Microbiology Flashcards
Gram Stain
Bacteria- peptidoglycan layer
except treponema, leptospira, mycobacteria, mycoplasma, ureaplasma, legionella, rickettsia, chlamydia, bartonella, anaplasma, ehrlichia
(-) pink
(+) violet
Giemsa Stain
Rickettsia, chlamydia, trypanosomes, plasmodium, borrelia, H. pylori
PAS stain
stains glycogen, mucosaccharides
Whipple disease
Ziehl Neelsen stain
Acid bast bacteria (mycobacteria, Nocardia, protozoa)
India Ink Stain
Cryptococcus neoformans
Silver stain
Fungi
Fluorescent Ab Stain
PJ, giardia and cryptosporidium
Chocolate Agar
H. influenzae
Thayer Martin agar
N. gonorrhoeae, N. meningitidis
Bordet Genou agar
B. pertussis
Tellurite agar
C. diphtheriae
Lowenstein Jensen medium
M. tuberculosis
MacConkey agar
Lactose fermenting enterics
EMB agar
E. coli
Charcoal yeast agar
Brucella, francisella, legionella, pasteurella
Obligate intracellular
Rickettsia, Chlamydia, Coxiella
Facultative intracellular
Salmonella, Neisseria, Brucella, Mycobacterium, Listeria, Francisella, Legionella, Yersinia
Encapsulated bacteria
Pseudomonas, strep, H. flu, Neisseria, E. coli, Salmonella, Klebsiella
urease (+) organisms
proteus, Cryptococcus, H. pylori, Ureaplasma, Nocardia, Klebsiella, S. epidermidis, S. saprophyticus
Pigment producing
Actinomyces israeli- yellow
S. aureus- yellow
P. aeruginosa- green
Serratia- red
Exotoxin
polypeptide secreted from cell located on pasmid or bacteriophage. high adverse effects. toxoid vaccines
Tetanus, botulism, diphtheria, cholera
Endotoxin
out cell membrane of gram (-) that is not secreted from the cell. Made of Lipid A component of LPS from bacterial chromosome. low adverse effects. cause fever, shock, DIC. Induce TNF, IL1 and IL6. No vaccines.
Meningococcemia
Corynebacterium diphtheriase
Diphtheria toxin (exotoxin) --> inactivate EF2 --> pharyngitis with pseudomembranes on throat and severe LAD, myocarditis, neuropathies Gram + rods with metachromatic granules and Elek +
Pseudomonas aeruginosa
Exotoxin A –> inactivate EF2 –> host cell death
Shigella
Shiga toxin (exotoxin) –> inactivate 60S ribosome by removing adenine from rRNA –> GI mucosal damage, dysentery, enhance cytokine release –> HUS
Enterohemorrhagic E. Coli (O157’H7)
Shiga like toxin (exotoxin) –> inactivate 60S ribosome by removing adenine from rRNA –> enhance cytokine release –> HUS
DOES NOT INVADE HOST CELL
gram -
via undercooked meat, raw leafy vegetables
Enterotoxigenic E. Coli (Heat labile)
Heat Labile toxin (exotoxin) –> overactivates adenylate cyclase (increase cAMP) –> increase Cl- secretion in gut and H2O efflux –> watery diarrhea (travelers)
gram -
Enterotoxigenic E. Coli (Heat stable)
Heat stable toxin (exotoxin) –> overactivates guanylate cyclase (increase cGMP) –>decrease resorption of NaCl and H2O in gut –> watery diarrhea (travelers)
gram -
Bacillus anthracis
Anthrax toxin (exotoxin) –> mimic adenylate cyclase –> edematous borders of black eschar in cutaneous anthrax
Gram +, spore forming rod
colonies show halo projections
Vibrio cholerae
cholera toxin (exotoxin) –> overactivates adenylate cyclase by inactivating Gs –> increase Cl- secretion in gut and H2O efflux –> rice water diarrhea
Gram -, flagella, comma shaped, oxidase +
via ingestion of water or food (shellfish)
T(x): rehydration
Bordetella pertussis
Pertussis toxin (exotoxin) --> inactivate Gi --> activate adenylate cyclase --> whooping cough Gram - Catarrhal- low grade fever Paroxysmal- whooping cough Convalescent- recovery Prevent with Tdap, DTaP T(x): macrolides or bactrim
Clostridium tetani
Tetanoplasmin (exotoxin) –> proteases that cleave SNARE –> release inhibitory neurotransmitters from Renshaw cells in spinal cord –> spastic paralysis, lockjaw
Gram +, spores, obligate anaerobe
Clostridium botulism
Botulinum toxin (exotoxin) --> proteases that cleave SNARE --> release stimulatory signals at NMJ --> flaccid paralysis, diplopia, dysarthria, dysphagia and dyspnea Gram +, spores, obligate anaerobe
Clostridium perfringens
alpha toxin (exotoxin) –> phosphilipase that degrades tissue and cell membranes –> myonecrosis and hemolysis
Gram +, spores, obligate anaerobe
Food poisoning in 10-12 hours, resolution in 24 hours
Streptococcus pyogenes
Streptolysis O (exotoxin) –> protein that degrades cell membrane –> lyse RBC, host Ab against toxin used to d(x) rheumatic fever
Staph aureus
toxic shock syndrome (exotoxin) –> cross link B region of TCR to MHC II –> overwhelming release of IL1 IL2 IFNy TNFa –> shock, fever, rash
Streptococcus pyrogenes
Erythrogenic exotoxin A –> cross link B region of TCR to MHC II –> overwhelming release of IL1 IL2 IFNy TNFa –> shock, fever, rash, scarlet fever
a hemolytic bacteria
Gram + cocci, partial oxidation of Hb --> green/brown color Strep pneumoniae (Catalase - and optochin sensitive) Viridans streptococcus (Catalase - and optochin resistant)
B hemolytic bacteria
Gram (+) cocci. Complete lysis of RBCs –>pale
S.aureus (catalase and coagulase +)
Strep pyogenes (Catalase - bacitracin sensitive)
strep agalactiae (Catalase - bacitracin resistant)
Staphylococcus aureus
Gram +, B hemolytic, catalase +, coagulase +, cocci
Protein A binds Fc-IgG –> inhibit complement.
Causes inflammatory disease, TSST
MRSA
nosocomial and community acquired infections. Resistant due to altered penicillin binding protein.
TSST
fever, vomiting, rash, desquamation, shock, end organ failure
Increase AST and ALT, bilirubin
Prolonged use of tampons
Staphylococcus epidermidis
Gram +, catalase + coagulase - urease + cocci, novobiocin sensitive,
Does not ferment mannitol
Normal skin flora
infects prothetic devices and IV catheters
Staphylococcus saprophyticus
Gram + catalase + coagulase - rease +. Novobiocin resistant
Normal flora of female genitalis
Uncomplicated UTI
Streptococcus pneumoniae
Gram +, a hemolytic, lancet shaped diplococci, encapsulated, IgA protease, optochin sensitive, bil soluble
Meningitis, otitis media, pneumonia, sinusitis
Rusty sputum, sepsis in SCD and asplenic patients
Streptococcus viridans
Gram +, a hemolytic cocci, Optochin resistant, bile insoluble
Normal oropharynx flora
mutans and mitis –> dental caries
sanguinis –> damaged heart valves
Streptococccus pyogenes
Gram + cocci, M protein (rheumatic fever)
Pyogenic: pharyngitis, cellulitis, impetigo
Toxogenic: scarlet fever, TSST
Immunologic: rheumatic fever
Streptococcus agalactiae
Gram +, bacitracin resistant, B hemolytic. Babies
colonized vagina, causes pneumonia, meningitis and sepsis
Hippurate test + PYR-, produce CAMP factor
Streptococcus bovis
Gram +, colonizes the gut
cause bacteremia and subacute endocarditis and associated with colon cancer
Enterococci
Gram + cocci, penicillin G resistant
Normal colonic flora
cause UTI, biliary tract infection and subacute endocarditis
Catalase - PYR +
Cutaneous anthrax
painless papule surrounded by vesicles –> ulcer with black eschar –> uncommonly progress to bacteremia and death
Pulmonary Anthrax
inhalation of spores –> flu like symptoms that progress to fever, pulm hemorrhage, mediatstinitis
Bacillus cereus
Gram + rod, sores
causes food poisoning (rice)
emetic: nausea and vomiting within 1-5 hours via cerulide (preformed toxin)
Diarrhea: watery, nonbloody diarrhea and GI pain within 8-18 hours
Clostridium difficile
Gram +, spores, obligate anaerobe
Produce toxins A and B –> damage entorcytes –> water diarrhea –> pseudomembranous colitis
Toxic megacolon
Listeria monocytogenes
Gram + facultative intracellular rod
ingestion of unpasteurized dairy
Rocket tails via actin polymerization
causes amnionitis, septicemia, spontaneous abortion
meningitis in immunocompromised, neonates and older adults
self limited gastroenteritis in healthy
T(x) ampicillin
Nocardia
Gram +, long branching, aerobe, acid fast
soil
causes pulm infections in immuocompromised. cutaneous infections after trauma in immunocompromised
T(x) bactrim
Actinomyces
Gram +, long branching, anaerobe normal oral, reproductive and GI flora causes oral/facial abscesses that drain through sinus tracts, dental caries yellow sulfur granules T(x) penicillin
Mycobacteria
Gram +
tuberculosis- resistant to multiple drugs, fever, night sweats, weight loss, cough, hemoptysis. Serpentine cord
avium- causes disseminated disease in AIDS, resistant to multiple drugs
scrolfulaceum- cervical LAD in children
marinum- hand infection in aquarium handlers
Tuberculosis
+PPD if current or past infection
-PPD if no infection, sarcoidosis or HIV
Caseating granulomas with central necrosis and Langerhan giant cells
Leprosy
Mycobacterium leprae, acid fast bacilli, likes cool temperatures –> glove and stocking loss of sensation
d(x) skin biopsy or tissue PCR
Lepromatous Leprosy
presents diffusely over the skin with lion-like facies and is communicable
low cell mediated immunity with Th2 response
Lethal
T(x): clofazimine
Tuberculoid Leprosy
few hypoesthetic, hairless skin plaques
high cell mediated immunity with Th1 response and low bacterial load
T(x) dapsone and rifampin
Neisseria
Gram - diplococci
metabolize glucose and produce IgA proteases
LOS with endotoxin
Neisseria gonococci
No polysaccharide capsule, maltose acid detection, vaccine
STI
causes gonorrhea, septic arthritis, neonatal conjunctivitis, pelvic inflammatory disease, Fitz Hugh Curtis syndrome
D(x) NAT
T(x): certriaxone
Neisseria Meningococci
Polysaccharide capsule, maltose acid detection, vaccine
via resp and oral
causes petechial hemorrhages and gangrene toes, meningitis, Waterhouse Friderichsen syndrome
D(x): culture
T(x) rifampin, ciprofloxacin, ceftriaxone
Waterhouse Friderichsen Syndrome
adrenal insufficiency, fever, DIC, shock
caused by N. meningitidis
Haemophilus influenzae
Gram - rod, produce IgA protease
aerosol
causes otitis media, conjunctivitis, bronchitis, pneumonia and epiglottitis
Vaccine: type b capsular polysaccharide
T(x): amoxicillin, clavulamate, ceftriaxone
Actinebacter baumannii
Gram - aerobic, oxidase -
Resistant hospital acquired infection
cause ventilator associated pneumonia and septicemia in immunocompromised
Brucella
Gram - aerobic
ingestion of contaminated animal products
Survives in macrophages in the reticuloendothelial system
Non caseating granulomas
undulant fever, night sweats, arthralgia
t(x) doxycycline, rifampin, streptomycin
Legionella
Gram - rod Silver stain, charcoal yeast agar Ag in urine, hyponatremia aerosol (air conditioning) T(x): macrolide or quinolone Severe pneumonia, fever, GI and CNS symptoms (smokers and chronic lung disease)
Pseudomonas aeruginosa
Aerobic, motile, catalase +, gram -
Water
Pneumonia, sepsis, ecthyma gangrenosum (cutaneous necrotic lesions), UTI, DM, osteomyelitis, otitis externa, nosocomial infection, addicts, skin infection
Mucoid polysaccharide capsule
Produces phospholipase C, endotoxin (fever shock), exotoxin A (inactivate EF2), pigments
T(x): carbapenems, aminoglycosides, monobactams, polymixins, fluoroquinolones, 3rd and 4th gen cephalosporins, extended spectrum penicillin
Salmonella typhii
Gram - rods oxidase - , produce H2S, flagella, endotoxin, Vi capsule
disseminate in blood
monocytic immune response
Constipation then diarrhea
oral vaccine or IM vaccine
Typhoid fever (rose sots on abdomen, constipation, ab pain, fever, GI ulceration, hemorrhage
T(x): ceftriaxone, fluoroquinolones
All other salmonella species
Gram - rods oxidase - , produce H2S, flagella, endotoxin Poultry, eggs, pets PMN in disseminated disease via blood diarrhea no vaccine
Shigella
Gram - rod oxidase- cell to cell spread endotoxin and exotoxin PMN infiltration, M cell invasion crampy ab pain --> tenesmus, bloody stools No vaccine from fingers, flies, good, feces
Yersinia enterocolitica
Gram -
transmitted via pet feces, contaminated milk, pork
acute bloody diarrhea, pseudoappendicitis, reactive arthritis
Enteropathogenic E. Coli
Gram -
No toxin produced
adhere to apical surface, flattens villi, prevents absorption
Diarrhea (children)
Enteroinvasive E. Coli
Gram -
invade intestinal mucosa and causes necrosis and inflammation
Klebsiella
Gram - intestinal flora lobar pneumonia in alcoholics and DM when aspirated Currant jelly sputum nosocomial UTI, multidrug resistance
Campylobacter jejuni
Gram - comma shaped, oxidase +
bloody diarrhea (children)
fecal-oral
Guillain Barre syndrome and reactive arthritis
Helicobacter pylori
curved, flagella, gram -, + catalase, oxidase and urease
colonize in antrum of the stomach –> gastritis and PUD
D(x): breath test
T(x): amoxicillin, clarithromycin, PPI
Spirochetes
spiral shaped
Borrelia, leptospira, Treponema
Lymes Disease
Borrelia burgdorferi (via tick need deer)
1) erythema migrans
2) secondary dissemination, carditis, AV block, Bell palsy, migratory myalgias
3) encephalopathy chronic arthritis
T(x): doxycycline, amoxicillin, ceftriaxone
Leptospira interrogans
spirochete with hook shaped ends found in water with animal urine
Leptospirosis: flu like symptoms, myalgia, jaundice, photophobia
Weil Disease: jaundice and azotemia from liver and kidney dysfunction, fever, hemorrhage, anemia
Syphilis
Treponema pallidum. T(x) penicillin G
Primary Syphilis
painless chancre
Secondary Syphilis
maculopapular rash (palm and soles), condylomata lata, LAD, patchy hair loss Sero test: VDRL/RPR confirm with FTA-ABS
Tertiary syphilis
gummas, aortitis, neurosyphilis, Argyll Robertson pupil
broad based ataxia, Romberg +, charcot joint, stroke without HTN
Test spinal fluid with VDRL, FTA-ABS and PCR
Congenital syphilis
facial abnormalities (rhagades, snuffles, saddle nose, notched teeth, mulberry molars, short maxilla
saber shins, CNVIII deafness
Prevent: treat mom early in pregnancy
Jarisch Herxheimer reaction
flu like symptoms after antibiotics due to killed spirochetes releasing toxins
Gardenella vaginalis
gray vaginal discharge with fishy smell, nonpainful
associated with sexual activity
clue cells have stippled appearance along outer margin
D(x) amine whiff test
T(x) metronidazole or clindamycin
Chlamydiae
obligate intracellular
elementary body- enters cell via endocytosis, transforms into reticulate body
reticulate body- replicates in cell by fission
Chlamydia trachomatis- causes neonatal and follicular adult conjunctivitis, urethritis, PIDm reactive arthritis
other chlamydia- cause atypical pneumonia via aerosol
T(x): azithromycin, doxycycline
Chlamydia trachomatis Types A, B, C
chronic infection, cause blindness due to follicular conjunctivitis
Africa
Chlamydia trachomatis Types D-K
Urethritis/PID, ectopic pregnancy, neonatal pneumonia with eosinophila, neonatal conjunctivitis (birth canal)
Chlamydia trachomatis Types L1-3
Lymphogranuloma venerum- small, painless ulcers on genitals –> swollen, painful inguinal LN that ulcerate
T(x): doxycycline
Rocky Mountain spotted Fever
Rickettsia rickettsii (tick vector)
Rash starts at wrists and ankles and spreads to trunk, palm and soles
HA, fever, rash
Typhus
Rickettsia
endemic (typhi via flea) epidemic (proazekii via louse)
rash starts central and spreads out sparing palms and soles
Ehrlichiosis
Ehrlichia via tick
monocytes with morulae in cytoplasm
Anaplasmosis
Anaplasma via tick
granulocytes with morulae in cytoplasm
Q fever
Coxiella burnetti
spores via inhalation
HA, cough, influenza like, pneumonia, combo with hepatitis
Mycoplasma pneumoniae
Walking pneumonia (insidious onset, HA, nonproductive cough, patchy or diffuse interstitial infiltrate) military, recruits, prisons, college Cold agglutinins (IgM) T(x): macrolides, doxycycline or fluoroquinolone SJS in children and adolescents
Histoplasmosis
Mississippi and ohio river valleys
macrophage filled with histoplasma
Patatal/tongue ulcers, splenomegaly, pancytopenia
Blastomycosis
Eastern and central US
broad based budding
inflammatory lung disease, disseminates to bone and skin, granulomatous nodules
Coccidioidomycosis
Southwestern US Spherule filled with endospores Disseminates to skin and bone erythema nodosum or multiforme, arthralgias, meningitis Associated with dust exposure
Para coccidioidomycosis
Latin America
budding yeast with captain’s wheel
Males
Tinea
cutaneous fungal infection
Microsporum, Trichophyton, epidermophyton
Branching septate hyphae
pruritis
Tinea capitis
head scalp
LAD, alopecia, scaling
Tinea corporis
on body
enlarging erythematous scaly rings with central clearing
contact with pets
Tinea cruris
inguinal area
Tinea pedis
Interdigital, moccasin distribution or vesicular
Tinea unguium
onchomycosis in nails
Tinea versicolor
Malassezia (yeast like) degrade lipids –> acid –> inhibit tyrosinase –> hypopigmentation, hyperpigmentation or pink patches
spaghetti and meatball appearance
T(x): selenium sulfide, antifungal meds
Candida albicans
Opportunistic fungal infection
pseudohyphae and budding yeast
oral and esophageal thrush in immunocompromised, vulvovaginitis (DM), diaper rash, endocarditis (IV drug users), disseminated candidiasis, mucocutaneous
T(x) oral fluconazole, echinocandins, amphotericin B
Aspergillus fumigatus
Opportunistic fungal infection
Septate hyphae that branch at acute angle
invasive in immunocompromised
aspergillomas post TB infection
Aflotoxins –> hepatocellular carcinoma
T(x) voriconazole or echinocandins
ABPA: hypersensitivity response to Aspergillus in lung mucus. Associated with asthma and CF –> bronchiectasis and eosinophilia