Microbiology Flashcards
Staphylococcus characteristics:
Gram+
Cocci arranged in clusters
Catalase+
Streptococcus characteristics:
Gram+
Chains or pairs of cocci
Catalase-
Lyme disease is caused by:
Borrelia burgdorferi
Syphilis is caused by:
Treponema pallidum
Q fever is caused by:
Coxiella burnetii
Rocky Mountain spotted fever is caused by:
Rickettsia rickettsii (transmitted by ticks)
Chlamydiae infection is treated with:
Azithromycin or doxycycline (tetracycline for C. pisttaci)
Toxoplasmosis is caused by:
Toxoplasma gondii
Chagas disease is caused by:
Trypanosoma cruzi
Kaposi sarcoma is caused by:
HHV8
The most important global cause of infantile gastroenteritis is:
Rotavirus
Name three symptoms of measles:
3C’s
Cough
Coryza (rhinitis)
Conjuntivitis
Drugs that inhibit folic acid synthesis (DNA methylation):
Sulfonamides (SULFAdiazine)
Trimethoprim
Drugs that inhibit DNA tropoisomerases 2 and 4:
Fluoroquinolones (ciproFLOXACIN)
Antibiotic that damages DNA by making free radicals:
Metronidazole
Bleomycin has also this mechanism
Antibiotic that inhibits mRNA synthesis (RNA polymerase):
Rifampin
Antibiotics that inhibit protein synthesis inhibiting 50s subunit:
Macrolides (aziTHROmycin) and Clindamycin: block translocation
Linezolid: blocks initiation
Streptogramims (DalfoPRISTIN, QuinuPRISTIN): block extrusion
Chloramphenicol: blocks peptidyltransferase
Antibiotics that inhibit protein synthesis inhibiting 30s subunit:
Aminoglycosides (amikaCIN, gentamiCIN): block 30s binding to Shine Dalgano sequence
Tetracyclines (doxyCYCLINE): block tRNA to bind the ribosome A site
Antibiotics that inhibit cell wall synthesis inhibiting peptidoglycan cross-linking:
Penicillins (AmoxiCILIN, piperaCLIN)
Cephalosporins (CEFazolin, CEFtaroline)
Carbapenems (doriPENEM)
Monobactams (aztreonam)
Antibiotics that inhibit cell wall synthesis inhibiting peptidoglycan synthesis:
Glycopeptides (bacitraCIN, vancomyCIN)
Cephalosporins with high activity against Pseudomonas:
4th generation (cefepime) and 3rd generation (ceftazidime)
5th generation cephalosporins (ceftaroline) spectrum:
Broad gram-positive and gram-negative including methicillin resistant staphylococcus aureus
Does not cover Pseudomonas
Antibiotics that treats anaerobic infections above the diaphragm:
Clindamycin
Antibiotics that treats anaerobic infections below the diaphragm:
Metronidazole
Treatment of Methicillin-resistant Staphylococcus aureus:
Non beta-lactams because mecA decreases PBP affinity for beta lactams
Vancomycin Clindamycin Linezolid TMP-SMX Doxycyclin
Treatment of Vancomycin-Resistant Enterococci:
Linezolid
Streptogramins (quinuPRISTIN)
Antibiotics to avoid in pregnancy:
Sulfonamides Aminoglycosides Fluoroquinolones Clarithromycin Tetracyclines Ribavirin (antiviral) Griseofulvin (antifungal) Chloramphenicol
SAFe Children Take Really Good Care
Streptococcus pyogenes (group A streptococci), characteristics, diseases and treatment:
Characteristics: Group A, beta hemolytic and bacitracin sensitive, hyaluronic acid capsule, Protein M
Diseases: Pharyngitis, scarlet fever and pyoderma/impetigo. Sequelae: Rheumatic fever and acute glomerulonephritis (+ streptozyme test)
Treatment: Beta-lactam or erythromycin
Staphylococcus aureus, characteristics, diseases and treatment:
Characteristics: Beta hemolytic, yellow, gram + cocci (clusters), catalase and coagulase +
Diseases: Gastroenteritis, endocarditis, abscesses and mastitis, toxic shock, impetigo, pneumonia, surgical infection and osteomyelitis
Treatment: Methicillin or vancomycin and fusidic acid if resistant
Streptococcus agalactiae (group B streptococci), characteristics, diseases and treatment:
Characteristics: Group B, beta hemolytic, bacitracin resistant and hydrolyzes hippurate
Diseases: Neonatal septicemia and meningitis, the meningitis starts a few weeks after birth vs Listeria that starts a few days after birth
Treatment: Ampicillin (Listeria) with cefotaxime
Streptococcus pneumoniae, characteristics, diseases and treatment:
Characteristics: Alpha!! partially hemolytic, gram+, catalase-, encapsulated, lancet-shaped, diplococcus, bile soluble (unable to be cultured in bile) and optochin sensitive
Diseases: Bacterial pneumonia, adult meningitis, otitis media and sinusitis in children
Treatment: Penicillin G, start with macrolides!! for community acquired pneumonia. Vancomycin+-rifampin!! if meningitis
Viridians streptococcus, characteristics, diseases and treatment:
Characteristics: Alpha hemolytic, bile and optochin resistant, s. sanguinis makes dextrans
Diseases: Dental caries and endocarditis
Treatment: Penicillin G (with aminoglycoside if endocarditis)
Enterococcus characteristics:
Gram+
Catalase-
PYR (pyrrolidonyl arylamidase)+
Grows on salt and bile
Enterococcus faecalis, characteristics, diseases and treatment:
Characteristics: Gram+, group B, bile esculin+, grows in 6.5% salt
Diseases: Urinary, biliary track infections and subacute endocarditis (damaged valve)
Treatment: All strains carry some drug resistance
Bacillus characteristics:
Gram+ rods
Spore-forming
Aerobic
Bacillus anthracis, characteristics, diseases and treatment:
Characteristics: Large gram+ spore-forming rods with poly-D-glutamate capsule
Diseases: Antrax, cutaneous antrax and pulmonary Wool Sorter’s Disease
Treatment: Ciprofloxacin or doxycycline
Listeria characteristics:
Gram+ Nonspore-forming rods Facultative intracellular Tumbling motility!! Cold growth 🍦
Mycobacterium characteristics:
Acid fast rods with waxy cell wall
Obligate aerobes
Mycobacterium tuberculosis, characteristics, diseases and treatment:
Characteristics: Auramine-rhodamine staining bacilli, acid fast, aerobic, slow growing on Lowenstein-Jensen, produce niacin and heat sensitive catalase
Diseases: Tuberculosis
Treatment:
First 2 months(isoniazid+rifampin+pyrazinamide)
Next 4 months (isoniazid+rifampin)
+ ethambutol or streptomycin
Clostridium characteristics:
Gram+ rod
Spore forming
Anaerobic
Neisseria characteristics:
Gram-
Diplococci with flattened sides
Oxidase+
Neisseria meningitidis, characteristics, diseases and treatment:
Characteristics: Gram-, kidney/bean shape cocci in pairs, large capsule, grows on chocolate agar and ferments maltose
Diseases: Meningitis and meningococcemia
Treatment: Penicillin G or ceftriaxone
Neisseria gonorrhoeae, characteristics, diseases and treatment:
Characteristics: Gram- diplococci, culture on Thayer-Martin medium
Disease: Gonorrhea
Treatment: Ceftriaxone + macrolide
Pseudomonas characteristics:
Gram- rod
MOTILE (twitching motility thanks to type IV pili and flagellum)
Oxidase+, catalase+
Aerobic
Make slime glycocalix (avoids phagocytosis)
Nonfermenting (grows in McConkey agar but doesn’t turn it pink)
Pseudomonas aeruginosa, characteristics, diseases and treatment:
Characteristics: Gram- rods, motile, oxidase+, aerobic, non-fermenting, pyocyanin pigment (blue-green), grape-like odor, MOTILE
Diseases: GI track colonization, folliculitis and eye ulcers in normal people. Pneumonia, septicemia, ectyma gangrenosum, malignant otitis externa… on diabetic, burn, neutropenic, chronic granulomatous disease…
Polysaccharide capsule forms biofilm so causes chronic pneumonia in CF!
Treatment: Antipseudomonal penicillin, 3g cephalosporins, fluoroquinolones
Legionella characteristics:
Weakly gram-
Requiere cysteine and iron
Water organisms
Legionella pneumophila, characteristics, diseases and treatment:
Characteristics: Gram- but stain poorly, require cysteine and iron, facultative intracellular
Disease: legionnaires disease (pneumonia, hyponatremia, mental confusion and diarrhea with no bug in GI tract)
Treatment: Levofloxacin + rifampin in immunodeficiency
Bordetella characteristics and main illness:
Gram- small rods
Strict aerobes
B. Pertussis: Whooping cough, unvaccinated with lymphocytosis and hypoglycemia
Francisella characteristics and main illness:
Gram- small cocobacilli
Facultative intracellular: needs Th1 and gives type 4 hypersensitivity
Zoonotic: 🐇 🦌 🐁 hunters (dermacentor tick)
F. Tularensis: tularemia, black ulcer due to tick bite, lymphadenopathy, atypical pneumonia (skinning rabbit), septicemia, diarrhea form eating undercooked rabbit
Tto: streptomycin (aminoglycosides)
Brucella characteristics and main illness:
Gram- rods
Aerobic
Zoonotic: 🐂 🐐 farmers, vets, unpasteurized 🥛 in Mexico
Facultative intracellular
Brucellosis: undulant fever, sweating a lot; can last years
Yersinia characteristics and main illness:
Gram- rods
Coagulase positive
Facultative intracellular
Bipolar 🧷 staining
Y. Pestis; Plague: Bubonic (fever, buboes-lymphadenopathies-, conjunctivitis) Pneumonic (hemoptisis, chests pain, dyspnea)
Zoonotic: southwest dessert flea from🐀🐿 and prairie dogs
Y. Enterocolitica: 🐶 mesenteric adenitis +- ileitis (pseudoappendicitis, discarded in CT or sx)
Zoonotic: raw pork, unpasteurized 🥛 in clod climates (Y. enteroCOLDitica), unfiltered water or pet feces
Tto: aminoglycosides
Bartonella characteristics and main illness:
Gram- rods + with warthin-starry
Transmission: 🐱 🐶 scratch/bite (in bite you clean and give amoxicillin-clavulanic for pasteurella if stays think bartonella)
B. Henselae: papule+ lymphadenopathy+- fever +- headache. Bacillary angiomatosis in AIDS
Stellate granulosis with central necrosis in lymph nodes
Campylobacter characteristics:
Gram-curved rod with polar flagella
Microaerophilic
Campylobacter jejuni, characteristics, diseases and treatment:
Characteristics: Gram- curved motile rods (seagull appearance) microaerophic (grows on Campy or Skirrow’s agar)
Disease: self limited enteritis that can lead to guillain-Barré
Treatment: Fluoroquinolones, erythromycin
Helicobacter pylori, characteristics, diseases and treatment:
Characteristics: Gram- spiral with flagella, microaerophilic, 37deg, oxidase+
Diseases: Chronic gastritis and duodenal ulcers, associated with stomach cancer
Treatment: Omeprazole+amoxicillin+clarithromycin
Escherichia characteristics:
Gram- rod, enterobacteriaceae, ferments lactose
Toxins that increase cAMP
Cholera
Antrax
E.Coli (M,E)
Pertussis
Escherichia coli, characteristics, diseases and treatment:
Characteristics: Gram- rod, motile, anaerobic, oxidase-, ferments lactose
Diseases: Urinary tract infection, neonatal septicemia and meningitis, septicemia
Treatment: Depends, trimethoprim-sulfamethoxazole for traveler’s diarrhea, fluoroquinolones for bloody diarrhea with pus and fever
Major encapsulated organisms:
Some Killers Have Pretty Nice Capsules:
Strep pneumoniae Klebsiella pneumoniae Haemophilus influenzae Type b Pseudomonas aeruginosa Neisseria meningitidis Cryptococcus neoformans
Klebsiella characteristics:
Gram- rod, enterobacteriaceae, major capsule
Klebsiella pneumoniae, characteristics, diseases and treatment:
Characteristics: Gram-, larger capsule, mucous, lactose-fermenting, oxidase-
Diseases: Pneumonia, urinary tract infections, septicemia
Treatment: test antibiotic sensitivity
Salmonella characteristics:
Gram- rod (enterobacteriaceae), non-lactose fermenter, flagellated and motile (flagella contributes to hematogenous spread)
Salmonella typhi, characteristics, diseases and treatment:
Characteristics: Gram- rods, Vi capsule, non-lactose fermenting, produces H2S
Disease: Typhoid fever
Treatment: Ciprofloxacin or ceftriaxone
Yersinia characteristics:
Gram- rod, enterobacteriaceae (oxidase-)
Enterobacteriaceae characteristics:
Gram- rods
Non-sporing
Ferment glucose
Reduce nitrate to nitrite
Enterobacteriaceae bacteria with clinical significance:
Highly pathogenic:
Yersinia
Salmonella
Shigella
Facultatively pathogenic: E. Coli Klebsiella Enterobacter Proteus Serratia Citrobacter
Proteus characteristics:
Gram- rod (enterobacteriaceae), with flagella, non-lactose fermenting, urease+, oxidase -
Alkalinizes the urine! and smells like ammonia
Vibrio characteristics:
Gram- curved rod with polar flagella, oxidase+
Haemophilus characteristics:
PLEOMORPHIC Gram NEGATIVE COCCOBACILLI!!! that requires growth factors X (hematin) and V (nicotinamide) so grows in chocolate agar or co-culture with S. Aureus
Haemophilus influenzae, characteristics, diseases and treatment:
Characteristics: Gram- rods, requires factors X and V (chocolate agar)
Diseases: Meningitis in unvaccinated, otitis media, bronchitis, pneumonia, epiglottitis, conjuntivitis
Treatment: Cefotaxime or ceftriaxone for meningitis (rifampin for prophylaxis!!)
Treponema characteristics and others of that type:
Spirochetes (spiral, axial filament) poor gram stain (Gram-but very thin to see)
Other spirochetes: Borrelia and Leptospira
Treponema pallidum, characteristics, diseases and treatment:
Characteristics: Poor gram stain (gram-), thin spirochete, obligate pathogen
Disease: Syphilis
Treatment: Penicillin G
Borrelia characteristics:
Large spirochetes, gram- and microaerophilic
Borrelia burgdorferi, characteristics, diseases and treatment:
Characteristics: Poorly seen in gram stain, spirochete
Disease: Lyme disease
Primary treatment: Doxycycline, amoxicillin or azithromycin, clarithromycin
Rickettsia characteristics and diseases:
Obligate intracellular, gram-
Rocky Mountain spotted fever (rickettsii; tick; flu like + centripetal rash) Typhus epidemic (prowazekii; louse) endemic (typhi; flea)
Chlamydia characteristics:
Obligate intracellular, not seen in gram but you can see iodine or giemsa-staining intraepithelial inclusion bodies, cannot make ATP, cell wall lacks muramic acid
Chlamydia trachomatis, characteristics, diseases and treatment:
Characteristics: Obligate intracellular, cannot make ATP, found in metabolically active cells, not seen in gram, no muramic acid
Diseases: STD, lymphogranuloma venereum, trachoma
Primary treatment: Doxycycline or azithromycin
Mycoplasma characteristics:
Smallest extracellular bacteria, no cell wall, sterols in membrane
Mycoplasma pneumoniae, characteristics, diseases and treatment:
Characteristics: extracellular, no cell wall, not seen in gram, requires colesterol in vitro culture! (Eaton agar)
Disease: Pneumonia
Primary treatment: macrolides
Gram+ bacteria are stained in:
Purple/blue
Gram- bacteria are stained in:
Red/pink
Antiphagocytic bacterial components:
Capsule
Pili of Neisseria gonorrhoeae
M-protein of Streptococcus pyogenes
A proteins of Staphylococcus aureus
Mechanism of action of both diphtheria toxin and pseudomonas exotoxin A:
Inhibition of protein synthesis trough inactivation of EF2
Gram- diplococcus, oxidase+ and does not ferment lactose
Neisseria
Gram+ coccus, catalase+ and coagulase-
Staphylococcus saprophyticus (UTI in newly active adolescent women)
Gram+ coccus, optochin-resistant and catalase-
Steptococcus viridians (subacute infective endocarditis and caries)
The oxidation-reduction requirement of anaerobes is:
Low
Filarial worm maturing in the lymphatics and causing elephantiasis
Wucheria bancrofti
Carrier of epidemic typhus and Trench Fever
Pediculus humanus
Two causative agents of elephantiasis are:
Wuchereria
Brugia
What do reduviid bugs transfer? How does it present?
American trypanosomiasis or Chagas disease
Periorbital edema+ myocarditis+ meningoencephalitis if acute dilation of organs if chronic
What do Tsetse flies transfer? How does it present?
African trypanosomiasis or sleeping sickness
Axially lymph node+ fever + flagellated trypomastigotes in blood or CSF
HPV 6 and 11 cause and are considered:
Anogenital condyloma acuminatun and laryngeal papillomas
Considered benign
HPV 16, 18 and 31 cause and are considered:
Cervical intraepithelial neoplasia
Considered malignant: most common cause of neoplasia
The leading cause of deaths AIDS is:
Pneumonia
Viral vaccines types and examples:
Recombinant: HepB and HPV
Killed: Rest In Peace Always (Rabies!!! Influenza, Polio Salk, HepA)
Live not attenuated:
Adenovirus
Live attenuated: All the rest Ex: MMR Mumps Measles or rubeola Rubella or german measles Rotavirus only live attenuated given in 👦
The window period in hepatitis is:
Between the end of the detectable HBsAg and the beginning of antibody to HBsAg
HBc antibody and HBeAg are present (HBcAg is not detectable in plasma)
Indicates carrier state in hepatitis:
HBsAg the past 6 months
Indicates viral production in hepatitis:
HbeAg
Grows in alkaline medium and the isolate is oxidase+
Vibrio cholerae
Owl’s eyes are and are caused by:
Basophilic intranuclear inclusions with smaller eosinophilic cytoplasmatic inclusion bodies
Caused by Cytomegalovirus (herpes virus, dsDNA)
Bacteria that require cysteine for growth:
Four Sisters Ella of the Cysteine Chapel:
Francisella
Legionella
Brucella
Pasteurella
Rheumatic fever occurs only after:
Pharyngitis with Group A streptococcus (s. pyogenes)
- Not after Group C streptococcus
- Not after group A skin infections
A key characteristic of Neisseria is that:
Is a facultative intracellular organism often seen within neutrophils
Mechanism of toxicity related to gram- bacteria:
EnDotoxin release
Achalasia, megacolon or megaureter could be caused by:
Trypanosoma cruzi (Chagas disease)
Common bacteria isolated in intraabdominal infections:
Bacteroides fragilis
Escherichia coli
Species that can cause disease with little amount of organisms:
Giardia lamblia (1 organism) Entamoeba histolytica (1 organism) Shigella (10-200 organisms) Campylobacter jejuni (500 organisms) Clostridium perfringens (500 organisms)
Vibrio cholerae, characteristics, diseases and treatment:
Characteristics: Gram-, oxidase+, comma-shaped rod, grows on alkaline but not on acidic media
Disease: cholera
Treatment: fluids, electrolytes and doxycycline/ciprofloxacin
Bugs with eXotoxins that inhibit translation or protein synthesis:
Corynebacterium diphtheriae
Pseudomona aeruginosa
Bugs with eXotoxins that increase fluid secretion:
Enterotoxigenic E. coli
Bacillus anthracis
Vibrio cholerae