Microbiology Flashcards

1
Q

Staphylococcus characteristics:

A

Gram+
Cocci arranged in clusters
Catalase+

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2
Q

Streptococcus characteristics:

A

Gram+
Chains or pairs of cocci
Catalase-

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3
Q

Lyme disease is caused by:

A

Borrelia burgdorferi

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4
Q

Syphilis is caused by:

A

Treponema pallidum

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5
Q

Q fever is caused by:

A

Coxiella burnetii

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6
Q

Rocky Mountain spotted fever is caused by:

A

Rickettsia rickettsii (transmitted by ticks)

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7
Q

Chlamydiae infection is treated with:

A

Azithromycin or doxycycline (tetracycline for C. pisttaci)

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8
Q

Toxoplasmosis is caused by:

A

Toxoplasma gondii

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9
Q

Chagas disease is caused by:

A

Trypanosoma cruzi

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10
Q

Kaposi sarcoma is caused by:

A

HHV8

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11
Q

The most important global cause of infantile gastroenteritis is:

A

Rotavirus

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12
Q

Name three symptoms of measles:

A

3C’s

Cough
Coryza (rhinitis)
Conjuntivitis

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13
Q

Drugs that inhibit folic acid synthesis (DNA methylation):

A

Sulfonamides (SULFAdiazine)

Trimethoprim

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14
Q

Drugs that inhibit DNA tropoisomerases 2 and 4:

A

Fluoroquinolones (ciproFLOXACIN)

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15
Q

Antibiotic that damages DNA by making free radicals:

A

Metronidazole

Bleomycin has also this mechanism

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16
Q

Antibiotic that inhibits mRNA synthesis (RNA polymerase):

A

Rifampin

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17
Q

Antibiotics that inhibit protein synthesis inhibiting 50s subunit:

A

Macrolides (aziTHROmycin) and Clindamycin: block translocation

Linezolid: blocks initiation

Streptogramims (DalfoPRISTIN, QuinuPRISTIN): block extrusion

Chloramphenicol: blocks peptidyltransferase

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18
Q

Antibiotics that inhibit protein synthesis inhibiting 30s subunit:

A

Aminoglycosides (amikaCIN, gentamiCIN): block 30s binding to Shine Dalgano sequence

Tetracyclines (doxyCYCLINE): block tRNA to bind the ribosome A site

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19
Q

Antibiotics that inhibit cell wall synthesis inhibiting peptidoglycan cross-linking:

A

Penicillins (AmoxiCILIN, piperaCLIN)
Cephalosporins (CEFazolin, CEFtaroline)
Carbapenems (doriPENEM)
Monobactams (aztreonam)

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20
Q

Antibiotics that inhibit cell wall synthesis inhibiting peptidoglycan synthesis:

A

Glycopeptides (bacitraCIN, vancomyCIN)

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21
Q

Cephalosporins with high activity against Pseudomonas:

A

4th generation (cefepime) and 3rd generation (ceftazidime)

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22
Q

5th generation cephalosporins (ceftaroline) spectrum:

A

Broad gram-positive and gram-negative including methicillin resistant staphylococcus aureus

Does not cover Pseudomonas

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23
Q

Antibiotics that treats anaerobic infections above the diaphragm:

A

Clindamycin

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24
Q

Antibiotics that treats anaerobic infections below the diaphragm:

A

Metronidazole

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25
Treatment of Methicillin-resistant Staphylococcus aureus:
Non beta-lactams because mecA decreases PBP affinity for beta lactams ``` Vancomycin Clindamycin Linezolid TMP-SMX Doxycyclin ```
26
Treatment of Vancomycin-Resistant Enterococci:
Linezolid | Streptogramins (quinuPRISTIN)
27
Antibiotics to avoid in pregnancy:
``` Sulfonamides Aminoglycosides Fluoroquinolones Clarithromycin Tetracyclines Ribavirin (antiviral) Griseofulvin (antifungal) Chloramphenicol ``` SAFe Children Take Really Good Care
28
Streptococcus pyogenes (group A streptococci), characteristics, diseases and treatment:
Characteristics: Group A, beta hemolytic and bacitracin sensitive, hyaluronic acid capsule, Protein M Diseases: Pharyngitis, scarlet fever and pyoderma/impetigo. Sequelae: Rheumatic fever and acute glomerulonephritis (+ streptozyme test) Treatment: Beta-lactam or erythromycin
29
Staphylococcus aureus, characteristics, diseases and treatment:
Characteristics: Beta hemolytic, yellow, gram + cocci (clusters), catalase and coagulase + Diseases: Gastroenteritis, endocarditis, abscesses and mastitis, toxic shock, impetigo, pneumonia, surgical infection and osteomyelitis Treatment: Methicillin or vancomycin and fusidic acid if resistant
30
Streptococcus agalactiae (group B streptococci), characteristics, diseases and treatment:
Characteristics: Group B, beta hemolytic, bacitracin resistant and hydrolyzes hippurate Diseases: Neonatal septicemia and meningitis, the meningitis starts a few weeks after birth vs Listeria that starts a few days after birth Treatment: Ampicillin (Listeria) with cefotaxime
31
Streptococcus pneumoniae, characteristics, diseases and treatment:
Characteristics: Alpha!! partially hemolytic, gram+, catalase-, encapsulated, lancet-shaped, diplococcus, bile soluble (unable to be cultured in bile) and optochin sensitive Diseases: Bacterial pneumonia, adult meningitis, otitis media and sinusitis in children Treatment: Penicillin G, start with macrolides!! for community acquired pneumonia. Vancomycin+-rifampin!! if meningitis
32
Viridians streptococcus, characteristics, diseases and treatment:
Characteristics: Alpha hemolytic, bile and optochin resistant, s. sanguinis makes dextrans Diseases: Dental caries and endocarditis Treatment: Penicillin G (with aminoglycoside if endocarditis)
33
Enterococcus characteristics:
Gram+ Catalase- PYR (pyrrolidonyl arylamidase)+ Grows on salt and bile
34
Enterococcus faecalis, characteristics, diseases and treatment:
Characteristics: Gram+, group B, bile esculin+, grows in 6.5% salt Diseases: Urinary, biliary track infections and subacute endocarditis (damaged valve) Treatment: All strains carry some drug resistance
35
Bacillus characteristics:
Gram+ rods Spore-forming Aerobic
36
Bacillus anthracis, characteristics, diseases and treatment:
Characteristics: Large gram+ spore-forming rods with poly-D-glutamate capsule Diseases: Antrax, cutaneous antrax and pulmonary Wool Sorter’s Disease Treatment: Ciprofloxacin or doxycycline
37
Listeria characteristics:
``` Gram+ Nonspore-forming rods Facultative intracellular Tumbling motility!! Cold growth 🍦 ```
38
Mycobacterium characteristics:
Acid fast rods with waxy cell wall | Obligate aerobes
39
Mycobacterium tuberculosis, characteristics, diseases and treatment:
Characteristics: Auramine-rhodamine staining bacilli, acid fast, aerobic, slow growing on Lowenstein-Jensen, produce niacin and heat sensitive catalase Diseases: Tuberculosis Treatment: First 2 months(isoniazid+rifampin+pyrazinamide) Next 4 months (isoniazid+rifampin) + ethambutol or streptomycin
40
Clostridium characteristics:
Gram+ rod Spore forming Anaerobic
41
Neisseria characteristics:
Gram- Diplococci with flattened sides Oxidase+
42
Neisseria meningitidis, characteristics, diseases and treatment:
Characteristics: Gram-, kidney/bean shape cocci in pairs, large capsule, grows on chocolate agar and ferments maltose Diseases: Meningitis and meningococcemia Treatment: Penicillin G or ceftriaxone
43
Neisseria gonorrhoeae, characteristics, diseases and treatment:
Characteristics: Gram- diplococci, culture on Thayer-Martin medium Disease: Gonorrhea Treatment: Ceftriaxone + macrolide
44
Pseudomonas characteristics:
Gram- rod MOTILE (twitching motility thanks to type IV pili and flagellum) Oxidase+, catalase+ Aerobic Make slime glycocalix (avoids phagocytosis) Nonfermenting (grows in McConkey agar but doesn’t turn it pink)
45
Pseudomonas aeruginosa, characteristics, diseases and treatment:
Characteristics: Gram- rods, motile, oxidase+, aerobic, non-fermenting, pyocyanin pigment (blue-green), grape-like odor, MOTILE Diseases: GI track colonization, folliculitis and eye ulcers in normal people. Pneumonia, septicemia, ectyma gangrenosum, malignant otitis externa... on diabetic, burn, neutropenic, chronic granulomatous disease... Polysaccharide capsule forms biofilm so causes chronic pneumonia in CF! Treatment: Antipseudomonal penicillin, 3g cephalosporins, fluoroquinolones
46
Legionella characteristics:
Weakly gram- Requiere cysteine and iron Water organisms
47
Legionella pneumophila, characteristics, diseases and treatment:
Characteristics: Gram- but stain poorly, require cysteine and iron, facultative intracellular Disease: legionnaires disease (pneumonia, hyponatremia, mental confusion and diarrhea with no bug in GI tract) Treatment: Levofloxacin + rifampin in immunodeficiency
48
Bordetella characteristics and main illness:
Gram- small rods Strict aerobes B. Pertussis: Whooping cough, unvaccinated with lymphocytosis and hypoglycemia
49
Francisella characteristics and main illness:
Gram- small cocobacilli Facultative intracellular: needs Th1 and gives type 4 hypersensitivity Zoonotic: 🐇 🦌 🐁 hunters (dermacentor tick) F. Tularensis: tularemia, black ulcer due to tick bite, lymphadenopathy, atypical pneumonia (skinning rabbit), septicemia, diarrhea form eating undercooked rabbit Tto: streptomycin (aminoglycosides)
50
Brucella characteristics and main illness:
Gram- rods Aerobic Zoonotic: 🐂 🐐 farmers, vets, unpasteurized 🥛 in Mexico Facultative intracellular Brucellosis: undulant fever, sweating a lot; can last years
51
Yersinia characteristics and main illness:
Gram- rods Coagulase positive Facultative intracellular Bipolar 🧷 staining Y. Pestis; Plague: Bubonic (fever, buboes-lymphadenopathies-, conjunctivitis) Pneumonic (hemoptisis, chests pain, dyspnea) Zoonotic: southwest dessert flea from🐀🐿 and prairie dogs Y. Enterocolitica: 🐶 mesenteric adenitis +- ileitis (pseudoappendicitis, discarded in CT or sx) Zoonotic: raw pork, unpasteurized 🥛 in clod climates (Y. enteroCOLDitica), unfiltered water or pet feces Tto: aminoglycosides
52
Bartonella characteristics and main illness:
Gram- rods + with warthin-starry Transmission: 🐱 🐶 scratch/bite (in bite you clean and give amoxicillin-clavulanic for pasteurella if stays think bartonella) B. Henselae: papule+ lymphadenopathy+- fever +- headache. Bacillary angiomatosis in AIDS Stellate granulosis with central necrosis in lymph nodes
53
Campylobacter characteristics:
Gram-curved rod with polar flagella | Microaerophilic
54
Campylobacter jejuni, characteristics, diseases and treatment:
Characteristics: Gram- curved motile rods (seagull appearance) microaerophic (grows on Campy or Skirrow’s agar) Disease: self limited enteritis that can lead to guillain-Barré Treatment: Fluoroquinolones, erythromycin
55
Helicobacter pylori, characteristics, diseases and treatment:
Characteristics: Gram- spiral with flagella, microaerophilic, 37deg, oxidase+ Diseases: Chronic gastritis and duodenal ulcers, associated with stomach cancer Treatment: Omeprazole+amoxicillin+clarithromycin
56
Escherichia characteristics:
Gram- rod, enterobacteriaceae, ferments lactose
57
Toxins that increase cAMP
Cholera Antrax E.Coli (M,E) Pertussis
58
Escherichia coli, characteristics, diseases and treatment:
Characteristics: Gram- rod, motile, anaerobic, oxidase-, ferments lactose Diseases: Urinary tract infection, neonatal septicemia and meningitis, septicemia Treatment: Depends, trimethoprim-sulfamethoxazole for traveler’s diarrhea, fluoroquinolones for bloody diarrhea with pus and fever
59
Major encapsulated organisms:
Some Killers Have Pretty Nice Capsules: ``` Strep pneumoniae Klebsiella pneumoniae Haemophilus influenzae Type b Pseudomonas aeruginosa Neisseria meningitidis Cryptococcus neoformans ```
60
Klebsiella characteristics:
Gram- rod, enterobacteriaceae, major capsule
61
Klebsiella pneumoniae, characteristics, diseases and treatment:
Characteristics: Gram-, larger capsule, mucous, lactose-fermenting, oxidase- Diseases: Pneumonia, urinary tract infections, septicemia Treatment: test antibiotic sensitivity
62
Salmonella characteristics:
Gram- rod (enterobacteriaceae), non-lactose fermenter, flagellated and motile (flagella contributes to hematogenous spread)
63
Salmonella typhi, characteristics, diseases and treatment:
Characteristics: Gram- rods, Vi capsule, non-lactose fermenting, produces H2S Disease: Typhoid fever Treatment: Ciprofloxacin or ceftriaxone
64
Yersinia characteristics:
Gram- rod, enterobacteriaceae (oxidase-)
65
Enterobacteriaceae characteristics:
Gram- rods Non-sporing Ferment glucose Reduce nitrate to nitrite
66
Enterobacteriaceae bacteria with clinical significance:
Highly pathogenic: Yersinia Salmonella Shigella ``` Facultatively pathogenic: E. Coli Klebsiella Enterobacter Proteus Serratia Citrobacter ```
67
Proteus characteristics:
Gram- rod (enterobacteriaceae), with flagella, non-lactose fermenting, urease+, oxidase - Alkalinizes the urine! and smells like ammonia
68
Vibrio characteristics:
Gram- curved rod with polar flagella, oxidase+
69
Haemophilus characteristics:
PLEOMORPHIC Gram NEGATIVE COCCOBACILLI!!! that requires growth factors X (hematin) and V (nicotinamide) so grows in chocolate agar or co-culture with S. Aureus
70
Haemophilus influenzae, characteristics, diseases and treatment:
Characteristics: Gram- rods, requires factors X and V (chocolate agar) Diseases: Meningitis in unvaccinated, otitis media, bronchitis, pneumonia, epiglottitis, conjuntivitis Treatment: Cefotaxime or ceftriaxone for meningitis (rifampin for prophylaxis!!)
71
Treponema characteristics and others of that type:
Spirochetes (spiral, axial filament) poor gram stain (Gram-but very thin to see) Other spirochetes: Borrelia and Leptospira
72
Treponema pallidum, characteristics, diseases and treatment:
Characteristics: Poor gram stain (gram-), thin spirochete, obligate pathogen Disease: Syphilis Treatment: Penicillin G
73
Borrelia characteristics:
Large spirochetes, gram- and microaerophilic
74
Borrelia burgdorferi, characteristics, diseases and treatment:
Characteristics: Poorly seen in gram stain, spirochete Disease: Lyme disease Primary treatment: Doxycycline, amoxicillin or azithromycin, clarithromycin
75
Rickettsia characteristics and diseases:
Obligate intracellular, gram- ``` Rocky Mountain spotted fever (rickettsii; tick; flu like + centripetal rash) Typhus epidemic (prowazekii; louse) endemic (typhi; flea) ```
76
Chlamydia characteristics:
Obligate intracellular, not seen in gram but you can see iodine or giemsa-staining intraepithelial inclusion bodies, cannot make ATP, cell wall lacks muramic acid
77
Chlamydia trachomatis, characteristics, diseases and treatment:
Characteristics: Obligate intracellular, cannot make ATP, found in metabolically active cells, not seen in gram, no muramic acid Diseases: STD, lymphogranuloma venereum, trachoma Primary treatment: Doxycycline or azithromycin
78
Mycoplasma characteristics:
Smallest extracellular bacteria, no cell wall, sterols in membrane
79
Mycoplasma pneumoniae, characteristics, diseases and treatment:
Characteristics: extracellular, no cell wall, not seen in gram, requires colesterol in vitro culture! (Eaton agar) Disease: Pneumonia Primary treatment: macrolides
80
Gram+ bacteria are stained in:
Purple/blue
81
Gram- bacteria are stained in:
Red/pink
82
Antiphagocytic bacterial components:
Capsule Pili of Neisseria gonorrhoeae M-protein of Streptococcus pyogenes A proteins of Staphylococcus aureus
83
Mechanism of action of both diphtheria toxin and pseudomonas exotoxin A:
Inhibition of protein synthesis trough inactivation of EF2
84
Gram- diplococcus, oxidase+ and does not ferment lactose
Neisseria
85
Gram+ coccus, catalase+ and coagulase-
Staphylococcus saprophyticus (UTI in newly active adolescent women)
86
Gram+ coccus, optochin-resistant and catalase-
Steptococcus viridians (subacute infective endocarditis and caries)
87
The oxidation-reduction requirement of anaerobes is:
Low
88
Filarial worm maturing in the lymphatics and causing elephantiasis
Wucheria bancrofti
89
Carrier of epidemic typhus and Trench Fever
Pediculus humanus
90
Two causative agents of elephantiasis are:
Wuchereria | Brugia
91
What do reduviid bugs transfer? How does it present?
American trypanosomiasis or Chagas disease Periorbital edema+ myocarditis+ meningoencephalitis if acute dilation of organs if chronic
92
What do Tsetse flies transfer? How does it present?
African trypanosomiasis or sleeping sickness Axially lymph node+ fever + flagellated trypomastigotes in blood or CSF
93
HPV 6 and 11 cause and are considered:
Anogenital condyloma acuminatun and laryngeal papillomas Considered benign
94
HPV 16, 18 and 31 cause and are considered:
Cervical intraepithelial neoplasia Considered malignant: most common cause of neoplasia
95
The leading cause of deaths AIDS is:
Pneumonia
96
Viral vaccines types and examples:
Recombinant: HepB and HPV Killed: Rest In Peace Always (Rabies!!! Influenza, Polio Salk, HepA) Live not attenuated: Adenovirus ``` Live attenuated: All the rest Ex: MMR Mumps Measles or rubeola Rubella or german measles Rotavirus only live attenuated given in 👦 ```
97
The window period in hepatitis is:
Between the end of the detectable HBsAg and the beginning of antibody to HBsAg HBc antibody and HBeAg are present (HBcAg is not detectable in plasma)
98
Indicates carrier state in hepatitis:
HBsAg the past 6 months
99
Indicates viral production in hepatitis:
HbeAg
100
Grows in alkaline medium and the isolate is oxidase+
Vibrio cholerae
101
Owl’s eyes are and are caused by:
Basophilic intranuclear inclusions with smaller eosinophilic cytoplasmatic inclusion bodies Caused by Cytomegalovirus (herpes virus, dsDNA)
102
Bacteria that require cysteine for growth:
Four Sisters Ella of the Cysteine Chapel: Francisella Legionella Brucella Pasteurella
103
Rheumatic fever occurs only after:
Pharyngitis with Group A streptococcus (s. pyogenes) - Not after Group C streptococcus - Not after group A skin infections
104
A key characteristic of Neisseria is that:
Is a facultative intracellular organism often seen within neutrophils
105
Mechanism of toxicity related to gram- bacteria:
EnDotoxin release
106
Achalasia, megacolon or megaureter could be caused by:
Trypanosoma cruzi (Chagas disease)
107
Common bacteria isolated in intraabdominal infections:
Bacteroides fragilis | Escherichia coli
108
Species that can cause disease with little amount of organisms:
``` Giardia lamblia (1 organism) Entamoeba histolytica (1 organism) Shigella (10-200 organisms) Campylobacter jejuni (500 organisms) Clostridium perfringens (500 organisms) ```
109
Vibrio cholerae, characteristics, diseases and treatment:
Characteristics: Gram-, oxidase+, comma-shaped rod, grows on alkaline but not on acidic media Disease: cholera Treatment: fluids, electrolytes and doxycycline/ciprofloxacin
110
Bugs with eXotoxins that inhibit translation or protein synthesis:
Corynebacterium diphtheriae | Pseudomona aeruginosa
111
Bugs with eXotoxins that increase fluid secretion:
Enterotoxigenic E. coli Bacillus anthracis Vibrio cholerae
112
Bugs with eXotoxins that inhibit release of neurotransmitters:
``` Clostridium tetani Clostridium botulinum (blocks fusion of Ach vesicles to the mb cleaving SNAP-25, synaptobrevin and syntaxin) ```
113
Bugs with eXotoxins that lyse cell membranes:
Clostridium perfringens Staphylococcus aureus (both have alpha toxin)
114
Bugs with eXotoxins that are superantigens causing shock:
Staphylococcus aureus | Streptococcus pyogenes
115
Corynebacterium diphtheriae, characteristics, diseases and treatment:
Characteristics: Gram+ rod, non-motile, unencapsulated, clustered resembling letters, cytoplasmic granules that stain with aniline dyes, cultured on cysteine-tellurite agar Disease: diphtheria Treatment: antitoxin (passive immunization), erythromycin, DTP (active immunization)
116
Classic clinical manifestations of congenital rubella:
Congenital cataracts Sensory-neural deafness Patent ductus arteriosus, pulmonary stenosis Blue berry muffin baby
117
Examples of heterophile antibody tests:
Monospot test for Epstein-Bar virus Weil-Felix test for Rickettsia VDRL for syphilis
118
A frequent cause of anaerobic lung abscesses is:
Oral bacterial flora (specially in elderly, alcoholic, demetria and depressed cough)
119
Most common cause of self-limited EXTERNAL otitis:
Pseudomonas aeruginosa (but it can become malignant and cause osteomyelitis of temporomandibular joint and base of the skull in diabetics) Otitis media is due to: S.pneumo Haemophilus Moraxella
120
Molluscum contagiosum genome:
DNA, double-stranded, linear, enveloped
121
Poliovirus genome:
RNA, naked, single-stranded positive, part of the picornavirus (PERCH: polio, echo, rhino, coxakie, hep A)
122
Schistosoma haematobium is a risk factor of:
Bladder disease (including cancer)
123
Helicobacter pylori eradication treatment:
Triple therapy: Amoxicillin (Metronidazole if allergy) Clarithromycin PPI ``` Quadruple therapy: Metronidazole Tetracycline Bismuth subsalicylate PPI ```
124
Gram-, non-lactose fermenting, oxidase+ rod
Pseudomonas aeruginosa
125
Causative agents of congenital infections:
TORCH: ``` Toxoplasmosis Other (syphilis) Rubella Cytomegalovirus Herpes simplex virus ```
126
Name 4 bacteria that require cysteine:
Francisella Legionella Brucella Pasteurella
127
Tumbling motility is associated with:
Listeria monocytogenes
128
Lactose fermenting, gram- bacillus that generates jelly sputum, tissue necrosis and abscess formation:
Klebsiella pneumoniae (encapsulated)
129
How can we identity a lactose fermenting bug?
It turns MacConkey agar pink
130
C. tetani’s exotoxin blocks the release of:
GABA and glycine
131
C. botulinum exotoxin blocks the release of:
Ach
132
Pseudomona and diphtheria toxin mechanism:
ADP-ribosilate and inactivate elongation factor 2, so block translation
133
Only DNA viruses that can replicate on the cytoplasm:
Poxviridae (smallpox and molluscum contagiosum)
134
Only RNA virus type that needs the nucleus to replicate:
Orthomyxovirus (influenza)
135
Organism that causes LOBAR pneumonia after aspiration
Klebsiella pneumoniae
136
The presence of cord factor in M. Tuberculosis correlates with:
Virulence
137
Mayor virulence factor and vaccine target for S. Pneumoniae:
Polysaccharide!!!! capsule
138
Laboratory abnormality very specific of legionella in pneumonia:
Hyponatremia
139
Cold agglutinin formation is characteristic of which microorganisms?
Mycoplasma pneumoniae
140
What is the most common cause of aseptic meningitis?
Enterovirus
141
Major virulence factor for C. difficile:
Toxin A: enteroroxic—>diarrhea Toxin B: cytotoxic—>necrosis They disrupt the actin cytoskeletal structure and intracellular signaling
142
What are the most important pathogens in bacterial meningitis?
Capsules
143
Main transmission of Campylobacter jejuni:
``` Undercooked poultry Domesticated animals (kennels) ```
144
What difference Staphylococcus aureus form the other staphylococci?
It is coagulase positive and the others (s. epidermidis, s.saprophyticus) are coagulase negative
145
Most frequent cause of meningitis in neonates:
B strep agalactiae (vaginal canal) E. coli (vaginal canal) Listeria: crosses the placenta and causes granulomatosis infantiseptica The meningitis from B strep starts a few weeks after birth vs Listeria that starts a few days after birth
146
Most frequent cause of meningitis in children and teenagers:
N. meningitidis (trough nose)
147
Most frequent cause of meningitis in adults/elderly:
S. pneumoniae
148
Most frequent cause of meningitis in non vaccinated kid:
H. influenza
149
Gram - oxidase + curved rod is:
Campylobacter
150
Gram - oxidase - nonmotile non-lactose fermenter rod is:
Shigella
151
Gram - oxidase - very motile rod that produces H2S gas is:
Salmonella
152
If they tell you gram-negative, oxidase positive nonfermenting bacillus think about: Other characteristics:
Pseudomona aeruginosa | Blue-green pigments and grape-like odor
153
If they tell you gram-negative, pleomorphic rod think about: | Other characteristics:
Haemophilus influenzae | Requires factors X and V
154
What is the major protection factor of C. difficile?
Ability to form spores when there is high antibiotic concentration
155
Transformation definition:
Uptake of naked DNA from the environment. They will refer to lysate (note that supernatant is just the media, does not contain DNA)
156
Conjugation definition:
Gene transfer from one bacteria to another trough direct cell-to-cell contact, when you see a transfer of a big drug resistance plasmid think conjugation
157
Transduction definition:
Transfer of DNA by a phage vector (bacteriophage) Generalized: lytic phage, package problem, can't keep his cycle and can't cause productive infection, efficient, different new traits for different bacteria, just ONE phage is able to transduce Specialized: lysogenic phage, just flanking genes transmitted so less efficient, same traits for different bacteria, all phages are able to trasduce, ABCD'S toxins: group A stept, Botulinum, Cholera, Diphtheria, Shiga, Salmonella O
158
Bacteria that can bind fibrinogen and IgG:
S. aureus | Because of it’s coagulase activity it binds fibrinogen and because of prot A it binds IgG
159
What fungi is endemic form the east coast? | Form characteristics:
Blastomyces Forms broad based budding yeast in tissue. Alone
160
What fungi is endemic from California? | Form characteristics:
Coccidioidomyces Archeology, earthquakes Forms arthroconium in soil and biggest SPHERULES and endoSPORES in tissue
161
What fungi is endemic from Mississippi and Ohio? | Form characteristics:
Histoplasma Spelunking (cave exploring): 🐦 🦇 💩 Forms tuberculated macroconidia and microconidia in culture and intracellular narrow based budding yeast inside the macrophages. Histoplasma hides within macrophages, smallest
162
What fungi is endemic from Latin America? | Form characteristics:
Para-coccidioidomyces Big thick yeast with multiple buds, Capitain's wheel
163
Name gram + cocci species:
Staphylococcus Streptococcus Enterococcus
164
Name gram + rod species:
Spore formers N’ CLAM ``` Bacillus Clostridium Nocardia Corynebacterium Listeria Actinomyces Mycobacterium ```
165
Name gram - cocci species:
Neisseria Moraxella!!! Veillonella
166
How do I differentiate between bacillus anthracis and clostridium tetani on culture?
Both are gram + spore forming rods Bacillus is aerobic and clostridium is anaerobic
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Which organism presents with stormy fermentation in milk media and double zone of hemolysis?
Clostridium perfringens
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Pathogens associated to colon ca:
``` Clostridium septicum (sepsis) Steptococcus group D!! Gallolyticus -bovis- (endocarditis) ```
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How do I differentiate between actinomyces and nocardia on culture? How do I treat them?
Both are gram + branching rods Actinomyces is anaerobic and nocardia is aerobic and partially stains with acid fast Actinomyces is treated with penicillin and nocardia with TMP-SMX
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Thayler Martin (a variant of chocolate agar) is used to culture which organism? Which antibiotics contains?
Neisseria | It has antibiotics to select neisseria (Very Typically Cultures Neisseria: Vanco, Trimethoprim, Colistin and Nystatin)
171
What do we use to confirm syphilis in the different phases?
Primary: biopsy of the lesion and dark field microscopy, FTA-ABS or MNSTP Secondary: non-treponemal RPR o VDRL (look for abs that bind to cardiolipin; screening then you do treponemal) Tertiary: treponemal FTA-ABS or MNSTP
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Tests that indicate that the ineffective organism has a capsule: What organism have a capsule?
Quellung reaction (swelling) Latex particle agglutination India ink Think meningitis. Some Killers Have Pretty Nice Big And Elaborated Capsules: Strep. Pneumo, Klebsiella, Haemophilus, Pseudomona, Neisseria meningitidis, Bacillus, Strep. Agalactiae, E. Coli (K1 neonatal disease), Crypto
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What do we use to diagnose Lyme?
ELISA (a lot of false negatives) then, Western blot
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Classic clinical manifestations of congenital toxoplasmosis:
1st trimester: Microcephaly Intracranial calcifications (periventricular en CMV) Hydrocephalus 2nd trimester: Chorioretinitis Strabismus
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Chocolate agar is used to culture:
``` Neisseria Haemophilus influenzae (needs X and V) ```
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Charcoal yeast extract agar is used to culture:
The one that need cysteine and iron: Legionella (causes hyponatremia) Brucella Francisella Pasteurella
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Most common cause of meningitis in unvaccinated children:
Haemophilus influenzae
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What are common causes of bloody diarrhea outbreak at a day care?
Shigella (leukocytosis) Others: EHEC (no leukocytosis because non invasive) Yersinia enterocolitica (leukocytosis)
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Surfactant-rich exudate and SILVER-staining cysts in lung biopsy indicates:
Pneumocystis jirovecii
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Name important urease positive organisms:
``` KiSS PUNCH Klebsiella Staphylococcus epidermidis Staphylococcus saprophyticus Proteus Ureaplasma Nocardia Cryptococcus Helicobacter ```
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B12 deficiency after eating raw fish:
Diphyllobothirium latum
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Name examples of lysogenic conversion:
``` CO-BEDS (share beds) Cholera toxin O antigen of salmonella Botulinum toxin Erythrogenic toxin of S. pyogenes Diphtheria toxin Shiga toxin ```
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Predominant cells in CSF of meningitis depending on the agent:
Bacteria: neutrophils=PNMs | Virus, fungi or mycobacterium: lymphocytes (fungi and mycobacterium will have low glucose)
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Bugs that can be used in bioterrorism and how to diagnose:
``` Yersinia pestis: 🧷 bipolar staining The rest serology Francisella Brucella Bacillus anthracis Coxiella Smallpox ```
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Intracellular organisms:
Obligate: Stay inside when it’s Really CHilly and COld. Hard to grow in the lab Rickettsia Chlamydia Coxiella ``` Facultative: Some Nasty Bugs May Live FacultativeLY Salmonella typhi Neisseria gonorrheae, Nocardia Brucella Mycobacterium LISTERIA Francisella LEGIONELLA Yersinia ``` Toxoplasma Leishmania Babesia, plasmodium Criptococcus Histoplasma Require Th1, INFgamma, IL2 (activates CD8) and you make granulomas
186
Which illnesses can be transmitted by dermacentor tick:
Rocky Mountain: rickettsia Tularemia: francisella!!! Colorado tick!!! fever: Colorado tick fever virus
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Pathology and complications associated with Entamoeba histolytica:
Bloody diarrhea with inverted flask-shaped deep ulcers. Can lead to fulminant colitis and liver abscesses
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Thiosulfate citrate bile salt sucrose (TCBS) medium is used to culture:
Vibrio
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Name important oxidase positive bacteria:
``` Pseudomona Vibrio Neisseria Helicobacter Campylobacter ```
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Name the three dermatophytic fungi:
Tricophyton: hair, nails, skin Microsporum: hair, skin (fluorescent) Epidermophytum: nails, skin
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Pathology and staining associated with Malassezia furfur:
Tinea versicor: hypopigmented spots KOH shows🍝 yeast clusters with curved septate hyphae
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Causative organism and hallmarks of cat scratch disease:
Bartonella henselae Papule+- lymphadenopathy (biopsy: stellate ⭐️ granulomas) +- bacillary angiomatosis (nodular lesion following blood vessel distribution) DD. Pasteurella. Pasteurella is due to bites and healed with amoxi-clavulanic
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Acid fast oocysts in stools indicate: | How does it cause the symptoms?
Cryptosporidium Causes diarrhea in AIDS due to intracellular multiplication within intestinal epithelium
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Which illnesses can be transmitted by the ixodes scapularis tick:
Lyme: borrelia Babesiosis (spiky fever + maltese cross on RBSs): babesia Human granulocytic anaplasmosis (flu-like + low leukocytes + low platelets + morulae inside granulocytes): Anaplasma
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Bugs associated with raw oysters 🦪?
``` Hep A Vibrio parahaemolyticus (watery diarrhea) Vibrio vulnificus (watery diarrhea +-septicemia +-cellulitis ```
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Candida morphology:
At 37deg: germ tubes, germinating hyphae Also: Pseudohyphae (constricted at septi) Oval budding yeasts True hyphae
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What antibodies need to be used to detect neonatal infection?
IgM (1st produced) or IgA (mucosa) IgG crosses the placenta
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What parasite is associated with liver hydatid cysts?
Echinococcus granulosus DD. With Entamoeba that causes liver abscess
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What parasite is associated with pigmented gallstones?
Clonorchis sinensis | Can evolve to cholangiocarcinoma
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What parasite is associated with brain cysts?
Taenia solium (neurocysticercosis)
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Pneumocystis morphology:
Extracellular atypical | Dx: Cysts in silver (methenamine) staining of the lavage
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Segmented viruses:
``` ROBA Reovirus (Rotavirus) Orthomyxovirus (Influenza) Bunyavirus (Hantavirus) Arenavirus (LCMV, Lassa fever) ``` If they are talking about any of those viruses think REASSORTMENT 'Robar en un resort'
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What parasite is associated with acid-fast oocysts in stools?
Cryptosporidium parvum
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Bacterial vaccines types and examples:
Conjugated (conjugate the meninges) ->T activation: Neisseria meningitidis Strep pneumoniae 13 serotypes 👦 Haemophilus influenza B Polisaccharide: Strep pneumoniae 23 serotypes 👴 Toxoid: DTaP: diphtheria, tetanus, acellular pertussis
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Heterophile negative mononucleosis:
CMV (can be transmitted by blood transfusion, less risk if irradiated) Toxoplasmosis HIV HVS 6
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What is the difference between gram + and gram -?
Gram - have an outer membrane covering the peptidoglycan
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Which bug causes hyponatremia?
Legionella
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Differential diagnosis of vaginal discharge:
Gardnerella: gray thin and odorous, clue cells, +Whiff, high pH, endogenous→ metronidazole Trichomona: frothy green-yellow, trophozoite with corkscrew motility, STD→ metronidazole Candida: cottage cheese, pseudohyphae, germ tubes→, topical or oral azole
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Differential diagnosis of genital lesions and treatment:
Treponema pallidum, syphilis: painless chancre and painless lymphadenopathy. Micro: corkscrew. Tto: Penicillin 0 Klebsiella granulomatis: granuloma inguinale or donovanosis: painless nodule that ulcerates (beefy red) and can bleed (PSEUDObubon) WITHOUT lymphadenopathy. In Africa. Giemsa, intraCYTOPLASMATIC bipolar ~🧷 staining. Tto: doxy/macrolide 0 Clamydia trachomatis (L): painless ulcers→ tender painful lymphadenopathies that ulcerate (buboes) lymphogranuloma venereum. In Latin America and Africa. Micro: Giemsa, intraCYTOPLASMATIC. Tto: Doxy 1 Haemophilus ducreyi: chancrOID, deep purulent painful ulcers (papule→ pustule→ ulcer→ BLEEDING) with ragged borders, GRAY base and SUPPURATIVE inguinal lymphadenitis. Micro: clumping, school of fish. Tto: ceftriaxone/macrolide 2 HSV2: superficial ITCHY painful vesicles or ulcers w erythematous base (but do not bleed) and tender lymphadenopathy (but not suppurative) ± discharge ± constitutional symptoms (FEVER, malaise). Heal in 10 days. Easier to get AIDS. Micro: intraNUCELAR and multinucleated cells. Tto: acyclovir 2
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Antibodies against nonstructural protein 1 indicate:
Dengue, transmitted by the Acedes mosquito
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Where does JC virus remains latent?
In kidney and lymphoid organs
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Bugs associated with hemochromatosis:
Listeria Yersinia enterocolitica Vibrio vulnificus
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Which drugs can be a RF for oral thrush? How can you prevent it?
Inhaled corticosteroids for asthma Prevent it by washing the mouth with water after use
214
Which parasites are transmitted by flies and what is their treatment?
Tsetse fly: trypanosoma brucei->suramin, melarsoprol Sandfly: leishmania->sodium stibogluconate (ampho B for visceral) Black fly: onchocerca->ivermectin Deer/horse/mango fly: loa loa->diethylcarbamazine
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Which are the natural transformers? Bacteria that tend to transfer DNA by transformation:
``` They have at least the enz. RecA for transformation Think meningitis: S. Pneumoniae H. Influenza type B Neisseria species Those 3 also have IgA protease ``` Other natural transformers: Bacillus species H. Pylori
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Organisms associated with bites:
Cat/Dog bite: Pasteurella multocida. Treat with amoxiclavulanic If does not heal: Human: Eikenella corrodens (Cepha 3rd) Dog: Capnocytophaga canimorsus (Cepha 3rd) Cat scratch: Bartonella henselae (azithromycin)
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Which are the dimorphic yeasts?
``` Body Heat Changes Shape: Blastomyces Histoplasma Coccidioidomyces Sporothrix ``` Mold in the cold and yeast in the beast (yeast more imp for dx)
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What can give you chronic meningitis?
M. tuberculosis Syphilis Brucella Fungi
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How can pseudomonas cause chronic pneumonia even if they are treated?
Polysaccharide capsule forms biofilm so causes chronic pneumonia in CF!
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How do you treat cestodes (tapeworms) and trematodes (flukes)? How does it work?
Praziquantel (albendazole for echinococcus) | Increases permeability of cell mb. to Ca
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How do you treat menatodes (roundworms)? | How does it work?
Bendazoles (but ivermectin for onchocerca and diethylcarbamazine for loa loa and wuchereria) Bind to β-tubulin and inhibit its assembly into microtubules
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Which bugs need to be cultured in live tissue?
Mycobacterium leprae | Pneumocystis jirovecii
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What is the capsule composition of S. pyogenes, S. pneumonia, H. influenza, Pseudomona, B. anthracis and Salmonella?
S. pyogenes: Hyaluronic acid S. pneumonia: Polysaccharide H. influenza: Polysaccharide, polyribosylribitol phosphate!!! Pseudomona: Polysaccharide that can form biofilm B. anthracis: Polypeptide poly D!!!!-glutamate Salmonella typhi: Vi
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Which pathogenic factors get transferred by specialized transduction:
A lysogenic phage transfer flanking DNA; ALSO CALLED LYSOGENIC CONVERSION ``` ABCD'S tOxins: Group A stept (pyogenes) exotoxins A-C Botulinum toxin Cholera toxin Diphtheria toxin (presence tested by ELEK) Shiga toxin Salmonella O antiges ```
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What is the ELEK test? what does it test?
Presence of diphtheria toxin. If they are crossing lines there is toxin! Diphtheria toxin is acquired by a lysogenic/temperate phage!!!! Diphtheria toxin ADP-ribosilates and inactivates elongation factor 2 blocking translation
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How do you treat community acquired pneumonia in adults?
Macrolides or doxycycline
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Histological hallmarks of HIV encephalopathy and progressive multifocal leukoencephalopathy:
HIV: microglial nodules, multinucleate giant cells, p24+ cells JC: multifocal non-enhancing lesions, demyelination in white matter, intranuclear inclusions
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Which bacteria causes lymphocytosis and why?
Bordetella pertussis (produces lymphocytosis promoting factor that prevents lymphocytes to enter the lymph node)
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What are the different causes of endocarditis?
Acute IV drugs: Staph aureus Subacute dentist: Strept viridians Subacute urologist: Enterococci Subacute prostatic valve or IV drugs: Staph epidermidis Subacute gram negative: HACEK (Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella)
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Name all the spirochetes:
Borrelia (the biggest and the only one that can be seen in Giemsa) Leptospira Treponema
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Infections associated with 🐦 and their treatments:
Both cause pneumonia C. psittaci; tetracycline Histoplasma; fluconazole Flaccid paralysis West Nile Meningitis in HIV Cryptococcus (pigeons)
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Which fungal infection can present as lobar consolidation?
Aspergillus
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How do hep C and plasmodium enter the cell?
CD81 is used by hep C and plasmodium to enter and infect the cell
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HACEK examples, presentation and treatment:
``` Haemophilus Aggregatibacter Cardiobacterium Eikenella Kingella ``` Endocarditis in normal patient with a new murmur; very mild symptoms so hard to dx; they are mouth flora (maybe got it by punching someone on the face) Two: 3rd cefalosporin
235
Define MIC and MBC:
MIC: minimal inhibitory concentration (color change in test tube) MBC: minimal bactericidal concentration needed for immunocompromised (bacteria in agar)
236
Name 4 bacteria that secrete IgA protease:
Neisseria meningitidis and gonorrhoeae Stept pneumo Haemophilus influenzae It cleaves IgA at the hinge region
237
How do you get rid of proteins, spores, RNA and lipid bilayer envelopes?
Proteins, naked viruses and spores: autoclave and chlorine-based solutions (such as bleach -sodium hypochlorite-) RNA and DNA: ionizing Radiation (radiotherapy causes DNA double strand breaks and free radicals) DNA: aldehydes and iodine Lipid bilayer envelope, destroy cell membranes: alcohol, heating at 60 deg for 30 min Other mechanism: Destroy intracelular constituents: chlorhexidine Cross-link DNA and proteins: aldehydes Halogenation of DNA: iodine Free radicals formation: hydrogen peroxide
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Which is the most common cause of non-purulent celulitis? and of purulent celulitis?
Non-purulent: Strep pyogenes | Purulent: Staph aureus
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Fungi that are budding yeasts:
Candida at 20 deg Cyptococcus, narrow Blastomyces, broad Paracoccidioides
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Acid fast stains: other names, color of acid-fast positive organism and change of color:
Other names: Kinyoun, Fite and Ziehl-Neelsen Acid fast organism look pink Carbon Fuchsin enters the cell at high temperature making all pink, then you go back to normal temperature and add Methylene Blue, acid fast will remain pink and the rest will become blue
241
Which illness is associated with serratia osteomyelitis?
Chronic granulomatous disease
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Bugs for which the most important mechanism for presentation is molecular mimicry:
Chagas Lyme GAS=S. pyogenes (rheumatic fever)
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Big joint artritis that moves:
Lyme Rheumatic fever Gonorrhea
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Which pneumonias can form and abscesses?
Anaerobes Staph aureus Klebsiella Because they are caused by aspiration abscesses are normally on the lower lobes of the right lung!
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Main virulence factors of S.pyogenes and S.aureus:
S. pyogenes: Protein M (binds to factor H and prevents opsonization and complement destruction) S. aureus: Protein A (binds Fc of IgG and prevents opsonization)
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Bugs that are observed in Giemsa stain:
``` Rickettsia Chlamydia Trypanosomes Plasmodium Borrelia Helicobacter ``` RICKy got CHLAMYDIA as he TRIed to PLease the BORred Hot Geisha
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Genetic causes of genetic shift and drift:
Drift: point mutation; yearly mutations human to human Shift: genetic reassortment; species to species
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Define the following mechanisms of viral interaction: Recombination, Phenotypic mixing, Reassortment and Interference
Recombination: gene exchange between two dsDNA viruses with homologous regions Phenotypic mixing: genes are form one strain and capsid/envelope from another Reassortment: exchange of whole genome segments, just happens in segmented viruses Interference: one virus stops another virus that is infecting the same cell
249
What is the characteristic appearance of the chickenpox rash?
dewDROP on a rose petal
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Peeling erythematous rash resembling a sunburm is characteristic of which infection?
Desquamating rash in toxic shock syndrome
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Schüffner's dots are characteristic of which malaria species? What are they?
P. vivax (maybe also ovale) | Schüffner stippling: red granules inside the cytoplasm of big RBCs
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Main virulence factors of M. tuberculosis
Sulfatides: inhibit phagosome-lysosome fusion. The 1st week of exposure to TB in healthy patient there is intracellular bacteria proliferation Cord factor=trehalose dimycolate: paralyzes the host cells, induces TNFα release and leads to granulomas. Correlates with virulence. Tuberculin= surface protein: leads to granulomas
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DD. salt tolerant gram positive cocci:
Enterococcus | Staphylococcus
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Which is the main pathogenic factor of Giardia?
Ventral sucking disk (can be identified because it has a falling leaf motility)
255
Neonatal conjuntivitis causes and timing:
Gonococcal conjuntivitis. In 2 days old. Prevented with erythromycin prophylaxis Chlamydia conjuntivitis. In 2 weeks old. Chlamydia is calm and goes slow!
256
Where does Parvovirus B19 bind?
P antigen in RBCs also called globoside
257
DD between HSV's gingivomastitis and coxakie's hand foot and mouth disease:
Both have vesicular lesions but HSV involves gums and hard palate and coxakie does not
258
What protects you from influenza virus infection after previous exposure or immunization?
Serum antibodies against hemagglutinin, prevent the virus from entering the host cells
259
Live cycle of plasmodium:
SSant Thomas Medical Group: ``` Sporozoite (enters the body) Schizont (infect liver and then rupture) Trophozoite (infects RBCs) Merozoites (free in blood and cause fever) Gametocyte (in mosquito) ```
260
What defines viral tissue tropism?
Surface glycoproteins
261
Cause of apendicitis:
E. coli
262
DD for epiglottis, croup and whooping cough:
H. influenza type B: epiglottis, tripod position, inspiratory stridor, thumb sign👍, unvaccinated Parainfluenza: croup, laryngitis and tracheal edema of the SUBGLOTTIC LARYNX below the vocal folds, barking cough, inspiratory stridor, steeple sign )( unvaccinated Pertussis: whooping COUGH, inspiratory whoop!!, vomiting, long illness with phases, lymphocytosis, unvaccinated, 3 toxins (Adenylate cyclase, Gi, tracheal)
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Phase variation:
Method for dealing with rapidly varying ENVIRONMENTS without requiring random mutation. It involves the variation of protein expression within different parts of a bacterial population
264
What is the gram, shape and Os requirement of lactobacillus?
Gram positive! anaerabic rod. The vagina is positive!
265
How do you confirm PCP?
Direct fluorescent antibody test
266
DD of roseola, rubella and measles rashes:
Roseola: maculopapular from trunk to face, postauricular lymphadenopathy Rubella: maculopapular rash from the head down, postauricular lymphadenopathy, forheimers spots on the soft palate Measles (rubeola): maculopapular rash from the head down, koplik spots on buccal mucosa
267
What is the only positive marker during window period?
Hep B core antibody
268
Hoe does cryptosporidium cause watery diarrhea?
Multiplies intracellularly, within the intestinal epithelium
269
By which mechanism bacteria exchange multi-drug resistant plasmids? And single drug resistant genes?
Multi drug: transposition | Single drug: Conjugation, takes longer time and is less efficient
270
Which organism grows on fried egg colonies?
Mycoplasma
271
Which organism grows mucoid gray-white colonies?
Klebsiella | It also turns 'eosin methylene blue agar' purple because acidifies the medium
272
What do the different HIV genes encode for?
gag: p24 (inner capsid membrane, dx) and p17 (outer membrane) pol: reverse transcriptase, integrase, protease env: envelop made of gp160 that divides into gp120 (antigenic variation, attaches, maraviroc) and gp41 (fusion, enfuvirtide) tat: transcription! regulatory protein, to initiate HIV transcription rev: transport! regulatory protein that allows virus to progress nef: decreases CD4s and MHCI
273
Which animals are the natural reservoir for lyme?
Mice (larvae) and deer (adult) The white-footed mouse is the host of Ixodes tick larvae and the white-tailed deer is the obligatory host of adult Ixodes ticks
274
What is the main difference in presentation of hepatitis B in adults vs neonates?
Transaminases do not go up a lot in babies because they do not have a lot of CD8+ that are the ones that cause the cell damage, they also do not have symptoms for the same reason but the hepatitis very frequently becomes chronic
275
How do you get resistance to aminoglycosides?
By enzymes transferases that inactivate the antibiotic via phosphorylation, acetylation, or adenylation
276
How do you differentiate between gonococcal and chlamydial conjunctivitis?
Gonococcal conjunctivitis: baby is 2 days old. Prophylaxis: erythromycin drops Chlamydia conjunctivitis: baby is 1-2 weeks old, watery discharge. Tto: oral erythromycin
277
What is used to diagnose strep on a patient that comes with pharyngitis?
Swab immunoassay for strep group A antigens!
278
Which are the only 3 DNA and the 3 RNA viruses with circular genomes?
DNA: Papilloma, Polyoma and Hepadna (gets envelope form RER) RNA: BAD; Bunya, Arena, Delta
279
Why MMR (measles, mumps, rubella) need to be a live vaccine
They form syncitia, you need a vigorous cell mediated response to kill them