odd
Where do beta-lactamases and hydrolytic enzyme in bacteria reside?
The periplasm, above the cytoplasmic/plasma membrane
What enzymes does the periplasmic space contain? The plasma membrane?
Periplasmic space: B-lactamases, hydrolytic enzymes
Cytoplasm: Oxidative enzymes, transport enzymes
What are bacterial piluses (used for sex/conjugation and adherence to cell surface) made of?
Glycoprotein
What are bacterial flagellum (motility) made of?
Protein
What 3 substances are bacterial spores made of?
- Keratin-like coat
- Dipicolinic acid
- Peptidoglycan
*memory: SPOons (spores) can be used for DIP (dipicolinic acid) instead of CARROTS (keratin coat)
What are plasmids made of?
DNA
What is the main purpose of a bacterial capsule?
Protection against phagocytosis
What is a bacterial capsule made of? Which bacteria is the exception to this?
Usually made of polysaccharides
Exception: Bacillus anthracis (Anthrax) contains D-glutamate
*memory: Anthrax is D (the) GLoomy (glutamate) exception
What bacterial structure mediates adherence to surfaces, especially catheters? What is it made of?
Glycocalyx (AKA “slime layer” AKA exopolysaccharide layer)
Made of polysaccharides
What are the gram positive bacteria?
Listeria (listen) Staph (stop) Strep (strapping) Cornyebacterium (corny) Clostridium (closets) (in) Mycobacterium (my) Propionibacterium (proper) Lactobacillus (ladies) Gardnerella (Garden) *gram variable (I'm) Actinomyces (actually) Nocardia (not) (kidding!)
What are the gram positive cocci?
- Staphylococcus
2. Streptococcus
What are the gram negative cocci?
- Neisseria
2. Moraxella catarrhalis
What are the zoonotic gram negative bacteria?
- Bartonella
- Brucella
- Francisella
- Pasteurella
*memory: Bark Bark For Pets
What are the 3 respiratory gram negative bacteria?
- Bordetella (whooping cough)
- Haemophilus
- Legionella (Legionairre’s, pontiac fever)
What are the intracellular bacteria? How do we identify them?
- Chlamydiae
- Rickettsiae
Identify with Giemsa stain (and Borrelia too)
What are the spirochetes?
- Borrelia (lyme disease)
- Leptispira
- Treponema (syphilis)
What are the branching filamentous bacteria? Are they gram + or -?
- Actinomyces
- Nocardia
Gram positive
Which bacteria do not gram stain well?
*memory; These Microbes May Lack Real Color
Treponema (these) –> dark field microscopy
Mycobacteria (microbes) –> acid-fast/carbolfuschin/ziehl-neelsen stain
Mycoplasma (May) –> ?
Legionella (Lack) –> silver stain
Rickettsia (Real) –> Giemsa
Chlamydia (Color) –> Giemsa
Which bacteria need Giemsa stain?
- Chlamydia
- Rickettsia
- Borrelia
and also: Trypanosomes (but use dark field for treponema syphilis), plasmodium
What bacteria need PAS (periodic acid-Schiff) stain? Which substance does this ID?
Tropheryma whipplei (Whipple disease = malabsorption, cardiac, arthritis, neurologic symptoms)
Identifies glycogen
What organisms need Acid fast staining? What are other names for this stain?
- Mycobacteria (TB, leprosy)
- Nocardia (Branching filamentous, cutaneous and pulm infection)
- Cryptosporidium oocytes (watery diarrhea, severe in AIDS, transmit via oocysts in water)
Other names: Carbol-fuchsin, Ziehl-Neelsen
What organisms need India ink stain?
Cryptococcus neoformans (especially for CSF. Can use mucicarmine for bronchowash)
*memory: Picture pigeons dipping their feet in india ink, and getting those indian ink drops on their foreheads
What organisms needs silver stain?
- Fungi (like pneumocystis and more)
- Legionella *memory: A Legionnairre army guy with a silver button
- H. pylori *memory: Helicopters are made of silver
What is cultured on chocolate agar?
H. Flu (class: and Neisseria)
*memory: Chocolate agar has factors V and X because when a kid has the FLU, mom goes to “5 and dime” (V and X) to buy CHOCOLATE
How do you culture Neisseria (complicated!)
- Thayer-Martin Agar
- Vancomycin (inhibits gram +)
- Trimethoprim
- Colistin (inhibits other gram neg organisms… no longer used in people because nephrotoxic… except for multidrug resitant pseudomonas or klebsiella)
- Nystatin (inhibits fungi)
*memory: THese (THayer martin) Very (vancomycin) Typically (Trimethoprim) Culture (Colistin) Neisseria (Nystatin)
How do you culture Bordetella Pertussis?
- BORDET-Gengou agar
- Potatoes *memory: BORD leo up like a POTATO
- Regan-Lowe medium *then go to LOWes
- Charcoal *to get some CHARCOAL
- Blood
- Antibiotic
How do you culture Cornyebacterium diptheriae?
- Tellurite agar
- Loffler medium
*memory: DIP into your courage and TELL her OFF
How do you culture mycobacterium TB?
Lowenstein-Jensen agar
*memory: TBT to Dr. Jensen
How do you culture Mycoplasma pneumoniae?
- Eaton agar
- Cholesterol
* memory: Mycoplasma EATs cholesterol because its so skinny it doesnt have its own cell wall
What does MacConkey agar do? Which organisms is it useful for?
Turns colonies of lactose-fermenting enterics pink
macConKEES = Citrobacter Klebsiella E. Coli Enterbacter Serratia
What agar is used to grow E. Coli?
Eosin-methylene blue (EMB). E coli shows up black with metallic green sheen.
What 3 things are used to grow Legionella?
- Charcoal yeast extract agar
- Cysteine
- Iron
*memory: A french LEGIONAIRRE with a SILVER helmet (silver stain), sitting around a fire with CHARCOAL, holding his IRON dagger. He is no SISSY (cysteine)
What agar is used for Fungi?
Sabouraud agar
*memory: Sab’s a Fun Guy
What are the obligate aerobes?
- Nocardia
- Pseudomonas
- Mycobacterium TB
*memory: Nagging Pests Must Breathe
Which bacteria is seen in burn patients?
Pseudomonas (obligate aerobe)
Which bacteria are obligate anaerobes?
- Fusobacterium
- Clostridium
- Bacteroides
- Actinomyces
*memory: Frankly Cant Breathe Air
Which antibiotic is NEVER effective against anaerobes?
Aminoglycosides. They need O2 to be taken up.
*memory: Amin-O2-glycosides
What 4 properites do anaerobic bacteria have?
- Foul smelling (due to short chain fatty acids)
- Difficult to culture
- Produce gas in tissues (CO2 and H2) *memory: remember clostridium perfingens is gas gangrene, and clostridium is anaerobic
- Susceptible to oxidative injury (dont have catalse or superoxide dismutase)
What are the 3 steps of the oxidative burst?
- O2 -> O2- (NADPH oxidase)
- O2- -> H2O2 (superoxide dismutase)
- H2O2 -> HOCl (myeloperoxidase)
What does catalase do?
H2O2 -> H2O + O2 (allows bacteria to dismantle H2O2, after they use their superoxide dismutase to turn O2- to H2O2)
What does glutathion peroxidase do?
OH- -> H2O
Which bacteria are considered “ATP parasites” because they rely on host mitochondria to make it?
The intracellular bacteria (Rickettsia, chlamydia, coxiella)
*memory: stay INtracellular when its Really CHilly and COld
Which bacteria are facultative intracellular?
*memory: Some Nasty Bugs May Live FacultativeLY
Salmonell (some) Neisseria (Nasty) Brucella (Bugs) Mycobacterium (May) Listeria (Live) Francisella (Facultative...) Legionalla (L) Yersina pestis (Y)
What are the encapsulated bacteria?
*memory: SHiNE SKiS
Strep PNEUMO H. INFLUENZA TYPE B (i) Neisseria MENINGITIDIS E. COLI Salmonella TYPHI Klebsiella PNEUMONIAE Strep GROUP B
Does group A strep have a capsule?
Nope. Just Group B strep and strep pneumo
Why are vaccine containing polysaccharide capsule antigens usually conjugated to a carrier protein?
Only proteins, NOT polysaccharide antigens, can be presented to T cells. If there is a conjugate protein, the cell can chew it up and present it on MHC to a T cell. This allows the B cells - which have developed antibodies from the polysaccharide part of the vaccine - to class switch and form memory cells.
What are the conjugated and non-conjugated pneumococcal vaccines?
Conjugated: PCV (stands for pneumococcal conjugate vaccine) = Prevnar
Unconjugated: PPSV (stands for pneumococcal polySaccharide vaccine) = Pneumovax
*memory: PneumoVAX needs to get its FACTS straight… its just not as good
NOTE: I think Prevnar will form long lasting IgG and IgE antibodies, wherease pneumovax will form short lasting IgM antibodies
Besides the pneumococcal vaccines, what 2 other vaccines do we have?
- H. Flu type B (made of polyribosyl phosphate [PRP] conjugated to diptheria toxin)
- Neisseria Meningitidis (also conjugated… although I think there is a polysacch version that should not be given to kids)
What are the urease positive organisms?
*memory; CHuck norris hates PUNKSS
Cryptococcus
H. Pylori
(uck norris hates)
Proteus Ureaplasma Nocardia Klebsiella Staph epidermis Staph saprophyticus
What are the catalase positive organisms?
*memory: cats Need PLACESS
Nocardia Pseudomonas Listeria Aspergillus Candida E. Coli Staph Serratia
Which bacteria produce a yellow pigment?
- Actinomyces
- > Note: Yellow “sulfur” granules (made of filaments of bacteria) in a pus-forming lesion is basically diagnostic for actinomyces
- Staph Aureus
- > Yellow means gold
Which bacteria produces a blue-green pigment?
- Pseudomonas aeruginosa *memory: AERUGula is green
2. E. Coli produces black colonies with a green-meallic sheen on EMB agar
Which bacteria produces a red pigment>
Serratia marcescens *memory: red MARASCENO cherry
Which bacteria produces protein A? What is the action of protein A?
Staph Aureus *memory: Call it “protein Aureus”
Binds the Fc region of IgG, to flip it around and prevent opsination and phagocytosis
Which bacteria produce protein M? What is the action of protein M?
Strep Pyogenes *memory: Don’t eat (phagocytosis) My (M protein) pie (pyogenes)
Helps prevent phagocytosis. Also, is the reason molecular mimcry results in acute rheuMatic fever
Which bacteria produce IgA protease?
Strep pneumo, H flu, Neisseria (meningitidis AND gonorrhoeae)
*memory: IgA protease is noSHiN Igceptionally (Ig) special, because 2 bacteria have it
What is a type 3 secretion system?
AKA injectisome. Allows direct delivery of toxins from gram negative bacteria (like pseudomonas, salmonella, shigella, E. coli) into host cells.
Which types of bacteria have exotoxins?
Both gram neg and gram positive
endotoxins = only gram neg
Exotoxin vs. Endotoxin: Where are the genes for each location
Exotoxin: Plasmids, bacteriophages (Phage toxins = ABCDE… shigA, Botulinum,Cholera, Diptheria, Erthrocyte lysis strep pyogenes)
Endotoxin: Bacterial chromosome
Exotoxin vs. Endotoxin: Which is secreted from the cell?
Exotoxin
Exotoxin vs. Endotoxin: Which has a higher toxicity?
Exotoxin
Exotoxin vs. Endotoxin: Which is more antigenic (induces more antibodies)?
Exotoxin. Endotoxins are poorly antigenic.
How do endotoxins such as Lipid A on gram negatives cause problems?
Induce... IL-1 --> Fever TNF-A--> Fever NO --> Hypotension C3a --> Edema (mast cells?) C5a --> Attract neutrophils Tissue factor --> DIC
Exotoxin vs. Endotoxin: Which can be used as a vaccine?
Exotoxin
Exotoxin vs. Endotoxin: Which is stable at 100 deg C for 1 hour?
Endotoxin (exception: Staph aureus is an exotoxin that causes food poisoining and is resistant up to 120 deg C. All other exotoxins are destroyed by the time tepm reaches 60 deg C)
What type of toxin does tetanus (clostridium tetani) have?
Exotoxin (its a gram positive, so it CANT do endotoxin!)
What type of toxin does Neisseria meningitidis have?
Endotoxin
What are the 6 categories of EXOTOXIN mechanisms and the bacteria in each?
- Protein synthesis
- Shigella
- EHEC
- Pseudomonas aeruginosa
- Diptheria
* memory: will is PRecious (protein synthesis) but he SHould (shiga) Experiment (EHEC) with PSEUDO (pseudomonas) DIP (diptheria - Increased fiuid secretion
- ETEC (heat labile and heat stable)
- Anthrax
- Cholera - Inhibit Phagocytic activity
- Bordetella/whooping cough - Inhibit NT release
- Tetanus
- Botulinum - Lyse cell membranes
- C. Perfringens/Gas gangrene
- Strep pyogenes - Superantigens
- Strep pyogenes
- Staph Aureus
How does Diptheria toxin work?
Inactivates EF2 (like pseudomonas) to cause pharyngitis, pseudomembranes in the throat, ad bull neck
*memory: EF up your throat
How does pseudomonas aeruginosa’s toxin (‘Exotoxin A’) work?
Inactivates EF2 (like diptheria) to cause host cell death
How does Shigella’s toxin (Shiga toxin) work?
Inactivates 60S ribosome by removing adenine from rRNA, which causes GI mucosal damage and HUS
*memory: SHixty (60) S inactivation
How does Enterohemorrhagic E coli (EHEC)’s toxin work?
Inactivates 60S ribosome by removing adenine from rRNA (like Shiga toxin. So its called Shiga-like toxin).
This results in HUS. Prototype: O157:H7
What is the difference between Shiga Toxin and Shiga-like Toxin?
Shiga-like toxin, produced by E. coli, does not invade host cells. HOWEVER, it still causes bloody diarrhea because it causes necrosis and inflammation
How does Enterotoxigenic E Coli (ETEC)’s toxin work?
It has 2 toxins that both cause watery diarrhea:
- LT (heat labile) : Overactive cAMP –> Cl- secretion
- ST (heat stable): Overactive cGMP –> decreased NaCl resoprtion
- memory: Labile (LT) in the Air (AMP) moves stuff more (Cl secretion)
- memory: Stable (ST) on the Ground (GMP) moves stuff less (decreased NaCl resoprtion)
How does Bacillus anthracis toxin work?
Mimics cAMP to cause an edematous border of black eschar in Anthrax skin lesions.
Thats why its called “Edema Toxin”
How does Vibrio cholerae’s toxin (Cholera toxin) work?
Permanently activates Gs –> overactive cAMP –> Cl- secretion
How does Bordetella pertusses’s toxin (Pertussis toxin) work?
Disables Gi –> overactive vAMP –>impaired phagocytosis –> “100 day cough” in adults and “whoop” inspiration cough in children
*memory: I cAMPed out too much in the library and disabled by immune GuYs, so I got a bad cough
How does clostridium tetani’s toxin (Tentanospasmin) work?
Cleaves SNARE proteins required for release of GABA and Glycine neurotransmitters from RENSHAW CELLS of the spinal cord –> spasticity, risus sardonicus, lockjaw, opisthotonos (back muscle contraction), violent painful contracts after loud noise
How does clostridium botulinum (Botulinum toxin) work?
Cleaves SNARE proteins requires for release of Acetylcholine at neuromuscular junctions –> flaccipd paralysis, floppy baby, normal nerve conduction but decreased muscle compound action potential
Which toxin is NOT an A-B toxin (B component binds to host cell, A component attaches ADP-ribosyl to disrupt host cell proteins)?
ETEC’s heat stable toxin
*memory: this toxin is stable; it doesnt do any weird reaching over and activation stuff
How does clostridium perfringens toxin (Alpha toxin) work?
It is a phospholipase (lecithinase) –> degrades tissues and cell membranes –> myonecrosis “gas gangerene”, hemolysis “double zone” on blood agar, edema
How does strep pyogenes erythrogenic toxin, Streptolysin O, work?
Degrades cell membranes –> Lyses RBCs and causes Beta-hemolysis
How is strep pyogenes’ eryhtrogenic toxin helpful in diagnosing rheumatic fever?
ASO antibodies = antibodies against streptolysin O, there are used to diagnose rheumatic fever
How does strep pyogenes’ non-ertyhrogenic toxin, Exotoxin A, work?
Binds to MHC2 and TCR and cross links them –> Tons of IL-1, IL-2, IFN-gamma, TNFalpha –> shock (same as staph aureus TSST-1 toxin)
How does staph aureus Toxic shock syndrome toxin (TSST-1) work?
Binds to MHC2 and TCR and cross links them –> Tons of IL-1, IL-2, IFN-gamma, TNFalpha –> shock (same as strep pyogenes Exotoxin A)
What is “transformation”?
Ability to take up naked DNA from the environment. Also called “competence”.
Which bacteria are “competent”?
S. pneumo, H. flu, Neisseia (SHiN)
Adding what to the environment would prevent bacteria from doing “transformation” (taking up naked DNA)?
Deoxyribonuclease… because this degrades naked DNA
What is F+ x F- conjugation vs. Hfr X F- conjugation?
FxF: PLASMID DNA (a single strand of it) is transferred across the mating bridge
HfrXF: PLASMID AND CHROMOSOMAL bacterial DNA is transferred when plasmid DNA is incorporated into the bacterial chromosomal DNA and then replicated
(Hfr = high frequency recombination)
What is transposition?
When transposons (segments of DNA) “jump” from plasmids to chromosomal DNA and mix up the genes in the process. They can then transfer genes from one bacteria to another
(ex: Vancomycin resistant staph got the VanA gene from vancomycin-resistant enterococcus)