Microbiology Flashcards
One way bacteria can be classified as gram positive and gram negative. What do these terms mean?
Gram positive: cell walls are composed of thick peptidoglycan. They stain purple when subject to gram stain procedure.
Gram negative: Thin cell wall of peptidoglycan. Stain pink when subject to gram stain procedure as they do not retain the purple.
Clinical implication of difference between gram neg and gram pos bacteria
Gram positive bacteria have a cell wall that is easier to penetrate even though it is thicker. Due to this they tend to be susceptible to more antibiotics whereas gram negative bacteria are often less susceptible.
What is MRSA and what is its implication in healthcare?
Methicillin resistant staphlococcus aureus. It is a strain of bacteria with antibiotic resistance, particularly to B-lactams, gentamycin, tetracycline and erythromycin. It can cause a variety of problems in healthcare settings:
- sepsis
- pneumonia
- joint replacements which can be irreparably damaged
- surgical site infections
- death
- bloodstream infections
A mother brings her 18 month child to General Practice complaining of having seen small white “threads” in the nappy. What is the likely cause and the most appropriate treatment?
Threadworms - Mebendazole
What is the commonest condition associated with Mycobacteria? What term is used to describe these bacteria which is relevant to detecting them in the labs?
Tuberculosis - Acid-fast meaning they are resistant to discolouration by standard lab processes and require specific tests to be requested.
What are the five properties of a virus?
- They grow only inside living cells
- They possess only one type of nucleic acid, RNA or DNA
- They have no cell wall structure but have an outer protein coat. Some viruses have a lipid envelope
- Inert outside the host cell, but carry enzymes that function inside the cell
- They have protein receptors on their surface to allow attachment to susceptible host cells
Name three of the ways that viruses can cause disease
- Damage by direct destruction of host cells
- Damage by modification of host cell structure or function
- Damage involving ‘over-reactivity’ of the host as a response to infection
- Damage through cell proliferation and cell immortalisation
- Evasion of both extracellular and intracellular host defences
What viral vaccine has been introduced to the UK programmme and what cancer is it designed to prevent?
HPV given to all girls’ routine vaccines designed to protect against cervical cancer
What is the commonest causative organism in fungal nail infection? Name three other possible differential diagnoses of fungal nail infection.
Trichophyton rubrum - dermatophyte is the commonest type.
Other differential diagnoses include: Psoriasis, Lichen planus, Trauma, Eczema, Yellow nail syndrome, Periungual squamous cell carcinoma/Bowens disease
A patient presents with fever and recent travel overseas to Africa. What protozoal illness should be top of your differential diagnosis and what is the key diagnostic test?
Malaria. Blood test with giemsa stain.
Summarise what an antibiotic is and how it works
An antibiotic is medication which stops or inhibits the growth of microorganisms (bacteria). They do this by binding a target site on the bacteria. Target sites are defined as points of biochemical reaction crucial to the survival of the bacterium and these sites will vary with the antibiotic class and bacterium.
Give four possible clinical situations that might indicate a need for an HIV test
- Prolonged episodes of herpes simplex
- Persistent frequently recurrent candidiasis
- Recurrent infections
- Oral candida
- Indicators of immune dysfunction
- Odd looking mouth lesions
- New onset abnormal skin lesions (Kaposi’s sarcoma)
In summary suspect in any medical condition that is recurrent, severe or unexplained.
Difference between gram neg and gram pos bacteria
Gram positive bacteria have a thick peptidoglycan layer and no outer lipid membrane so they stain purple
Gram negative bacteria have a thin peptidoglycan layer and have an outer lipid membrane so they stain pink
Name a catalase pos and catalyse neg aerobic, gram positive cocci
Catalase pos = staphylococcus
Catalase neg = enterococcus and streptococcus
What are the 3 ways in which bacterial genetic variation occurs?
Transformation: horizontal gene transfer where bacteria take genetic material from environment
Transduction: requires bacteriophage to inject DNA into bacterial cell
Conjugation: transfer of plasmid through pilus transferring info from one bacteria to another
What bacteria am I describing?
- Gram positive
- Cocci
- Blood agar shows golden colonies
- Non-motile and non spore forming
- Catalase positive so they foam up when hydrogen peroxidase is applied
Stpahylococcus aureus
If S. aureus invades the epidermis what condition can be caused?
Impetigo
If S. aureus invades the dermis what condition can be caused?
Cellulitis
How does s aureus infection in the blood stream lead to sepsis?
Infection into the bloodstream = septic thrombophlebitis (infected blood clot) which can lead to bacteremia → widespread immune reaction → blood vessels → hypotension and poor perfusion to organs → SEPSIS.
How can S aureus affect the heart?
Infection into heart = causes clumps called vegetation which damage the heart valves → infective endocarditis
How can S aureus affect the CNS?
Infection into CNS = bacterial meningitis or epidural abscess in the spine
How can s aureus affect the lungs?
Infection into lungs = severe pneumonia
When treating MRSA, which antibiotics are chosen?
clindamycin or vancomycin
What are strains of s aureus with complete resistance called?
VRSA
Which bacteria am I describing?
- cocci
- live on epidermis of skin and part of normal flora
- gram positive
- catalase positive
- urease positive (turn urea agar broth and phenol red into pink)
- coagulase negative so fibrinogen won’t break down and clump
Staphyloccocus epidermidis
What bacteria is the most dominant bacteria on the skin and colonises the nose, scalp, face, axilla?
S epidermidis
Which bacteria is a common cause of prosthetic valve endocarditis and prosthetic joint infections?
S epidermidis
Treatment for an infected prosthetic joint with s epidermidis?
vancomycin with rifampicin can be added and infected device removed
What bacteria is the causative agent of strep pharyngitis, scarlet fever, impetigo and necrotising fasciitis?
Streptococcus pyogenes
Diagnosis of s pyogenes?
rapid strep test for throat infections
definitive cultures from affected site
treatment for s pyogenes?
penicillin G
ceftriaxone alternative
what is a complication of strep throat/pharyngitis?
Following pharyngitis there may be acute rheumatic fever due to M protein that mimic the structure of proteins which make up tissues in the body (myosin of heart muscle and smooth muscle cells). The immune system then activates a type II hypersensitivity reaction releasing IgM and IgG antibodies aimed at destroying the M protein but instead attack the heart muscle (myocarditis, heart valves and causing infective endocarditis or pericarditis)
what is post-streptococcal glomerulonephritis? What are the signs?
- Complication causing acute inflammation of the kidneys’ glomeruli commonly seen after impetigo about 2 weeks post infection due to a type III hypersensitivity reaction
- Facial oedema
- Dark red urine because glomerular damage allows RBC’s to pass into the urine
What is the most common infection that strep pneumoniae causes? What other infections can it cause?
Pneumonia
Others
- meningitis
- pneumococcal endocarditis
- septic arthritis
- rhinosinusitits
- otitis media
What role does the spleen play in immunity?
the spleen plays an important role in fighting against encapsulated organisms and therefore, those with spleen problems, will be more susceptible to these types of infections
What bacteria would you suspect to be the causative agent in food poisoning where food has been cooked in big batches and kept warm for a long time such as in buffets?
Clostridium perfringens
- these bacteria thrive in anaerobic conditions so when they are exposed to oxygen they form spores and when conditions are right, they develop into bacteria again (such as when cooling foods or storing them) and can cause food poisoning
These symptoms are suggestive of what condition?
- abdominal cramping
- watery diarrhoea
- vomiting
Symptoms improve within a day
Food poisoning
Treatment for food poisoning?
Usually no abx, treatment focuses on keeping hydrated
Clostridium botulism can cause what syndrome in babies? What food is thought to be a potential vector for transmitting this bacteria to babies?
Floppy baby syndrome where it causes botulism and causes a flaccid paralysis.
Honey is thought to be a vector so should be avoided in the first 12m of life.
Which bacteria am I describing?
- gram positive bacilli
- forms spores
- thrives in deep compact soil
- produces toxins which affect the nervous system causing muscle spasm and rigidity
Clostridium tetani
What is the tetanic triad?
- locked jaw
- risus sardonicus (facial muscle spasm causing grin)
- opisthotonos (severe spasm of all muscles in body simultaneously)
Treatment for tetanus?
Tetanus immune globulin - anti-toxin that binds to circulating tetanospasmin
- muscle relaxants
- pain meds
- supportive measures
- tetanus vaccine for prevention
Which bacteria am I describing
- gram negative (stains pink)
- rod shaped
- encapsulated
- anaerobe
- catalase positive (foams when hydrogen peroxide is added to colony)
- lactose fermenting (turns phenol into yellow)
- when cultivated on eosin methylene blue agar it grows into black colonies with greenish-black metallic sheen
E coli
STEC (EHEC) causes what characteristic sign when someone is infected?
bloody, watery diarrhoea
Does ETEC cause bloody diarrhoea or watery diarrhoea?
Watery diarrhoea
Uropathogenic E coli (UPEC) causes 90% of what infection?
Causes 90% of community acquired UTIs and 50% of hospital acquired UTIs
What condition are these symptoms a sign of?
- high sustained fever
- abdo pain
- constipation followed by diarrhoea
- rose coloured spots on chest and abdomen
- hepatomegaly and splenomegaly as infection spreads
- dehydration, weakness, headaches and confused mental state
Typhoid fever
What is the 3rd most common causative agent of UTI and can also cause pneumonia? what type of urinary stones are formed by this bacteria and why?
Klebsiella pneumoniae
Causes struvite stones as klebsiella use urease to convert urea into ammonia and CO2 and this can combine and form ammonium which increases urine pH (more alkaline). Alkaline urine promotes precipitation of phosphate, calcium and magnesium which can combine to form struvite stones.