Microbiology and immunology Flashcards

1
Q

nucleoid

A

typically circular chromosomes, not membrane bound but restricted to an area called the nucleoid
other small self replicating dna molecules present in the cytoplasm- called plasmids

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2
Q

bacteria cell wall function

A

provides a rigid macromolecular layer- strength
protects cells from osmotic lysis and keeps cell shape
peptidoglycan present

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3
Q

structure of peptidoglycan

A

NAGNAMNAGNAM carbohydrate chains
vertical cross linking
transpeptidase- the enzyme that cross links the peptidoglycan chains- creating a rigid cell wall

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4
Q

gram positive vs gram negative
including staining

A

gram positive- thick layer of peptidoglycan ontop of plasma membrane (20-80nm) . traps crystal violet, therefore staining purple
gram negative- thin layer (5-10nm) of peptidoglycan in between plasma membrane and outer membrane.
Staining- crystal violet easily wiped away leaving a pink stain from the red safrin dye

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5
Q

what does chemotaxis mean

A

when bacteria move along a concentration gradient, towards chemical attractants (positive) or away from repellent (negative)

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6
Q

adherance factors - Fimbrae

A

adhesions/ aderance pilli
cause bacteria to stick to surfaces
Not all bacteria have them- they are an inherited trait
shorter and in higher numbers than flagella ( not involved in motility)

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7
Q

adherance factors- Pilli

A

Pilli, Pillus
attatchment to other bacteria
transfer genetic material - conjugation
a form of horizontal gene transfer

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8
Q

capsule vs slime layer
their two functions

A

capsule- glycocalx (jelly like polysaccaride) in a defines structure attatched firmly to cell wall
slime layer- disorgansied without cell shape and is loosely attatched

virulence- protect bacteria from being phagocytosed and immune cell engulfment. They prevent dessication.

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9
Q

bacterial endospores, their role and when they form

A

bacterial spores are formed in unfavourable growth conditions- under stress.
They then germinate in favourable conditions
they protect cells from stress, only present in some gram postive bacteria

High cell density and nutrient starvation= stress causing endospores

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10
Q

why are prokaryotes so dominant

A

they evolve and adapt fast- 13 minute doubling time

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11
Q

process of binary fission in prokaryotes

A

reproduce asexually
one cell into two cells
1) chromosomes replicate
2) one copy of origin at each end of the cell
3) replication finishes
4) two identical daughter cells result

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12
Q

closed batch culture system

A

limited amount of nutrients provided
standard method of studying microorganisms in culture
the method uses dictates what occurs, not the shape of the flask

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13
Q

what are the stages for a closed batch culture system

A

lag phase- getting biosynthetic reactions running, dependent on history of the innoculum

exponential phase- cells actively dividing, doubling in constant time

Stationary phase- cells stop growing, cryptic growth occuring (organsims surivive by eating the contents of the dead cells in the system)

Death phase- cell death, more cells are dying rather than growing

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14
Q

what can now growth indicate on a graph

A

that cell death and growth are in balance

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15
Q

what are the three things that microbes need to grow

A

carbon source- building blocks for the macromolecule synthesis

energy source- to drive anabolic and catabolic reactions

reducing power- energy/ electron carries NAD+ and NADP+

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16
Q

What is an auxotroph

A

an organism unable to synthesise one or more essential growth factors and wont grow unless these are provided

17
Q

what does cross feeding mean?

A

one species gaining metabolic products off another species
allows for survival of auxotrophs through sharing resources generated by other organisms

18
Q

pros and cons of culture dependent methods

A

eg closed batch systems
pros- access to phenotype
can study one organism at a time
can manipulate conditions to see organisms response

cons: not all organsims can be cultured
doesnt match real world conditions
too many species to grow them all
culturing requires precise conditions to match microbes needs

19
Q

culture independent methods

A

relies mostly on mostle nucleic acid based methods. no culturing required
uses sequencing or metabolic profiling to study all microbes in a sample

pros- allows access to genotype
study many organisms at a time
shows communities in nature
Target non culturable organsims
provides access to unknown info

cons- no pure culture so unable to manipulate them
expensive and complex

20
Q

what is catabolism

A

breaking down substrates to generate energy (ATP)

21
Q

what is anabolism

A

AKA- biosynthesis
creating macromolecules that cells require using the energy generated (ATP)

22
Q

How is energy harvested?

A

chemical energy is stored in bonds
when bonds are broken they release energy that can be captured in new bonds (ATP)
ATP bonds can be later broken to release that energy